MolReasoner: Toward Effective and Interpretable Reasoning for Molecular LLMs
Paper • 2508.02066 • Published • 12
data_source stringclasses 2
values | prompt listlengths 1 1 | ability stringclasses 1
value | reward_model dict | extra_info dict |
|---|---|---|---|---|
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is a dihydroxydocosapentaenoic acid (DiHDPE) that is (7Z,10Z,13E,14E,19Z)-docosapentaenoic acid carrying two hydroxy substituents at the 16 and 17-S positions. It is an intermediate of specialised proresolving mediators. It has a role as a human xenobiotic metabolite and a specialised ... | {
"description": "The molecule is a dihydroxydocosapentaenoic acid (DiHDPE) that is (7Z,10Z,13E,14E,19Z)-docosapentaenoic acid carrying two hydroxy substituents at the 16 and 17-S positions. It is an intermediate of specialised proresolving mediators. It has a role as a human xenobiotic metabolite and a specialised p... |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is an acyl-CoA that results from the formal condensation of the thiol group of coenzyme A with the carboxy group of oscr#22. It derives from an oscr#22. It is a conjugate acid of an oscr#22-CoA(4-).",
"style": "rule"
} | {
"description": "The molecule is an acyl-CoA that results from the formal condensation of the thiol group of coenzyme A with the carboxy group of oscr#22. It derives from an oscr#22. It is a conjugate acid of an oscr#22-CoA(4-).",
"index": 2,
"smiles": "CC1OC(OCCCCCCCCCCCCC(=O)SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)... |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is a glycosyloxyflavone that consists of flavonol attached to a D-xylosyl-D-glucosyl residue at position 3 via a glycosidic linkage. It is a disaccharide derivative, a glycosyloxyflavone and a xylosylglucoside. It derives from a flavonol.",
"style": "rule"
} | {
"description": "The molecule is a glycosyloxyflavone that consists of flavonol attached to a D-xylosyl-D-glucosyl residue at position 3 via a glycosidic linkage. It is a disaccharide derivative, a glycosyloxyflavone and a xylosylglucoside. It derives from a flavonol.",
"index": 3,
"smiles": "O=c1c(OC2OC(COC3OCC... |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is a member of the class of hydroxyanthraquinones isolated from the bark of Scutia myrtina. It has been shown to exhibit antiproliferative and antimalarial activities. It has a role as a metabolite, an antimalarial and an antineoplastic agent. It is a methyl ester, a ring assembly and ... | {
"description": "The molecule is a member of the class of hydroxyanthraquinones isolated from the bark of Scutia myrtina. It has been shown to exhibit antiproliferative and antimalarial activities. It has a role as a metabolite, an antimalarial and an antineoplastic agent. It is a methyl ester, a ring assembly and a... |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is a HETE anion that is the conjugate base of 9-HETE, obtained by deprotonation of the carboxy group; major species at pH 7.3. It is a conjugate base of a 9-HETE.",
"style": "rule"
} | {
"description": "The molecule is a HETE anion that is the conjugate base of 9-HETE, obtained by deprotonation of the carboxy group; major species at pH 7.3. It is a conjugate base of a 9-HETE.",
"index": 5,
"smiles": "CCCCCC=CCC=CCC(O)C=CC=CCCCC(=O)[O-]",
"split": "train"
} |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is a member of the class of cyclopentanes that is cyclopentane substituted by a 1-methylbutyl group. It has a role as a metabolite.",
"style": "rule"
} | {
"description": "The molecule is a member of the class of cyclopentanes that is cyclopentane substituted by a 1-methylbutyl group. It has a role as a metabolite.",
"index": 6,
"smiles": "CCCC(C)C1CCCC1",
"split": "train"
} |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is a phosphatidylcholine O-44:4 in which the alkyl and acyl groups specified at positions 1 and 2 are tetracosyl and (8Z,11Z,14Z,17Z)-icosatetraenoyl respectively. It is a phosphatidylcholine O-44:4 and a 2-acyl-1-alkyl-sn-glycero-3-phosphocholine. It derives from an all-cis-8,11,14,17... | {
"description": "The molecule is a phosphatidylcholine O-44:4 in which the alkyl and acyl groups specified at positions 1 and 2 are tetracosyl and (8Z,11Z,14Z,17Z)-icosatetraenoyl respectively. It is a phosphatidylcholine O-44:4 and a 2-acyl-1-alkyl-sn-glycero-3-phosphocholine. It derives from an all-cis-8,11,14,17-... |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is a dimethoxyflavone that is flavone substituted by methoxy groups at positions 6 and 7 and hydroxy groups at positions 5 and 4' respectively. It is a dimethoxyflavone and a dihydroxyflavone. It derives from a flavone.",
"style": "rule"
} | {
"description": "The molecule is a dimethoxyflavone that is flavone substituted by methoxy groups at positions 6 and 7 and hydroxy groups at positions 5 and 4' respectively. It is a dimethoxyflavone and a dihydroxyflavone. It derives from a flavone.",
"index": 8,
"smiles": "COc1cc2oc(-c3ccc(O)cc3)cc(=O)c2c(O)c1O... |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is an organophosphate oxoanion resulting from the removal of two protons from the phosphate group of ditrans,polycis-dodecaprenyl phosphate. It is a conjugate base of a ditrans,polycis-dodecaprenyl phosphate.",
"style": "rule"
} | {
"description": "The molecule is an organophosphate oxoanion resulting from the removal of two protons from the phosphate group of ditrans,polycis-dodecaprenyl phosphate. It is a conjugate base of a ditrans,polycis-dodecaprenyl phosphate.",
"index": 9,
"smiles": "CC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCC... |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is a monocarboxylic acid anion and a member of dithiolanes. It is a conjugate base of an asparagusic acid. It derives from a hydride of a 1,2-dithiolane.",
"style": "rule"
} | {
"description": "The molecule is a monocarboxylic acid anion and a member of dithiolanes. It is a conjugate base of an asparagusic acid. It derives from a hydride of a 1,2-dithiolane.",
"index": 10,
"smiles": "O=C([O-])C1CSSC1",
"split": "train"
} |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is a ring assembly consisting of benzimidazole substituted at position 2 by a 2-furyl group. A fungicide used as a seed treatment to control Fusarium spp. in cereals. It has a role as an antifungal agrochemical. It is a member of benzimidazoles, a member of furans and a benzimidazole f... | {
"description": "The molecule is a ring assembly consisting of benzimidazole substituted at position 2 by a 2-furyl group. A fungicide used as a seed treatment to control Fusarium spp. in cereals. It has a role as an antifungal agrochemical. It is a member of benzimidazoles, a member of furans and a benzimidazole fu... |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is a phenolate anion obtained by removal of two protons from position C-8 and O-6 of 7-demethylmitomycin B. It is the major microspecies at pH 7.3 (according to Marvin v 6.2.0.). It is a conjugate base of a 7-demethylmitomycin B(1-).",
"style": "rule"
} | {
"description": "The molecule is a phenolate anion obtained by removal of two protons from position C-8 and O-6 of 7-demethylmitomycin B. It is the major microspecies at pH 7.3 (according to Marvin v 6.2.0.). It is a conjugate base of a 7-demethylmitomycin B(1-).",
"index": 12,
"smiles": "CC1=C([O-])C(=O)C2=C(CO... |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is an amino trisaccharide consisting of 2-acetamido-2-deoxy-beta-D-glucopyranosyl, beta-D-mannopyranosyl and 2-acetamido-beta-D-glucopyranosyl residues joined in sequence by (1->2) and (1->4) glycosidic bonds. It is an amino trisaccharide and a member of acetamides. It derives from a b... | {
"description": "The molecule is an amino trisaccharide consisting of 2-acetamido-2-deoxy-beta-D-glucopyranosyl, beta-D-mannopyranosyl and 2-acetamido-beta-D-glucopyranosyl residues joined in sequence by (1->2) and (1->4) glycosidic bonds. It is an amino trisaccharide and a member of acetamides. It derives from a be... |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is a monomethoxybenzene that is 2-methoxyphenol substituted by a 3-(2-hydroxy-4-methoxyphenyl)propyl group at position 4. Isolated from the stems of Combretum griffithii, it exhibits anticancer activity. It has a role as a metabolite, an antimycobacterial drug, an antineoplastic agent ... | {
"description": "The molecule is a monomethoxybenzene that is 2-methoxyphenol substituted by a 3-(2-hydroxy-4-methoxyphenyl)propyl group at position 4. Isolated from the stems of Combretum griffithii, it exhibits anticancer activity. It has a role as a metabolite, an antimycobacterial drug, an antineoplastic agent a... |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is a beta-D-glucosiduronic acid that is the 7-O-glucuronide of (2R)-eriodictyol. Isolated from the flowers of Chrysanthemum indicum, it exhibits inhibitory activity for rat lens aldose reductase. It has a role as a metabolite and an EC 1.1.1.21 (aldehyde reductase) inhibitor. It is a b... | {
"description": "The molecule is a beta-D-glucosiduronic acid that is the 7-O-glucuronide of (2R)-eriodictyol. Isolated from the flowers of Chrysanthemum indicum, it exhibits inhibitory activity for rat lens aldose reductase. It has a role as a metabolite and an EC 1.1.1.21 (aldehyde reductase) inhibitor. It is a be... |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is a polyprenol diphosphate compound having fifteen prenyl units with undefined stereochemistry about the double bonds. It has a role as a Saccharomyces cerevisiae metabolite.",
"style": "rule"
} | {
"description": "The molecule is a polyprenol diphosphate compound having fifteen prenyl units with undefined stereochemistry about the double bonds. It has a role as a Saccharomyces cerevisiae metabolite.",
"index": 16,
"smiles": "CC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCC... |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is an anhydrohexose obtained by formation of a ring across the 3 and 6 positions of alpha-L-galactopyranose. It has a role as a marine metabolite. It is an anhydrohexose and a bridged compound. It derives from an alpha-L-galactose.",
"style": "rule"
} | {
"description": "The molecule is an anhydrohexose obtained by formation of a ring across the 3 and 6 positions of alpha-L-galactopyranose. It has a role as a marine metabolite. It is an anhydrohexose and a bridged compound. It derives from an alpha-L-galactose.",
"index": 17,
"smiles": "OC1OC2COC(C1O)C2O",
"sp... |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is a tertiary amino compound that consists of iminodiacetic acid bearing an N-phosphonomethyl substituent. It is a glycine derivative, an amino dicarboxylic acid, a member of phosphonic acids and a tertiary amino compound.",
"style": "rule"
} | {
"description": "The molecule is a tertiary amino compound that consists of iminodiacetic acid bearing an N-phosphonomethyl substituent. It is a glycine derivative, an amino dicarboxylic acid, a member of phosphonic acids and a tertiary amino compound.",
"index": 18,
"smiles": "O=C(O)CN(CC(=O)O)CP(=O)(O)O",
"s... |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is the S-(6-hydroxycyclohex-1-ene-1-carbonyl) derivative of coenzyme A. It derives from a coenzyme A. It is a conjugate acid of a 6-hydroxycyclohex-1-ene-1-carbonyl-CoA(4-).",
"style": "rule"
} | {
"description": "The molecule is the S-(6-hydroxycyclohex-1-ene-1-carbonyl) derivative of coenzyme A. It derives from a coenzyme A. It is a conjugate acid of a 6-hydroxycyclohex-1-ene-1-carbonyl-CoA(4-).",
"index": 19,
"smiles": "CC(C)(COP(=O)(O)OP(=O)(O)OCC1OC(n2cnc3c(N)ncnc32)C(O)C1OP(=O)(O)O)C(O)C(=O)NCCC(=O)... |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is a germacranolide isolated from the aerial parts of Carpesium divaricatum. It exhibits cytotoxicity against the human tumor cells, A-549 (nonsmall cell lung), SK-OV-3 (ovary), SK-MEL-2 (skin), XF-498 (central nervous system) and HCT-15 (colon). It has a role as a metabolite and an an... | {
"description": "The molecule is a germacranolide isolated from the aerial parts of Carpesium divaricatum. It exhibits cytotoxicity against the human tumor cells, A-549 (nonsmall cell lung), SK-OV-3 (ovary), SK-MEL-2 (skin), XF-498 (central nervous system) and HCT-15 (colon). It has a role as a metabolite and an ant... |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is an organic cation obtained by protonation of cariprazine. It is an ammonium ion derivative and an organic cation. It is a conjugate acid of a cariprazine.",
"style": "rule"
} | {
"description": "The molecule is an organic cation obtained by protonation of cariprazine. It is an ammonium ion derivative and an organic cation. It is a conjugate acid of a cariprazine.",
"index": 21,
"smiles": "CN(C)C(=O)NC1CCC(CCN2CCN(c3cccc(Cl)c3Cl)CC2)CC1.[H+]",
"split": "train"
} |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is a 3-hydroxy fatty acyl-CoA that results from the formal condensation of the thiol group of coenzyme A with the carboxy group of (R)-3-hydroxybehenic acid. It is a (R)-3-hydroxyacyl-CoA, a 3-hydroxy fatty acyl-CoA, a long-chain fatty acyl-CoA and an 11,12-saturated fatty acyl-CoA. It... | {
"description": "The molecule is a 3-hydroxy fatty acyl-CoA that results from the formal condensation of the thiol group of coenzyme A with the carboxy group of (R)-3-hydroxybehenic acid. It is a (R)-3-hydroxyacyl-CoA, a 3-hydroxy fatty acyl-CoA, a long-chain fatty acyl-CoA and an 11,12-saturated fatty acyl-CoA. It ... |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is an omega-carboxyacyl-CoA that results from the formal condensation of the thiol group of coenzyme A with one of the carboxy groups of glutaric acid. It has a role as a mouse metabolite. It derives from a coenzyme A. It is a conjugate acid of a glutaryl-CoA(5-).",
"style": "rule"
} | {
"description": "The molecule is an omega-carboxyacyl-CoA that results from the formal condensation of the thiol group of coenzyme A with one of the carboxy groups of glutaric acid. It has a role as a mouse metabolite. It derives from a coenzyme A. It is a conjugate acid of a glutaryl-CoA(5-).",
"index": 23,
"sm... |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is a tetracyclic triterpenoid that is lanost-8-ene substituted by hydroxy groups at positions 3 and 25, a methylidene group at position 24 and an oxo group at position 7. Isolated from the whole plant of Silybum marianum, it exhibits inhibitory activity against chymotrypsin. It has a r... | {
"description": "The molecule is a tetracyclic triterpenoid that is lanost-8-ene substituted by hydroxy groups at positions 3 and 25, a methylidene group at position 24 and an oxo group at position 7. Isolated from the whole plant of Silybum marianum, it exhibits inhibitory activity against chymotrypsin. It has a ro... |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is a trimethylbenzoic acid in which the three methyl substituents are located at positions 2, 4 and 6. It derives from a benzoic acid. It is a conjugate acid of a 2,4,6-trimethylbenzoate.",
"style": "rule"
} | {
"description": "The molecule is a trimethylbenzoic acid in which the three methyl substituents are located at positions 2, 4 and 6. It derives from a benzoic acid. It is a conjugate acid of a 2,4,6-trimethylbenzoate.",
"index": 25,
"smiles": "Cc1cc(C)c(C(=O)O)c(C)c1",
"split": "train"
} |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is a 3-oxo-fatty acyl-CoA that results from the formal condensation of the thiol group of coenzyme A with the carboxy group of (15Z)-3-oxotetracosenoic acid. It is a 3-oxo-fatty acyl-CoA, a very long-chain fatty acyl-CoA and a monounsaturated fatty acyl-CoA. It is a conjugate acid of a... | {
"description": "The molecule is a 3-oxo-fatty acyl-CoA that results from the formal condensation of the thiol group of coenzyme A with the carboxy group of (15Z)-3-oxotetracosenoic acid. It is a 3-oxo-fatty acyl-CoA, a very long-chain fatty acyl-CoA and a monounsaturated fatty acyl-CoA. It is a conjugate acid of a ... |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is a glycosyloxyflavone that is 3',4',5,7-tetrahydroxy-3-methoxyflavone attached to (6-deoxy-alpha-L-mannopyranosyl)-beta-D-glucopyranosyl residue at position 7 via a glycosidic linkage. It is isolated from the whole plant of Lepisorus contortus. It has a role as a metabolite. It is a ... | {
"description": "The molecule is a glycosyloxyflavone that is 3',4',5,7-tetrahydroxy-3-methoxyflavone attached to (6-deoxy-alpha-L-mannopyranosyl)-beta-D-glucopyranosyl residue at position 7 via a glycosidic linkage. It is isolated from the whole plant of Lepisorus contortus. It has a role as a metabolite. It is a g... |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is a bisindole alkaloid that is quinone bearing hydroxy substituents at positions 2 and 5 and two indol-3-yl groups at positions 3 and 6, one of which is carrying a prenyl group at position 5. Isolated from the culture broth of Chrysosporium merdarium, it acts as an inhibitor of HIV-1 ... | {
"description": "The molecule is a bisindole alkaloid that is quinone bearing hydroxy substituents at positions 2 and 5 and two indol-3-yl groups at positions 3 and 6, one of which is carrying a prenyl group at position 5. Isolated from the culture broth of Chrysosporium merdarium, it acts as an inhibitor of HIV-1 p... |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is a member of the class of octahydronaphthalenes that is drimenol in which a hydrogen of the allylic methyl group has been replaced by a hydroxy group. It has a role as a quorum sensing inhibitor and a plant metabolite. It is a member of octahydronaphthalenes, a sesquiterpenoid, a hom... | {
"description": "The molecule is a member of the class of octahydronaphthalenes that is drimenol in which a hydrogen of the allylic methyl group has been replaced by a hydroxy group. It has a role as a quorum sensing inhibitor and a plant metabolite. It is a member of octahydronaphthalenes, a sesquiterpenoid, a homo... |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is a 2-hydroxy steroid that is estrone substituted by a hydroxy group at position 2. It has a role as a human metabolite. It is a 2-hydroxy steroid and a member of catechols. It derives from an estrone.",
"style": "rule"
} | {
"description": "The molecule is a 2-hydroxy steroid that is estrone substituted by a hydroxy group at position 2. It has a role as a human metabolite. It is a 2-hydroxy steroid and a member of catechols. It derives from an estrone.",
"index": 30,
"smiles": "CC12CCC3c4cc(O)c(O)cc4CCC3C1CCC2=O",
"split": "train... |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is conjugate base of N-arachidonoylglycine. It has a role as a human metabolite. It is a N-acylglycinate and a N-(fatty acyl)-glycine(1-). It is a conjugate base of a N-arachidonoylglycine.",
"style": "rule"
} | {
"description": "The molecule is conjugate base of N-arachidonoylglycine. It has a role as a human metabolite. It is a N-acylglycinate and a N-(fatty acyl)-glycine(1-). It is a conjugate base of a N-arachidonoylglycine.",
"index": 31,
"smiles": "CCCCCC=CCC=CCC=CCC=CCCCC(=O)NCC(=O)[O-]",
"split": "train"
} |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is a long-chain fatty acid anion that is the conjugate base of 7-PAHSA, obtained by deprotonation of the carboxy group; major species at pH 7.3. It has a role as an anti-inflammatory agent, a hypoglycemic agent and a human metabolite. It is a conjugate base of a 7-PAHSA.",
"style": "... | {
"description": "The molecule is a long-chain fatty acid anion that is the conjugate base of 7-PAHSA, obtained by deprotonation of the carboxy group; major species at pH 7.3. It has a role as an anti-inflammatory agent, a hypoglycemic agent and a human metabolite. It is a conjugate base of a 7-PAHSA.",
"index": 32... |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is a cephalosporin carboxylic acid anion having acetoxymethyl and [2-(2-amino-1,3-thiazol-4-yl)-2-(methoxyimino)acetyl]amino side-groups, formed by proton loss from the carboxy group of the cephalosporin cefotaxime. It is a conjugate base of a cefotaxime.",
"style": "rule"
} | {
"description": "The molecule is a cephalosporin carboxylic acid anion having acetoxymethyl and [2-(2-amino-1,3-thiazol-4-yl)-2-(methoxyimino)acetyl]amino side-groups, formed by proton loss from the carboxy group of the cephalosporin cefotaxime. It is a conjugate base of a cefotaxime.",
"index": 33,
"smiles": "C... |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is an adenosine 5'-phosphate derivative that has the structure of coenzyme A dephosphorylated at C-3' and with a 5-triphospho-alpha-D-ribosyl substituent at C-2'. It derives from a coenzyme A. It is a conjugate acid of a 2'-(5-triphosphoribosyl)-3'-dephospho-CoA(6-).",
"style": "rule... | {
"description": "The molecule is an adenosine 5'-phosphate derivative that has the structure of coenzyme A dephosphorylated at C-3' and with a 5-triphospho-alpha-D-ribosyl substituent at C-2'. It derives from a coenzyme A. It is a conjugate acid of a 2'-(5-triphosphoribosyl)-3'-dephospho-CoA(6-).",
"index": 34,
... |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is a benzothiadiazole that is 1,2,3-benzothiadiazole in which the hydrogen at position 7 is replaced by a sulfanylcarbonyl group. It is used (particularly as its S-methyl thioester) as a fungicide and plant activator. It has a role as a plant activator and an antifungal agrochemical.",... | {
"description": "The molecule is a benzothiadiazole that is 1,2,3-benzothiadiazole in which the hydrogen at position 7 is replaced by a sulfanylcarbonyl group. It is used (particularly as its S-methyl thioester) as a fungicide and plant activator. It has a role as a plant activator and an antifungal agrochemical.",
... |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is a galactotriose that is beta-D-galatopyranose in which the hydroxy groups at positions 3 and 6 have been glycosylated by alpha-D-galactopyranosyl residues.",
"style": "rule"
} | {
"description": "The molecule is a galactotriose that is beta-D-galatopyranose in which the hydroxy groups at positions 3 and 6 have been glycosylated by alpha-D-galactopyranosyl residues.",
"index": 36,
"smiles": "OCC1OC(OCC2OC(O)C(O)C(OC3OC(CO)C(O)C(O)C3O)C2O)C(O)C(O)C1O",
"split": "train"
} |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is 1-[3-(Piperidin-1-yl)propyl]-1,3-dihydro-2H-benzimidazol-2-one in which the 4-position of the piperidine ring is substituted by a 5-chloro-1,3-dihydro-2H-benzimidazol-2-on-1-yl group. A dopamine antagonist, it is used as an antiemetic for the short-term treatment of nausea and vomit... | {
"description": "The molecule is 1-[3-(Piperidin-1-yl)propyl]-1,3-dihydro-2H-benzimidazol-2-one in which the 4-position of the piperidine ring is substituted by a 5-chloro-1,3-dihydro-2H-benzimidazol-2-on-1-yl group. A dopamine antagonist, it is used as an antiemetic for the short-term treatment of nausea and vomiti... |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is an organic heteropentacyclic compound that is 2,3,3a,12a-tetrahydroanthra[2,3-b]furo[3,2-d]furan-5,10-dione carrying three hydroxy substituents at positions 4, 6 and 8. It has a role as an Aspergillus metabolite. It is an organic heteropentacyclic compound, a cyclic acetal, a polyph... | {
"description": "The molecule is an organic heteropentacyclic compound that is 2,3,3a,12a-tetrahydroanthra[2,3-b]furo[3,2-d]furan-5,10-dione carrying three hydroxy substituents at positions 4, 6 and 8. It has a role as an Aspergillus metabolite. It is an organic heteropentacyclic compound, a cyclic acetal, a polyphe... |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is an organic heterohexacyclic compound that is cladoniamide B in which the chlorine attached to the methoxy-bearing indole moiety is replaced by a hydrogen. It has been isolated from the culture broth of Streptomyces uncialis. It is a cladoniamide, an organic heterohexacyclic compound... | {
"description": "The molecule is an organic heterohexacyclic compound that is cladoniamide B in which the chlorine attached to the methoxy-bearing indole moiety is replaced by a hydrogen. It has been isolated from the culture broth of Streptomyces uncialis. It is a cladoniamide, an organic heterohexacyclic compound,... |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is a 1,2-diacyl-sn-glycerol 3-phosphate in which the acyl substituents at positions 1 and 2 are specified as oleoyl and (6Z)-octadecenoyl respectively. It derives from an oleic acid and a petroselinic acid. It is a conjugate acid of a 1-oleoyl-2-(6Z)-octadecenoyl-sn-glycero-3-phosphate... | {
"description": "The molecule is a 1,2-diacyl-sn-glycerol 3-phosphate in which the acyl substituents at positions 1 and 2 are specified as oleoyl and (6Z)-octadecenoyl respectively. It derives from an oleic acid and a petroselinic acid. It is a conjugate acid of a 1-oleoyl-2-(6Z)-octadecenoyl-sn-glycero-3-phosphate(... |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is a pyrrolopyrimidine that is 7-deazaguanine bearing an aminomethyl substituent at the 7 position. It is a conjugate base of a 7-ammoniomethyl-7-deazaguanine.",
"style": "rule"
} | {
"description": "The molecule is a pyrrolopyrimidine that is 7-deazaguanine bearing an aminomethyl substituent at the 7 position. It is a conjugate base of a 7-ammoniomethyl-7-deazaguanine.",
"index": 41,
"smiles": "NCc1c[nH]c2nc(N)[nH]c(=O)c12",
"split": "train"
} |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is a lysophosphatidylcholine 24:0 in which the acyl group is specified as tetracosanoyl and is located at position 1. It is a lysophosphatidylcholine 24:0 and a 1-O-acyl-sn-glycero-3-phosphocholine. It derives from a tetracosanoic acid.",
"style": "rule"
} | {
"description": "The molecule is a lysophosphatidylcholine 24:0 in which the acyl group is specified as tetracosanoyl and is located at position 1. It is a lysophosphatidylcholine 24:0 and a 1-O-acyl-sn-glycero-3-phosphocholine. It derives from a tetracosanoic acid.",
"index": 42,
"smiles": "CCCCCCCCCCCCCCCCCCCC... |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is a 3-hydroxy fatty acyl-CoA(4-) obtained by deprotonation of the phosphate and diphosphate OH groups of (3R,13Z,16Z,19Z,22Z,25Z)-3-hydroxyoctacosapentaenoyl-CoA; major species at pH 7.3. It is a (R)-3-hydroxyacyl-CoA(4-), a 3-hydroxy fatty acyl-CoA(4-) and an 11,12-saturated fatty ac... | {
"description": "The molecule is a 3-hydroxy fatty acyl-CoA(4-) obtained by deprotonation of the phosphate and diphosphate OH groups of (3R,13Z,16Z,19Z,22Z,25Z)-3-hydroxyoctacosapentaenoyl-CoA; major species at pH 7.3. It is a (R)-3-hydroxyacyl-CoA(4-), a 3-hydroxy fatty acyl-CoA(4-) and an 11,12-saturated fatty acy... |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is an organic sodium salt that is the disodium salt of glycerol 2-phosphate. It contains a glycerol 2-phosphate(2-).",
"style": "rule"
} | {
"description": "The molecule is an organic sodium salt that is the disodium salt of glycerol 2-phosphate. It contains a glycerol 2-phosphate(2-).",
"index": 44,
"smiles": "O=P([O-])([O-])OC(CO)CO.[Na+].[Na+]",
"split": "train"
} |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is a 1-phosphatidyl-1D-myo-inositol 3,4-bisphosphate in which the phosphatidyl acyl groups at positions 1 and 2 are both specified as octanoyl. It is a 1-phosphatidyl-1D-myo-inositol 3,4-bisphosphate and an octanoate ester. It is a conjugate acid of a 1,2-dioctanoyl-sn-glycero-3-phosph... | {
"description": "The molecule is a 1-phosphatidyl-1D-myo-inositol 3,4-bisphosphate in which the phosphatidyl acyl groups at positions 1 and 2 are both specified as octanoyl. It is a 1-phosphatidyl-1D-myo-inositol 3,4-bisphosphate and an octanoate ester. It is a conjugate acid of a 1,2-dioctanoyl-sn-glycero-3-phospho... |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is an organofluorine compound that is 4-methylquinolizidine in which all of the hydrogens are replaced by fluorines. It has a role as a blood substitute. It derives from a 4-methylquinolizidine.",
"style": "rule"
} | {
"description": "The molecule is an organofluorine compound that is 4-methylquinolizidine in which all of the hydrogens are replaced by fluorines. It has a role as a blood substitute. It derives from a 4-methylquinolizidine.",
"index": 46,
"smiles": "FC(F)(F)C1(F)N2C(F)(F)C(F)(F)C(F)(F)C(F)(F)C2(F)C(F)(F)C(F)(F)... |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is a glucotriose that is D-glucopyranose in which the hydroxy groups at positions 2 and 6 have each been converted into the corresponding beta-D-glucopyranosyl derivatives. It derives from a sophorose and a gentiobiose.",
"style": "rule"
} | {
"description": "The molecule is a glucotriose that is D-glucopyranose in which the hydroxy groups at positions 2 and 6 have each been converted into the corresponding beta-D-glucopyranosyl derivatives. It derives from a sophorose and a gentiobiose.",
"index": 47,
"smiles": "OCC1OC(OCC2OC(O)C(OC3OC(CO)C(O)C(O)C3... |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is a member of the class of guanidines that is guanidine in which one of the hydrogens attached to the nitrogen at position 1 is substituted by a hydroxy group. It has a role as an antineoplastic agent and an antiviral agent. It is a member of guanidines and a one-carbon compound. It d... | {
"description": "The molecule is a member of the class of guanidines that is guanidine in which one of the hydrogens attached to the nitrogen at position 1 is substituted by a hydroxy group. It has a role as an antineoplastic agent and an antiviral agent. It is a member of guanidines and a one-carbon compound. It de... |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is a monohydroxyanthraquinone that is 9,10-anthraquinone substituted by a hydroxy group at position 2 and a hydroxymethyl group at position 3. It has been isolated from the roots of Rubia yunnanensis. It has a role as an antineoplastic agent and a plant metabolite. It is a primary alco... | {
"description": "The molecule is a monohydroxyanthraquinone that is 9,10-anthraquinone substituted by a hydroxy group at position 2 and a hydroxymethyl group at position 3. It has been isolated from the roots of Rubia yunnanensis. It has a role as an antineoplastic agent and a plant metabolite. It is a primary alcoh... |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is a stilbenoid that is the (2R,3S)-trans-stereoisomer of epsilon-viniferin, obtained by cyclodimerisation of trans-resveratrol. It is a member of 1-benzofurans, a polyphenol and a stilbenoid. It derives from a trans-resveratrol. It is an enantiomer of a (2S,3R)-trans-epsilon-viniferin... | {
"description": "The molecule is a stilbenoid that is the (2R,3S)-trans-stereoisomer of epsilon-viniferin, obtained by cyclodimerisation of trans-resveratrol. It is a member of 1-benzofurans, a polyphenol and a stilbenoid. It derives from a trans-resveratrol. It is an enantiomer of a (2S,3R)-trans-epsilon-viniferin.... |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is the conjugate base of methoxymycolic acid type-3 (IX''). A class of mycolic acids characterized by the presence of a proximal cis- cyclopropyl group followed by a cis C=C double bond and a distal (CH-CH3)-(CHO-CH3) fragment of (S,S) stereochemistry in the meromycolic chain.",
"sty... | {
"description": "The molecule is the conjugate base of methoxymycolic acid type-3 (IX''). A class of mycolic acids characterized by the presence of a proximal cis- cyclopropyl group followed by a cis C=C double bond and a distal (CH-CH3)-(CHO-CH3) fragment of (S,S) stereochemistry in the meromycolic chain.",
"inde... |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is a triply charged acyl-CoA oxoanion arising from deprotonation of the phosphate and diphosphate OH groups of 3-dehydrocarnityl CoA; major species at pH 7.3. It has a role as a bacterial metabolite. It is a conjugate base of a 3-dehydrocarnityl CoA.",
"style": "rule"
} | {
"description": "The molecule is a triply charged acyl-CoA oxoanion arising from deprotonation of the phosphate and diphosphate OH groups of 3-dehydrocarnityl CoA; major species at pH 7.3. It has a role as a bacterial metabolite. It is a conjugate base of a 3-dehydrocarnityl CoA.",
"index": 52,
"smiles": "CC(C)(... |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is a 2-pyranone in which the hydrogens at positions 4 and 6 of 2H-pyran-2-one are replaced by hydroxy and undecyl groups respectively. It is a member of 2-pyranones and a heteroaryl hydroxy compound.",
"style": "rule"
} | {
"description": "The molecule is a 2-pyranone in which the hydrogens at positions 4 and 6 of 2H-pyran-2-one are replaced by hydroxy and undecyl groups respectively. It is a member of 2-pyranones and a heteroaryl hydroxy compound.",
"index": 53,
"smiles": "CCCCCCCCCCCc1cc(O)cc(=O)o1",
"split": "train"
} |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is the L-enantiomer of serine. It has a role as a human metabolite, an algal metabolite, a Saccharomyces cerevisiae metabolite, an Escherichia coli metabolite and a mouse metabolite. It is a serine family amino acid, a proteinogenic amino acid, a L-alpha-amino acid and a serine. It is ... | {
"description": "The molecule is the L-enantiomer of serine. It has a role as a human metabolite, an algal metabolite, a Saccharomyces cerevisiae metabolite, an Escherichia coli metabolite and a mouse metabolite. It is a serine family amino acid, a proteinogenic amino acid, a L-alpha-amino acid and a serine. It is a... |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is a hydroxy fatty acid anion that is the conjugate base of (12Z,15Z,18Z,21Z,24Z)-2-hydroxytriacontapentaenoic acid, obtained by deprotonation of the carboxy group; major species at pH 7.3. It is a 2-hydroxy fatty acid anion, a hydroxy polyunsaturated fatty acid anion and an ultra-long... | {
"description": "The molecule is a hydroxy fatty acid anion that is the conjugate base of (12Z,15Z,18Z,21Z,24Z)-2-hydroxytriacontapentaenoic acid, obtained by deprotonation of the carboxy group; major species at pH 7.3. It is a 2-hydroxy fatty acid anion, a hydroxy polyunsaturated fatty acid anion and an ultra-long-... |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is an N-acyl-1-O-beta-D-glucosyl-4-hydroxy-15-methylhexadecasphinganine in which the acyl group has 22 carbons and 0 double bonds and is 2-hydroxylated. It derives from a 15-methylhexadecaphytosphingosine.",
"style": "rule"
} | {
"description": "The molecule is an N-acyl-1-O-beta-D-glucosyl-4-hydroxy-15-methylhexadecasphinganine in which the acyl group has 22 carbons and 0 double bonds and is 2-hydroxylated. It derives from a 15-methylhexadecaphytosphingosine.",
"index": 56,
"smiles": "CCCCCCCCCCCCCCCCCCCCC(O)C(=O)NC(COC1OC(CO)C(O)C(O)C... |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is a benzothiadiazole that is acibenzolar-S-methyl in which the thioester group has been hydrolysed to the corresponding carboxylic acid group. The active herbicide of the proherbicide acibenzolar-S-methyl. It has a role as an antifungal agrochemical, a plant activator and a fungicide.... | {
"description": "The molecule is a benzothiadiazole that is acibenzolar-S-methyl in which the thioester group has been hydrolysed to the corresponding carboxylic acid group. The active herbicide of the proherbicide acibenzolar-S-methyl. It has a role as an antifungal agrochemical, a plant activator and a fungicide. ... |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is a member of the class of bilanes that is a colourless product formed in the intestine by the reduction of bilirubin. It has a role as a human metabolite.",
"style": "rule"
} | {
"description": "The molecule is a member of the class of bilanes that is a colourless product formed in the intestine by the reduction of bilirubin. It has a role as a human metabolite.",
"index": 58,
"smiles": "CCC1=C(C)C(Cc2[nH]c(Cc3[nH]c(CC4NC(=O)C(C)=C4CC)c(C)c3CCC(=O)O)c(CCC(=O)O)c2C)NC1=O",
"split": "tr... |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is a (2S)-2-methylacyl-CoA that results from the formal condensation of the thiol group of coenzyme A with the carboxy group of (2S)-2-methylpentadecanoic acid. It is a long-chain fatty acyl-CoA, a (2S)-2-methylacyl-CoA and an 11,12-saturated fatty acyl-CoA. It is a conjugate acid of a... | {
"description": "The molecule is a (2S)-2-methylacyl-CoA that results from the formal condensation of the thiol group of coenzyme A with the carboxy group of (2S)-2-methylpentadecanoic acid. It is a long-chain fatty acyl-CoA, a (2S)-2-methylacyl-CoA and an 11,12-saturated fatty acyl-CoA. It is a conjugate acid of a ... |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is a 2,2'-iminobis[1-(6-fluoro-3,4-dihydro-2H-chromen-2-yl)ethanol] that has (1R,1'R,2R,2'S)-configuration. It is a conjugate base of a (S,R,R,R)-nebivolol(1+). It is an enantiomer of a (R,S,S,S)-nebivolol.",
"style": "rule"
} | {
"description": "The molecule is a 2,2'-iminobis[1-(6-fluoro-3,4-dihydro-2H-chromen-2-yl)ethanol] that has (1R,1'R,2R,2'S)-configuration. It is a conjugate base of a (S,R,R,R)-nebivolol(1+). It is an enantiomer of a (R,S,S,S)-nebivolol.",
"index": 60,
"smiles": "OC(CNCC(O)C1CCc2cc(F)ccc2O1)C1CCc2cc(F)ccc2O1",
... |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is an organothiophosphate insecticide, an organic phosphonate, a phosphonic ester, a member of salicylates and an isopropyl ester. It has a role as an EC 3.1.1.7 (acetylcholinesterase) inhibitor and an agrochemical. It derives from an isopropyl salicylate.",
"style": "rule"
} | {
"description": "The molecule is an organothiophosphate insecticide, an organic phosphonate, a phosphonic ester, a member of salicylates and an isopropyl ester. It has a role as an EC 3.1.1.7 (acetylcholinesterase) inhibitor and an agrochemical. It derives from an isopropyl salicylate.",
"index": 61,
"smiles": "... |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is an arabinuronic acid having L-configuration. It is a conjugate acid of a L-arabinuronate. It is an enantiomer of a D-arabinuronic acid.",
"style": "rule"
} | {
"description": "The molecule is an arabinuronic acid having L-configuration. It is a conjugate acid of a L-arabinuronate. It is an enantiomer of a D-arabinuronic acid.",
"index": 62,
"smiles": "O=CC(O)C(O)C(O)C(=O)O",
"split": "train"
} |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is a triterpenoid saponin that is (22S,24Z)-3beta-hydroxy-26-oxo-22,26-epoxy-9beta,19-cyclolanost-24-en-28-oic acid having a beta-D-glucosyl residue attached at position 3 via a glycosidic bond. It has a role as a plant metabolite. It is a steroid lactone, a triterpenoid saponin and a ... | {
"description": "The molecule is a triterpenoid saponin that is (22S,24Z)-3beta-hydroxy-26-oxo-22,26-epoxy-9beta,19-cyclolanost-24-en-28-oic acid having a beta-D-glucosyl residue attached at position 3 via a glycosidic bond. It has a role as a plant metabolite. It is a steroid lactone, a triterpenoid saponin and a p... |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is a 2-acyl-sn-glycero-3-phosphoethanolamine in which the acyl group is specified as (11R)-hydroxy-(5Z,8Z,12E,14Z)-icosatetraenoyl. It derives from an 11(R)-HETE. It is a tautomer of a 2-[(11R)-hydroxy-(5Z,8Z,12E,14Z)-icosatetraenoyl]-sn-glycero-3-phosphoethanolamine zwitterion.",
"s... | {
"description": "The molecule is a 2-acyl-sn-glycero-3-phosphoethanolamine in which the acyl group is specified as (11R)-hydroxy-(5Z,8Z,12E,14Z)-icosatetraenoyl. It derives from an 11(R)-HETE. It is a tautomer of a 2-[(11R)-hydroxy-(5Z,8Z,12E,14Z)-icosatetraenoyl]-sn-glycero-3-phosphoethanolamine zwitterion.",
"in... |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is a peptide anion that is the conjugate base of gamma-Glu-Trp, obtained by removal of protons from the two carboxy groups as well as protonation of the amino group; major species at pH 7.3. It is a conjugate base of a gamma-Glu-Trp.",
"style": "rule"
} | {
"description": "The molecule is a peptide anion that is the conjugate base of gamma-Glu-Trp, obtained by removal of protons from the two carboxy groups as well as protonation of the amino group; major species at pH 7.3. It is a conjugate base of a gamma-Glu-Trp.",
"index": 65,
"smiles": "[NH3+]C(CCC(=O)NC(Cc1c[... |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is an amino trisaccharide consisting of alpha-L-fucose, beta-D-galactose and N-acetyl-D-glucosamine residues joined by sequential (1->2)- and (1->3)-linkages. It has a role as an epitope. It is an amino trisaccharide and a glucosamine oligosaccharide.",
"style": "rule"
} | {
"description": "The molecule is an amino trisaccharide consisting of alpha-L-fucose, beta-D-galactose and N-acetyl-D-glucosamine residues joined by sequential (1->2)- and (1->3)-linkages. It has a role as an epitope. It is an amino trisaccharide and a glucosamine oligosaccharide.",
"index": 66,
"smiles": "CC(=O... |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is a quinone imine having amino substituents in the 2- and 5-positions and 4-aminophenyl substituents on both of the imine nitrogens. It is a trimer formed from 1,4-phenylenediamine. It has a role as a mutagen and an allergen. It derives from a 1,4-phenylenediamine.",
"style": "rule"... | {
"description": "The molecule is a quinone imine having amino substituents in the 2- and 5-positions and 4-aminophenyl substituents on both of the imine nitrogens. It is a trimer formed from 1,4-phenylenediamine. It has a role as a mutagen and an allergen. It derives from a 1,4-phenylenediamine.",
"index": 67,
"... |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is an acyl-CoA(4-) obtained by deprotonation of the phosphate and diphosphate groups of oscr#26-CoA; major species at pH 7.3. It is a conjugate base of an oscr#26-CoA.",
"style": "rule"
} | {
"description": "The molecule is an acyl-CoA(4-) obtained by deprotonation of the phosphate and diphosphate groups of oscr#26-CoA; major species at pH 7.3. It is a conjugate base of an oscr#26-CoA.",
"index": 68,
"smiles": "CC1OC(OCCCCCCCCCCCCCCC(=O)SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)([O-])OP(=O)([O-])OCC2OC(n3c... |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is a guanosine 3'-phosphate compound with a monophosphate group at the 3'-position. It has a role as an Escherichia coli metabolite. It is a guanosine 3'-phosphate and a purine ribonucleoside 3'-monophosphate. It is a conjugate acid of a guanosine 3'-monophosphate(2-).",
"style": "ru... | {
"description": "The molecule is a guanosine 3'-phosphate compound with a monophosphate group at the 3'-position. It has a role as an Escherichia coli metabolite. It is a guanosine 3'-phosphate and a purine ribonucleoside 3'-monophosphate. It is a conjugate acid of a guanosine 3'-monophosphate(2-).",
"index": 69,
... |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is an organofluorine compound that is 5-fluorocytosine substituted at the 1 position by a 2-(hydroxymethyl)-1,3-oxathiolan-5-yl group (2R,5S configuration). It is used in combination therapy for the treatment of HIV-1 infection. It has a role as an antiviral drug and a HIV-1 reverse tr... | {
"description": "The molecule is an organofluorine compound that is 5-fluorocytosine substituted at the 1 position by a 2-(hydroxymethyl)-1,3-oxathiolan-5-yl group (2R,5S configuration). It is used in combination therapy for the treatment of HIV-1 infection. It has a role as an antiviral drug and a HIV-1 reverse tra... |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is an organosulfate oxoanion that is the conjugate base of 2-palmitoyl-3,6,6'-tristearoyl-2'-sulfo-alpha,alpha-trehalose arising from deprotonation of the sulfate OH group; major species at pH 7.3. It has a role as a bacterial metabolite. It is a conjugate base of a 2-palmitoyl-3,6,6'-... | {
"description": "The molecule is an organosulfate oxoanion that is the conjugate base of 2-palmitoyl-3,6,6'-tristearoyl-2'-sulfo-alpha,alpha-trehalose arising from deprotonation of the sulfate OH group; major species at pH 7.3. It has a role as a bacterial metabolite. It is a conjugate base of a 2-palmitoyl-3,6,6'-t... |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is a guanidinium ion that is the conjugate acid of methylguanidine; major species at pH 7.3. It is a conjugate acid of a methylguanidine.",
"style": "rule"
} | {
"description": "The molecule is a guanidinium ion that is the conjugate acid of methylguanidine; major species at pH 7.3. It is a conjugate acid of a methylguanidine.",
"index": 72,
"smiles": "C[NH+]=C(N)N",
"split": "train"
} |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is a linear nonapeptide messenger belonging to the kinin group of proteins, with amino acid sequence RPPGFSPFR. Enzymatically produced from kallidin in the blood, it is a powerful vasodilator that causes smooth muscle contraction, and may mediate inflammation. It has a role as a human ... | {
"description": "The molecule is a linear nonapeptide messenger belonging to the kinin group of proteins, with amino acid sequence RPPGFSPFR. Enzymatically produced from kallidin in the blood, it is a powerful vasodilator that causes smooth muscle contraction, and may mediate inflammation. It has a role as a human b... |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is a tripeptide composed of two L-glutamic acid units and L-isoleucine joined in sequence by peptide linkages. It has a role as a metabolite. It derives from a L-glutamic acid and a L-isoleucine.",
"style": "rule"
} | {
"description": "The molecule is a tripeptide composed of two L-glutamic acid units and L-isoleucine joined in sequence by peptide linkages. It has a role as a metabolite. It derives from a L-glutamic acid and a L-isoleucine.",
"index": 74,
"smiles": "CCC(C)C(NC(=O)C(CCC(=O)O)NC(=O)C(N)CCC(=O)O)C(=O)O",
"split... |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is a lignan that is 2,3-dimethylbutane substituted by a 4-hydroxy-3-methoxyphenyl group at position 1 and a 3,4-dimethoxyphenyl group at position 4. It has been isolated from the bark of Machilus robusta. It has a role as a plant metabolite. It is a lignan and a member of guaiacols.",
... | {
"description": "The molecule is a lignan that is 2,3-dimethylbutane substituted by a 4-hydroxy-3-methoxyphenyl group at position 1 and a 3,4-dimethoxyphenyl group at position 4. It has been isolated from the bark of Machilus robusta. It has a role as a plant metabolite. It is a lignan and a member of guaiacols.",
... |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is a member of the class of hydroxyindoles that is 1H-indol-4-ol which is substituted by a nitriloacetyl group at the 3 position. It has a role as an Arabidopsis thaliana metabolite. It is an alpha-ketonitrile and a member of hydroxyindoles.",
"style": "rule"
} | {
"description": "The molecule is a member of the class of hydroxyindoles that is 1H-indol-4-ol which is substituted by a nitriloacetyl group at the 3 position. It has a role as an Arabidopsis thaliana metabolite. It is an alpha-ketonitrile and a member of hydroxyindoles.",
"index": 76,
"smiles": "N#CC(=O)c1c[nH]... |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is a beta-amino acid that is propionic acid in which one of the hydrogens at position 3 has been replaced by a dimethylamino group. It is a tertiary amino compound and a beta-amino acid. It derives from a N-methyl-beta-alanine.",
"style": "rule"
} | {
"description": "The molecule is a beta-amino acid that is propionic acid in which one of the hydrogens at position 3 has been replaced by a dimethylamino group. It is a tertiary amino compound and a beta-amino acid. It derives from a N-methyl-beta-alanine.",
"index": 77,
"smiles": "CN(C)CCC(=O)O",
"split": "t... |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is a glutamyl-L-amino acid obtained by formal condensation of the gamma-carboxy group of glutamic acid with the amino group of tryptophan. It is a conjugate acid of a gamma-Glu-Trp(1-).",
"style": "rule"
} | {
"description": "The molecule is a glutamyl-L-amino acid obtained by formal condensation of the gamma-carboxy group of glutamic acid with the amino group of tryptophan. It is a conjugate acid of a gamma-Glu-Trp(1-).",
"index": 78,
"smiles": "NC(CCC(=O)NC(Cc1c[nH]c2ccccc12)C(=O)O)C(=O)O",
"split": "train"
} |
CHEMBL/mol2desc | [
{
"content": "You are a professional chemist. Your task is to generate a natural, concise, and chemically accurate description of a molecule based on its SELFIES representation.\n\n### Example:\nMolecular SELFIES: [C][C][Branch1][C][C][Branch2][Branch1][=Branch2][C][O][P][=Branch1][C][=O][Branch1][C][O][O][P][=... | molecule | {
"ground_truth": "The molecule is a hydroxycalciol that is calciol in which the hydrogen at position 25 has been replaced by a hydroxy group. A prehormone resulting from the oxidation of calciol in the liver, it is further hydroxylated in the kidney to give calcitriol, the active form of vitamin D3. It has a role as... | {
"description": "The molecule is a hydroxycalciol that is calciol in which the hydrogen at position 25 has been replaced by a hydroxy group. A prehormone resulting from the oxidation of calciol in the liver, it is further hydroxylated in the kidney to give calcitriol, the active form of vitamin D3. It has a role as ... |
arxiv.org/abs/2508.02066