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La-Proteina SafeTensors Weights

These are the pretrained weights for La-Proteina, converted from the original PyTorch .ckpt checkpoints to SafeTensors format.

Source

Files

Score Networks

File Model Description
LD1_ucond_notri_512.safetensors LD1 Unconditional, no triangle update (up to 512 residues)
LD2_ucond_tri_512.safetensors LD2 Unconditional, with triangle update (up to 512 residues)
LD3_ucond_notri_800.safetensors LD3 Unconditional, long proteins (300-800 residues)
LD4_motif_idx_aa.safetensors LD4 Indexed motif scaffolding, all-atom (up to 256 residues)
LD5_motif_idx_tip.safetensors LD5 Indexed motif scaffolding, tip-atom (up to 256 residues)
LD6_motif_uidx_aa.safetensors LD6 Unindexed motif scaffolding, all-atom (up to 256 residues)
LD7_motif_uidx_tip.safetensors LD7 Unindexed motif scaffolding, tip-atom (up to 256 residues)

Decoders (Autoencoders)

File Model Description
AE1_ucond_512.safetensors AE1 Unconditional decoder (up to 512 residues)
AE2_ucond_800.safetensors AE2 Unconditional decoder (up to 800 residues)
AE3_motif.safetensors AE3 Motif scaffolding decoder

Conversion

These SafeTensors files were converted from the original PyTorch .ckpt checkpoints using the scripts/convert_weights_to_safetensors.py script in the La-Proteina repository. Weight tensors are stored as Float32. Only model weights are included (no optimizer state), which is why the SafeTensors files are significantly smaller than the original checkpoints.

License

These weights are licensed under the NVIDIA Open Model License. See the LICENSE file for full terms.

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Paper for MurrellLab/LaProteina.jl