NTR: insecticide resistance and LD related values

These are requested for PopBio data:
insecticide concentration in percent
insecticide concentration in parts per million or billion
insecticide concentration in mass per volume
insecticide concentration in mass per standard assay bottle

units can't be interconverted. should also create a parent term for insecticide concentration.

Likewise need for dose response assays:
LD50 in percent
LD50 in parts per million or billion
LD50 in mass per volume
LD50 in mass per standard assay bottle
LD90 in percent
LD95 in parts per million or billion
LD95 in mass per volume
LD95 in mass per standard assay bottle
May need these in future
LD90 in percent
LD90 in parts per million or billion
LD90 in mass per volume
LD90 in mass per standard assay bottle
LD99 in percent
LD99 in parts per million or billion
LD99 in mass per volume
LD99 in mass per standard assay bottle

I wonder if we should use 'pesticide' instead of 'insecticide' to include all arthropods (not only insects). However, 'insecticide resistance assay' and its children are already in VEuPath.

Label
Definition
Equivalent axiom

insecticide concentration
A scalar measurement datum of the concentration of an insecticide.
'scalar measurement datum' and 'is quality measurement of' some ('concentration of' and 'inheres in' some ('has role' some insecticide))

insecticide concentration in percent
An insecticide concentration measured as a percent.
'insecticide concentration' and 'has measurement unit label' only percent

insecticide concentration in parts per million or billion
An insecticide concentration measured as either parts per million or parts per billion.
'insecticide concentration' and 'has measurement unit label' only ('parts per million' or 'parts per billion')

insecticide concentration in density unit
An insecticide concentration that has a density unit.
'insecticide concentration' and 'has measurement unit label' only 'density unit'

insecticide concentration in mass per standard assay bottle
An insecticide concentration that has a unit of mass unit per standard assay bottle, which is 250 ml.

virulence score (LDt50) in percent
A virulence score (LDt50) measured as a percent.
'virulence score (LDt50)' and 'has measurement unit label' only percent

virulence score (LDt50) in parts per million or billion
A virulence score (LDt50) measured as either parts per million or parts per billion.
'virulence score (LDt50)' and 'has measurement unit label' only ('parts per million' or 'parts per billion')

virulence score (LDt50) in density unit
A virulence score (LDt50) that has a density unit.
'virulence score (LDt50)' and 'has measurement unit label' only 'density unit'

virulence score (LDt50) in mass per standard assay bottle
A virulence score (LDt50) that has a unit of mass unit per standard assay bottle, which is 250 ml.

virulence score (LDt90)
A data item that is about some virulence and is the count of infectious agents that kill 90% of a collection of human beings infected with the agents
subclass axiom: 'is about' some virulence

Thanks John - this looks like a great start.

Insecticide vs pesticide - no strong opinion, as long as our chosen display names can be used in our resources
Did you ask Sarah about the standard assay bottle size?
Does the word 'virulence' imply viruses to anyone else, or is it just me?
Also does 'score' imply that a higher number means more virulence?  In this case it doesn't.  A higher concentration means the insecticide is less effective at killing.
I see from a quick Google that LD50 (lethal dose) is more generic than LC50 (lethal concentration) - because the dose can measure things like radiation - we can go with this, but what is the 't' in LDt50?

Great - when we're done with concentrations and LDt50 - just a reminder that LT50 and KDT50 (and KDT90 etc) are also needed.

It turns out "virulence" is not appropriate here after all since it refers to an infectious agent.
So here's what I now propose for LD50 in percent:
Label: lethal insecticide concentration 50
Definition: The concentration of an insecticide that is expressed as a percentage and kills 50% of a population of insects.

LT50
Label: lethal insecticide time 50
Definition: A time measurement datum that is about the duration of exposure to an insecticide that results in the death of 50% of a population of insects.
By the way, we can make these more generic if preferred, in other words without reference to insecticide or pesticide.

Sarah and Sam agree with proposed definition.

Here are updated labels and definitions for the original list. All terms besides the first term in the list are subclasses of the first term.

Label
Definition
Equivalent axiom

insecticide concentration datum
A scalar measurement datum of the concentration of an insecticide.
'scalar measurement datum' and 'is quality measurement of' some ('concentration of' and 'inheres in' some ('has role' some insecticide))

insecticide concentration in percent
An insecticide concentration measured as a percent.
'insecticide concentration datum' and 'has measurement unit label' only percent

insecticide concentration in parts per million or billion
An insecticide concentration measured as either parts per million or parts per billion.
'insecticide concentration datum' and 'has measurement unit label' only ('parts per million' or 'parts per billion')

insecticide concentration in density unit
An insecticide concentration that has a density unit.
'insecticide concentration datum' and 'has measurement unit label' only 'density unit'

insecticide concentration in mass per standard assay bottle
An insecticide concentration that has a unit of mass unit per standard assay bottle, which is 250 ml.

lethal insecticide concentration 50
A data item that is about the concentration of an insecticide that kills 50% of a population of insects.

lethal insecticide concentration 50 in percent
A lethal insecticide concentration 50, expressed as a percent.
'lethal insecticide concentration 50' and 'has measurement unit label' only percent

lethal insecticide concentration 50 in parts per million or billion
A lethal insecticide concentration 50, expressed as either parts per million or parts per billion.
'lethal insecticide concentration 50' and 'has measurement unit label' only ('parts per million' or 'parts per billion')

lethal insecticide concentration 50 in density unit
A lethal insecticide concentration 50 that has a density unit.
'lethal insecticide concentration 50' and 'has measurement unit label' only 'density unit'

lethal insecticide concentration 50 in mass per standard assay bottle
A lethal insecticide concentration 50 that has a unit of mass unit per standard assay bottle, which is 250 ml.

lethal insecticide concentration 95
A data item that is about the concentration of an insecticide that kills 95% of a population of insects.

lethal insecticide concentration 95 in percent
A lethal insecticide concentration 95, expressed as a percent.
'lethal insecticide concentration 95' and 'has measurement unit label' only percent

lethal insecticide concentration 95 in parts per million or billion
A lethal insecticide concentration 95, expressed as either parts per million or parts per billion.
'lethal insecticide concentration 95' and 'has measurement unit label' only ('parts per million' or 'parts per billion')

lethal insecticide concentration 95 in density unit
A lethal insecticide concentration 95 that has a density unit.
'lethal insecticide concentration 95' and 'has measurement unit label' only 'density unit'

lethal insecticide concentration 95 in mass per standard assay bottle
A lethal insecticide concentration 95 that has a unit of mass unit per standard assay bottle, which is 295 ml.

Need to add alternative labels for LC50 like terms.

Hi John,
Everything from "lethal insecticide concentration 50" and below should be a child of a new parent "insecticide resistance datum"
thank you!

Hi John,
These are all the combinations of measurement-type and unit in the current live VB release.
I'm making another sheet in the master spreadsheet to create the look-up I'll need to map the old data to the new terms.  I'll comment on Slack when I'm done.  thanks!
fraction greater than 99th percentile reference activity:percent
KDT50:minute
LC100:percent
LC50:gram per meter squared
LC50:microgram
LC50:microgram per liter
LC50:microgram per milliliter
LC50:milligram per liter
LC50:milligram per square meter
LC50:parts per billion
LC50:parts per million
LC50:percent
LC90:milligram per liter
LC90:parts per million
LC95:gram per meter squared
LC95:microgram
LC95:microgram per liter
LC95:milligram per liter
LC95:milligram per square meter
LC95:parts per billion
LC95:parts per million
LC99:microgram
LC99:milligram per liter
LC99:parts per million
log2(mean sample activity / mean reference strain activity):ratio
log2(median sample activity / median reference strain activity):ratio
LT50:minute
LT90:minute
LT95:minute
mortality rate:percent

Does "density unit" mean mass per volume?
We also have mass per area, see above.   Do we need two flavours of terms:  "volume density unit" and "area density unit" ?
Please also ask me or Sarah about the enzymatic activity measures if you need any help.

The Unit Ontology has 'density unit', based on influence exerted by some mass. Children of that term include 'area density unit' (influence on an area) and 'mass density unit' (influence over a volume). That last one should be labeled "volume density unit" but isn't. I will import those terms that aren't in VEuPath.

@zhengj2007 I'm thinking of defining 'insecticide concentration' using this axiom:
'scalar measurement datum' and 'is quality measurement of' some ('concentration of' and 'inheres in' some ('has role' some insecticide and 'part of' some water))
This is the same axiom I posted here, except I added the reference to water. This follows ENVO's use of 'concentration of' to define terms axiomatically.
Should I add this axiom? I think we discussed not using 'concentration of' in axioms, so I wonder if I should come up with an alternative.

It looks good to me. Since the domain of 'has role' is 'independent continuant', shall we make it clear as?
'concentration of' and
('inheres in' some (('material entity' and ('has role' some insecticide))
and ('part of' some 'liquid water')))

May not always be 'liquid water' - want to replace with solvent.

These terms from https://docs.google.com/spreadsheets/d/1vlj-4NTpKJNjj-eU-JgJr6d2OHXiGwiK14InUeNmA7c/edit#gid=1074853426
will also need terms please
VBcv:0001116 log2(mean sample activity / mean reference strain activity) UO:0000190 ratio
VBcv:0001124 log2(median sample activity / median reference strain activity) UO:0000190 ratio
VBcv:0001111 fraction greater than 99th percentile reference activity UO:0000187 percent

A ratio of the mean enzymatic activity of a field-collected sample compared to that of a reference strain (usually a laboratory colony) expressed as a log base two transformed ratio
A ratio of the median enzymatic activity of a field-collected sample compared to that of a reference strain (usually a laboratory colony) expressed as a log base two transformed ratio
The fraction of individuals exhibiting higher activity than the 99th percentile of the control insects.

Make these individuals of the ratio class.

EUPATH:0043140
Label:
unit of log2 ratio of specimen population mean enzymatic activity to that of reference specimen population
Definition:
A ratio unit that denotes the mean enzymatic activity of a field-collected population of specimens compared to that of a reference population, normalized by a base two logarithmic transformation.
EUPATH:0043141
Label:
unit of log2 ratio of specimen population median enzymatic activity to that of reference specimen population
DefinitIon:
A ratio unit that denotes the median enzymatic activity of a field-collected population of specimens compared to that of a reference population, normalized by a base two logarithmic transformation.
EUPATH:0043142
Label:
unit of population fraction with greater enzymatic activity than 99th percentile of reference population
Definition:
A fraction unit that denotes the fraction of a population exhibiting higher enzymatic activity than the 99th percentile of a reference population.

These are all in eupath_dev now, except I'm still working on some KDT and LT terms.
For 'mortality rate' I suggest http://purl.obolibrary.org/obo/APOLLO_SV_00000445 because it is defined as a measurement datum. (Other ontologies have 'mortality rate' as a quality.)

APOLLO_SV_00000445 looks good to me. May consider to contact APOLLO_SV to relabel the term like 'mortality rate measurement datum' to make it clarified.

Just checking John are these the ontologies you want Bob and I to check from the meeting notes?

@SAK22 Yes, please review the terms here: https://github.com/VEuPathDB-ontology/VEuPathDB-ontology/blob/master/src/ontology/axiom_template/insecticide_resistance.csv and the 3 terms I put in a comment here 3 days ago.

Ok so the ones from three days ago look good @johnwjudkins, @bobular can you confirm you agree?
The ones in the link also look good, could you explain to me the ones that say A data item that....for things like lethal insecticide concentration 50. I think it is just me not understanding ontology wording! @bobular can you confirm you are happy with these?

We  use the phrase "a data item that..." for these concentration data terms because we need to distinguish between data about the concentration and the concentration itself. Only data about the concentration can have units (percent, g/m^2, etc.).

Updated mapping spreadsheet here: https://docs.google.com/spreadsheets/d/1vlj-4NTpKJNjj-eU-JgJr6d2OHXiGwiK14InUeNmA7c/edit#gid=1074853426 for discussion on call

Label: median knockdown time
Definition: A time measurement datum specifying the time at which half of a population of insects has died as a result of exposure to insecticide.
Source: PMC2459197

Alternative term: KDT50
If the above is OK, I'll add it to the template along with:
90 percent knockdown time
95 percent knockdown time

That's correct John, there's no KDT95 (for example) in our data, and unlikely to come.
The term + definition look good to me.  Thanks

For the remaining ratio data terms (for which we already have units):
EUPATH:0043152
label: ratio of specimen population mean enzymatic activity to that of reference specimen population
definition: A data item that denotes the proportionality of the mean enzymatic activity of a field-collected population of specimens compared to that of a reference population.
EUPATH:0043153
label: ratio of specimen population median enzymatic activity to that of reference specimen population
definition: A data item that denotes the proportionality of the median enzymatic activity of a field-collected population of specimens compared to that of a reference population.
EUPATH:0043154
label: population fraction with greater enzymatic activity than 99th percentile of reference population
definition: A data item that specifies the fraction of a population exhibiting higher enzymatic activity than the 99th percentile of a reference population.
Subclass axiom for all 3 terms:
'is about' some ('catalytic activity' and realizes some ('function of' only enzyme))

Should change 'denotes' to 'specifies' for first two terms.

In release; closing.

In release; closing.


Automated cherry pick of #3332: fix: allow multi-guest-dhcp

Cherry pick of #3332 on release/2.11.
#3332: fix: allow multi-guest-dhcp

/lgtm
/approve


Notifications

Lol, accident

You added notifications?

Yes, but only on Linux. On macOS it's a bit more complicated.

Aww dang it. That would have been so useful

I think its possible on Windows as well. There is a module called Win10Toast on PyPi that does this

It's possible on Mac using osascript. Look here and in the comments on it

I opened this issue accidentally from #38. I do plan to implement notifications for Windoze and mac, but I track it in #38.

Oh

No problem!
It's just that I'd rather not have two separate issues on kinda the same topic, 'cause later it would be harder to find the info I'm looking for.

Makes sense!


Dependency update

Is this waiting on anything in particular that I can help out with? 🙏

Thanks @tomlokhorst! Keep safe


Operations on index types not used for array access

Fuse disallows:
a[2 * i] // i is an iterator

Since * is not defined on index types. However, it will also reject this:
x[0] := 2*i; // i is an iterator

I think the latter should be allowed with the following semantics:
When an index type has an operation performed on it, it gets upcast to a sized int. This also has the nice property of making sure that the first program is still rejected (since access using dynamic ints is not allowed).
The result of the operation is also a dynamic int.
@sampsyo if this sounds good, please LGTM.

Yes!! I'm all for it.
This is less essential, but you could also consider an explicit conversion (2 * int_of_idx(i), named in OCaml style, for example). The implicit conversion would just do the same thing "on demand."

Since the upcast function is all in one place, we can simply generate explicit annotations like this for every upcast is a restricted version of the language.
I'm imagining a fuse --strict flag that enforces all of these conversions explicitly.


connect with custom server

Hi,
I want to connect with custom server instead of "https://sepfy.github.io/webrtc/?deviceId=1". Now i have changed SERVER_CONFIG in peer_signaling.h and mqtt connection establish. now when they shared offer data on that time i'm getting some errors. So is there any example code available of server side which is working with /example/generic.
Thanks

@Param-21 Hello, what's your error? What do you mean by your server example? If you are referring to frontend code, you can refer to this repo.
https://github.com/sepfy/sepfy.github.io/blob/main/webrtc/index.html

@HaARDIKSD297 not support yet

@sepfy Is there any available code that takes audio from server and plays on client's speaker, Currently I am using generic example code which is sending audio/video from client to server.
Thanks,


MSVC 2015 support?

Hi,
is there any schedule for adding [VS 2015](https://groups.google.com/forum/#!searchin/or-tools-discuss/visual$20studio$202015/or-tools-discuss/BWqEiA0PfRQ/sr_QGQAXCgAJ support)? Is anyone aware of what could be the main issues preventing a port?

Hi,
One if the dependencies (protobuf) was not ported yet.
Le 29 févr. 2016 08:04, "Michael Helmling"<EMAIL_ADDRESS>a
écrit :

Hi,
is there any schedule for adding VS 2015
https://groups.google.com/forum/#!searchin/or-tools-discuss/visual%2420studio%24202015/or-tools-discuss/BWqEiA0PfRQ/sr_QGQAXCgAJ support?
Is anyone aware of what could be the main issues preventing a port?
—
Reply to this email directly or view it on GitHub
https://github.com/google/or-tools/issues/158.

Thanks for your answer. I'll stick with 2013 for now, then. Perhaps we can leave this ticket open to track the progress of VS2015 support, though?

yes please.
Laurent Perron | Operations Research |<EMAIL_ADDRESS>| (33) 1 42 68 53
00
2016-03-01 2:22 GMT-08:00 Michael Helmling<EMAIL_ADDRESS>
Thanks for your answer. I'll stick with 2013 for now, then. Perhaps we can
leave this ticket open to track the progress of VS2015 support, though?
—
Reply to this email directly or view it on GitHub
https://github.com/google/or-tools/issues/158#issuecomment-190651278.

As of today, visual studio 2015 is supported.
Make sure you clean everything, get the latest sources, before compiling.

Awesome, thanks a lot!


[AMBARI-24575] User get stuck between steps if API returns empty version_definitions array

What changes were proposed in this pull request?
In Install Wizard when user goes to step1 API request to load version definitions is sent. Sometimes this request returns empty array and UI is not showing any error and just shows empty page.
How was this patch tested?

retest this please

Refer to this link for build results (access rights to CI server needed):
https://builds.apache.org/job/Ambari-Github-PullRequest-Builder/3828/
Test FAILed.
Test FAILured.


Job 7 - Simple User Roles

http://comp4711.jlparry.com/display/tutorial/ci-todo07

while waiting for job 4 done, started job7 before job 6 finished


Fix slicing for masked arrays

[x] Closes #11296
[ ] Tests added / passed
[ ] Passes pre-commit run --all-files

Thanks for the fast fix @phofl @hendrikmakait!

Many thanks @phofl - @rcomer prompted me to your fix, and I tested with the current main of Dask, and all our previously dying tests are now healthy and happy like ducks :beer:


Refactor cmake archs

Refactor all of the supported arches to be at the top of this file.

N/A

@swift-ci please test


Skip publish

I want to skip publish plugin, is that possible?

This seems to be a duplicate of #60


Update rust chrono dep to (maybe) fix dependency alert

The dependency on the chrono crate in src/logging.rs for Local::Now() which returns a DateTime and then the subsequent formatting mean that we import chrono. On some execution paths chrono calls libc::localtime_r which can crash. I don't think that we run that execution path, but it isn't impossible.
Hopefully updating to 0.4.27 fixes this. Chrono is a widely used datetime crate in rust.
https://github.com/refraction-networking/conjure/security/dependabot/8

Turns out this is not a solution to the security notice. However, which chrono imports the older version of time that is vulnerable, chrono itself shouldn't have that in any execution path according to
$ cargo audit
    Fetching advisory database from `https://github.com/RustSec/advisory-db.git`
      Loaded 562 security advisories (from /.cargo/advisory-db)
    Updating crates.io index
    Scanning Cargo.lock for vulnerabilities (126 crate dependencies)
Crate:     time
Version:   0.1.45
Title:     Potential segfault in the time crate
Date:      2020-11-18
ID:        RUSTSEC-2020-0071
URL:       https://rustsec.org/advisories/RUSTSEC-2020-0071
Severity:  6.2 (medium)
Solution:  Upgrade to >=0.2.23
Dependency tree:
time 0.1.45
└── chrono 0.4.27
    └── rust_dark_decoy 0.0.1

error: 1 vulnerability found!

The solution seems to be replacing chrono with the time crate.
 $ cargo audit
    Fetching advisory database from `https://github.com/RustSec/advisory-db.git`
      Loaded 562 security advisories (from /home/jmwample/.cargo/advisory-db)
    Updating crates.io index
    Scanning Cargo.lock for vulnerabilities (113 crate dependencies)

We can achieve equivalent logging with:
use chrono::Local;
use time::OffsetDateTime;
use time::macros::format_description;

fn main() {
    let t = Local::now();
    let t_s = t.format("%Y-%m-%d %H:%M:%S.%f %z").to_string();
    println!("{t_s}");

    let t_1 = OffsetDateTime::now_local().unwrap();
    let formatter = format_description!("[year]-[month]-[day] [hour]:[minute]:[second].[subsecond digits:9] [offset_hour][offset_minute]");
    println!("{}", t_1.format(formatter).unwrap());
}

2023-08-30 15:15:40.956179666 -0600
2023-08-30 15:15:40.956287238 -0600


[Bug] Drop-in assets not working on macOS client (3.8.1)

Describe the bug
drop-in assets not working on macOS client (3.8.1) -- never sees files added
To Reproduce
On launch I see this:
28-10 18:19:46.377 INFO  [Folder Monitoring Thread for "/Users/dkoski/Downloads/pinball"] d.m.v.c.u.FolderMonitoringThread - Launched Folder Monitoring Thread for "/Users/dkoski/Downloads/pinball"
28-10 18:19:46.379 INFO  [Folder Monitoring Thread for "/Users/dkoski/Downloads/pinball"] d.m.v.c.u.FolderMonitoringThread - Folder monitor failed: Modifier not supported
java.lang.UnsupportedOperationException: Modifier not supported
	at java.base/sun.nio.fs.PollingWatchService.register(Unknown Source)
	at java.base/sun.nio.fs.UnixPath.register(Unknown Source)
	at de.mephisto.vpin.commons.utils.FolderMonitoringThread.lambda$startMonitor$0(FolderMonitoringThread.java:66)
	at java.base/java.lang.Thread.run(Unknown Source)
28-10 18:19:46.379 INFO  [Folder Monitoring Thread for "/Users/dkoski/Downloads/pinball"] d.m.v.c.u.FolderMonitoringThread - Folder Monitoring Thread for "/Users/dkoski/Downloads/pinball" terminated.
28-10 18:19:46.409 INFO  [JavaFX Application Thread] d.m.v.u.d.DropInManager - Drop-in monitoring enabled: true

I know this was working when the drop-in assets was first introduced.
Desktop (please complete the following information):

OS: macOS 15

The issue here is that the recursive monitoring of a folder is only supported for Window clients. I've added a switch so that the regular folders is working again on macOS + Linux, but not subfolders.

Fixed with 3.9.0


There is no easy way for me to check the hygiene error. I can go to Output -> Git, but normal users wouldn't be able to find this out.

Yeah... we're bound to parse the output of git commit. Here's the full output of that command:
Found '/home/joao/Work/vscode/.nvmrc' with version <8.9.2>
Now using node v8.9.2 (npm v5.5.1)

> husky - npm run -s precommit
> husky - node v8.9.2

Reading git index versions...
src/vs/platform/environment/node/environmentService.ts(210,1): Bad whitespace indentation
File not formatted: src/vs/platform/environment/node/environmentService.ts

Hygiene failed with 2 errors. Check 'build/gulpfile.hygiene.js'.

> husky - pre-commit hook failed (add --no-verify to bypass)
> husky - to debug, use 'npm run precommit'

This output is specific to nvm, husky and our very own hygiene script. No matter what we do to fix this, it will all be specific heuristics for our own selfhost. It will still not help other users since they will have different tools outputting different errors using different syntaxes.
Also, you don't need to go Output > Git, that's what the Open Git Log button is for.
I argue that this is an issue which happens often to our team but very rarely in our user base.


fix(ecc-utils-design): import error

Description

fixes issue with importing the design package components.
Checklist

[ ] My code follows the contributing guidelines of this project.
[ ] I am aware that all my commits will be squashed into a single commit, using the PR title as the commit message.
[ ] I have performed a self-review of my own code.
[ ] I have commented my code in hard-to-understand areas.
[ ] I have updated the user-facing documentation to describe any new or changed behavior.
[ ] My changes generate no new warnings.
[ ] I have added tests that prove my fix is effective or that my feature works.
[ ] I have not reduced the existing code coverage.

Comments

@JaeAeich, check out this fix and merge if it looks good to you.


[Jammy] CF deployments

In order to migrate to Jammy stemcells, we want to update our Cloudfoundry deployment to use Jammy
Acceptance Criteria

Cloudfoundry deployment is updated to use Jammy stemcell

Security considerations
None
Implementation sketch

[ ] Create PR to update pipeline for CF development to remove opsfiles that are keeping us on Bionic stemcells: https://github.com/cloud-gov/cg-deploy-cf/blob/a74391adb947874fbb709eb997958eeca30627c6/ci/pipeline.yml#L41
[ ] Deploy CF development: https://ci.fr.cloud.gov/teams/main/pipelines/deploy-cf/jobs/deploy-cf-development
[ ] Observe health of CF development:

Request https://api.dev.us-gov-west-1.aws-us-gov.cloud.gov/ to verify Cloud Controller is working
Use the CF CLI to login to the dev environment and verify that you can:

Create an org
Create a space
Push an app
Add a user
Create a brokered database

[ ] After a couple days of observing a healthy status for CF staging, create PR to update pipeline for CF staging to remove opsfiles that are keeping us on Bionic stemcells: https://github.com/cloud-gov/cg-deploy-cf/blob/a74391adb947874fbb709eb997958eeca30627c6/ci/pipeline.yml#L535
[ ] Deploy CF staging: https://ci.fr.cloud.gov/teams/main/pipelines/deploy-cf/jobs/deploy-cf-staging
[ ] Observe health of CF staging

Request https://api.fr-stage.cloud.gov/ to verify Cloud Controller is working
Use the CF CLI to login to the staging environment and verify that you can:

Create an org
Create a space
Push an app
Add a user
Create a brokered database

[ ] After a week of observing a healthy status for CF staging:

[ ] Create PR to update pipeline for CF prod to remove opsfiles that are keeping us on Bionic stemcells: https://github.com/cloud-gov/cg-deploy-cf/blob/a74391adb947874fbb709eb997958eeca30627c6/ci/pipeline.yml#L1040
[ ] Deploy changes to CF prod: https://ci.fr.cloud.gov/teams/main/pipelines/deploy-cf/jobs/deploy-cf-production

[ ] Confirm whether CF prod is working by:

Request https://api.fr.cloud.gov/ to verify Cloud Controller is working
Use the CF CLI to login to the staging environment and verify that you can:

Create an org
Create a space
Push an app
Add a user
Create a brokered database

This is deployed in production


关于数据预处理的问题

您好 您在代码中给出的源域和目标域数据 经过归一化处理吗
为什么我的数据归一化处理后的准确率和您的相差10%个点

Hi the data is not normalized. Depending on your normalization technique, information might get lost. It also may affect the hyper-parameter needed for the domain adaptation.

您好 我有一个疑问 就是必须给数据做FFT处理吗 为什么不做fft的准确率很低 （大概只有0.34） 做fft的好处是什么呢

The current network architecture is designed to take in FFT data. Most bearing faults can be identified easier in the frequency space, this is also what human experts do in real life. There are papers which target directly deal with the raw data, but it is our of the scope of this paper.


Fixed Riley's picture

Originally was accessing fisherr.png; should have accessed fisherr.jpg

Good catch!


build(deps): bump react-native-reanimated from 2.13 to 3.3.0

This PR resolves PHIRE-125
Description
Upgrades reanimated in eigen + palette
waiting first for the palette PR  to get merged to update the version here
⚠ We will first trigger a beta from this PR and test it out and then merge to avoid reanimated crashes that we had in previous attempts

PR Checklist

[x] I have tested my changes on iOS and Android.
[x] I hid my changes behind a feature flag, or they don't need one.
[x] I have included screenshots or videos, or I have not changed the UI.
[x] I have added tests, or my changes don't require any.
[x] I added an app state migration, or my changes do not require one.
[x] I have documented any follow-up work that this PR will require, or it does not require any.
[x] I have added a changelog entry below, or my changes do not require one.

To the reviewers 👀

[ ] I would like at least one of the reviewers to run this PR on the simulator or device.

Changelog updates
Changelog updates

Cross-platform user-facing changes

iOS user-facing changes

Android user-facing changes

Dev changes

build(deps): bump react-native-reanimated from 2.13 to 3.3.0 - gkartalis

Need help with something? Have a look at our docs, or get in touch with us.

This PR contains the following changes:

Dev changes (build(deps): bump react-native-reanimated from 2.13 to 3.3.0 - gkartalis)

  Generated by :no_entry_sign: dangerJS against eb2e9fcc0dcb5ee516823024486e8dc9c9bbe6e0

Amazing y'all 🎉


You now have push access to the Piggey/Wspolbiezne repository.

Revoke push access from my account, please.

It is up to you. Not sure what the problem really is. Not sure but previously I did it for Microsoft guys in my private repository.  Unfortunately, I have no time to study it in depth. Anyway, there must be no doubt that it is only your contribution.


Fail to Connect to Database - Could you include SQLite files instead?

Hi,
This looks like a great project and I'd like to consider using it my research, however neither example (imdb.py or trains.py) works because it is not possible to connect to the mysql server you specify:
# Provide connection information
connection = DBConnection(
    'ilp',  # User
    'ilp123',  # Password
    'workflow.ijs.si',  # Host
    'imdb_top',  # Database
    vendor=DBVendor.MySQL
)

Would you consider exporting the database data into a sqlite file and then uploading to the github repository? Or check that the connection to the MySQL server is open? I tried connecting from the United States.
Thank you for considering this!

Hello, albeit late, python3-new branch now operates on local files (more or less). You simply download the file by using one of the converters (https://github.com/xflows/rdm/blob/python3-new/benchmark_studies/get_datasets.py). This generates a pickle file, which can easily  be loaded from wherever one wants.
Hope this helps.

It is now possible to read SQLite databases and CSV files. Check the documentation here. Just make sure that you install the latest version from PyPi.


fix issue 16238 - std.string.lastIndexOf fails compilation with -de

Lesson to learn here: We should be testing with -de.

this one is trivial and obvious.

Auto-merge toggled on


Added Metamaze as KEDA user

Signed-off-by: Antonio Peixe<EMAIL_ADDRESS>

@AntPeixe We are looking for KEDA end-users who want to be interviewed by CNCF for our CNCF Graduation proposal.
Are you willing to share about your experiences on using KEDA? This can be anonymously if need be.
If so, feel free to fill in https://forms.gle/91dD4RVxifWsS2hc7

Thank you!


Introduce DecodeFrom and EncodeReader

The buckets byte slice is the biggest part of the the memory used by the filter,
and might be several of GBs.
Common usage of a filter is in an environment with limited RAM size
based on the filter size, load it to memory on startup and dump it to
disk on teardown.
Currently the Encode and Decode methods duplicates the byte slice,
which makes the memory usage at the loading and dumping time to be (at
least) twice the filter size.
This commit introduces a new method for dumping the filter using a reader
of the internal byte slice, and a method for loading the filter based on
already fetched encoded bytes (from disk, network) and use them
internaly instead of making a copy.

formatting.

i'd like to merge the Reader part, we can discuss the Size part in the future, can you split this into two MR?

I suggest to keep the SizeInBytes without the metadata part and introduce EncodedSizeInBytes method that returns the size including the metadata. Sounds good?

EncodedSizeInBytes

this is okay too

I suggest to keep the SizeInBytes without the metadata part and introduce EncodedSizeInBytes method that returns the size including the metadata. Sounds good?

this is okay too

Now reader returns also the size, so we can prepare the memory in advance.

Would you like to create a new tag?


enhance compatibility of honor type

fixes #237

Sorry I was on my Chinese new year leave and just get back.
Yeah I do agree this should raise exact error with enough information for debugging.

Could you just run male style on your branch so we can merge this?

hi, I just noticed the existence of this pr......
I've fixed the linting issue related to this pr, but there seems to be more on other code

Seems like the checks are all passing now, thanks again!


DO NOT MERGE

Used for running tests every push to the 3.0 preview branch.
DO NOT MERGE

Seems like CI is failing because the Travis config has not been updated.

List of related issues:
Polymer/polymer-modulizer#368

import href tests fail and will always fail.

Closed. working branch is 3.x-tests


Mistakes on Plone 6 training > 42. Volto Actions and Component State

On page Plone 6 > 42. Volto Actions and Component State, there are some typos:
Successfull should be successful
endpint should be endpoint
definitly should be definitely

@Azzam1503 GitHub did not auto-close this. I think you need to put the GitHub comment as the first comment, which GitHub calls "description". Subsequent comments have no effect. TIL.


Proposal: Add similar to operator

Is your feature request related to a problem or challenge? Please describe what you are trying to do.
Add support for the SIMILAR TO operator like:
string SIMILAR TO pattern [ESCAPE escape-character]
string NOT SIMILAR TO pattern [ESCAPE escape-character]

(This section helps Arrow developers understand the context and why for this feature, in addition to  the what)
Describe the solution you'd like
Support this sql syntax where currently users would see a parser error Expected end of statement, found: SIMILAR
Describe alternatives you've considered
There is some overlap between the LIKE operator and SIMILAR though the regex interpretation might be slightly different.
Additional context
Syntax from the postgresql documentation: https://www.postgresql.org/docs/current/functions-matching.html.
Came up while working on tests in the dask-sql project.

Seems reasonable to me

Nice feature for datafusion core.
Do you have a plan to implement it?
@ayushdg

I am planning on implementing this but also happy if anyone else wants to pick it up

sqlparser support was added here: https://github.com/sqlparser-rs/sqlparser-rs/pull/569
I'll try and get a new release of that library out in a day or two

This is now being tracked in https://github.com/apache/arrow-datafusion/issues/3099


Firefox workaround for no background-position-x/y

Many people don't realise that background-position-x/y is achievable in Firefox, so I thought I'd add a note and some self-promotion by linking to one of my Stack Overflow answers from a while ago.  If that's an issue, feel free to remove it but I think it's helpful in any case.

Cool, thanks!


Make snippets java/basic, tutorial/taskOnlyIf work with configuration ...caching

The onlyIf clauses are evaluated before the execution time even when running from the cache, so they must not capture script instance or reference project methods. Moreover, the code should not access Task.getProject, as the returned project instance is incomplete when running from the cache.
The change makes onlyIf predicates to only capture property providers which is well supported by the configuration cache. Additionally, an integration test is updated to ensure that no access to the incomplete result of Task.getProject happens.
Part of #21027

@bot-gradle test this

OK, I've already triggered the following builds for you:

PullRequestFeedback build

@bot-gradle test and merge

OK, I've already triggered a build for you.

Pre-tested commit build failed.

OK, I've already triggered a build for you.


Enable modules to force link their entire static lib

This enables Kubos modules to surround their static lib with -Wl,--whole-archive and -Wl,--no-whole-archive, forcing the linker to keep all symbols in the static lib (needed for the additional CSP slash commands)
I tried to keep the amount of copy-pasted code to a minimum, so I first subclass and then replace the super class in override module. LMK if this works..
This pull request needs to be merged for kubostech/kubos#34
/cc @kubostech/devs

Since this has been approved for a couple of days I am merging this to clean up our open PR's.


Why are you using Short and not Unsigned-Short?

While making my program I encountered the error "nbtlib.tag.OutOfRange: Short(35116) is out of range"
Having studied the structure of the schematic, I found that it supports UShort, but why do you use Short?
Is it possible to somehow increase the limit to 65535?

Hi!
It's because uShorts arent supported by the NBT format.

And there is no way to increase the limit at all?

Just checked, never realised it was unsigned short instead of short. The problem is that NBTLib only supports Shorts and technically Minecraft as well, but you can still interpret the bits as unsigned. So you have to turn your undigned short into a signed short without changing the bits, which I never thought of but that would be very easy to implement.
Not sure if I'll ever do it though as I dont want the burden of maintaining this lib, but if you know how to encode NBTs using nbtlib I hope this message could be enough of a guidance on how to fix it!


Support for net40 in Thoth.Json.Net

I have an app using net40 and would like to use Thoth.Json for serialisation.
Currently the project supports net46 - do you think it would be reasonable to add support for net40 as well?

I don't have much experience of .Net but if Newtonsoft is available for this version it's should be do-able.
I am finishing the split of this repo this evening in theory and after that I can take a look at this issue or accept PR again.

I'm happy to submit a PR - will start looking into what needs to be done

I managed to hack out a net40 nupkg for Thoth.Json.Net - https://github.com/theimowski/Thoth/commit/c445ba75f94f4c17e20c1c5315d1a9db50fc6e0e
For now I'll just embed the nupkg for my project.
Let me know when you split the repository so that I can work on cleaning up the change and submit a PR to officially support net40

I moved this issue to another repository, and further work will take place there.


How to change IML MDT configuration when restore MDT with a new device

Description
I use doc http://doc.lustre.org/lustre_manual.xhtml#dbdoclet.restore_target_filesystem to restore MDT with a new device, but i don't know how to change IML configuration about MDT
Repro

backup MDT mount with ldiskfs type
restore MDT with a new device
I can manual to mount MDT, but can not start MDT in IML, because it's configuration have not changed to use new device

Version
What version of IML?
<IP_ADDRESS>
What Operating System?
RHEL
What Operating System version?
7.4

hello, could I ask whether you are using IML in managed or monitored mode (the profile you used when installing the servers in the UI)?

managed mode

can I also please request the error messages/symptoms of failure you are seeing when you try to start the modified MDT?

so I can replicate your issue locally, please attach the sos-report (IML diagnostics) as per the documentation: https://intel-hpdd.github.io/Online-Help/docs/Install_Guide/ig_ch_16_appD_getting_help.html

just for your information we are planning to integrate this feature (target device change) into the project so if you're interested in helping move this along then providing more information would help. many thanks


Feat:Adding more css to background

Describe the feature
Right now,the black solid background is not looking good for such  mood refreshing application.So,I want to add more aesthetic background to page. @Satyam1923 Willing to work upon this issue.
Add ScreenShots

Record

[X] I agree to follow this project's Code of Conduct
[X] I have checked the existing issues
[X] I'm a GSSOC'24 contributor
[X] I want to work on this issue

@Garima-149 fine

@Satyam1923 Should I make changes again and make another PR after reviewing it from you?

Please assign this issue to me. I am a Technical Executive at the IEEE CUIET Organization.
I would like to work on this issue. Providing you with the best results. I have already worked on projects like this and would like to contribute.

@Satyam1923  Please check this.If it is ok or need changes?


[task/ECP-319] - remove references to GOVUK Verify from Azure scripts

JIRA ECP-319
Remove the from the Azure resource groups and templates references to:

Signing Key
SAML_PRIMARY_ENCRYPTION_KEY
SAML_SECONDARY_ENCRYPTION_KEY
vspDockerImageTag
vspAppServiceDockerImage
vspAppServiceRuntimeStack
vspAppServicePlanSkuTier
vspAppServicePlanSkuSize
vspAppServicePlanSkuFamily
vspAppServicePlanSkuCapacity
VSP.VERIFY_ENVIRONMENT
VSP.EUROPEAN_IDENTITY_ENABLED
VSP.VERIFY_ENTITY_ID
GOVUK_VERIFY_VSP_HOST
vspAppServicePlanId
vspAppServicePlanName
vspAppServiceName
vspAppServiceId
verifyHubPossibleOutboundIpAddresses
vspDeploymentName
vspAppServiceWebTestDeploymentName
vspAppServiceWebTestName

Remove the vsp specific json file
Remove from Alerts

looks good from an infra perspective


fix(api): add ledger index to output queries

Fixes #319

Created #412 to track a potential change proposed by @Alex6323


version_number.h Bazel build causes "Missing Terminating '"' character

version_number.h Bazel build causes "Missing Terminating '"' character
Hello!
This is probably an issue with my environment, considering I didn't see this issue reported anywhere else, but I am getting stuck and thought this a good place to ask.
I am getting an error when trying to build using the run_envoy_docker.sh script. The error is occurring when generating version_number.h, and it says "Missing terminating '"' character".
I have posted a stack overflow question with screenshots which outlines this in more detail (see link below).
I am running the script in WSL2 with a Ubuntu 20.04 distro.
Anyone have any thoughts/ideas?

(https://stackoverflow.com/questions/69981580/genrule-cmd-causes-missing-terminating-character-when-building-envoy-w-baz?fbclid=IwAR3TVH3UgewQ4DaXLLbnfYxGHMKj39QXOH9dcHA1A9cLV4NfX537D6Jt4O0)

I've never had any problems like this one. But maybe your version of bazel doesn't strip the newline from cat VERSION. You can try to remove it manually from the file with
$ echo -n "1.21.0-dev" > VERSION


Use pointer cursor for flags table rows

Description
It looks a bit weird to not have the pointer cursor when clicking on objects that lead to actins or other pages.
For this case, clicking anywhere in the TR element, leads you to edit that flag.
Motivation and Context
UX
Types of changes

[ ] Bug fix (non-breaking change which fixes an issue)
[x] New feature (non-breaking change which adds functionality)
[ ] Breaking change (fix or feature that would cause existing functionality to change)

Checklist:

[x] My code follows the code style of this project.
[ ] ~My change requires a change to the documentation.~
[ ] ~I have updated the documentation accordingly.~
[ ] ~I have added tests to cover my changes.~
[x] All new and existing tests passed.

Codecov Report

Merging #168 into master will not change coverage.
The diff coverage is n/a.

@@          Coverage Diff          @@
##           master   #168   +/-   ##
=====================================
  Coverage      93%    93%
=====================================
  Files          25     25
  Lines        1330   1330
=====================================
  Hits         1237   1237
  Misses         63     63
  Partials       30     30

Continue to review full report at Codecov.

Legend - Click here to learn more
Δ = absolute <relative> (impact), ø = not affected, ? = missing data
Powered by Codecov. Last update 20ea2c5...3b84fc3. Read the comment docs.


Rename the plugin to Entra ID

Is your feature request related to a problem? Please describe.
Microsoft recently renamed the Azure AD to Microsoft Entra ID.
Describe the solution you'd like
The plugin needs to be renamed to use Entra ID instead of Azure AD.
Describe alternatives you've considered
A clear and concise description of any alternative solutions or features you've considered.
Additional context
https://learn.microsoft.com/en-gb/azure/active-directory/fundamentals/new-name

I think we'd probably deprecate this plugin and create a new plugin with a new plugin name, new table names, etc., to allow for a clean switch and to avoid breaking changes in users' queries and our mods (similar to what we had done for the Turbot Guardrails plugin).


Triangle example only draws blue window

Version of vulkano:
commit 5233221ad908bfffbd9379da025e8cb62c9a84ea
Author: Lucas Kent<EMAIL_ADDRESS>Date:   Mon Jan 7 07:44:03 2019 +1100
Revert adding windows to CI, its not ready yet (#1149)

OS: OS X 10.12.6 (16G29) (macOS Sierra)

GPU: Intel(R) Iris(TM) Graphics 6100 (type: DiscreteGpu)

Vulkan: vulkansdk-macos-<IP_ADDRESS>

Issue
Triangle example only draws blue screen
How to reproduce
examples$ !cargo
cargo run --bin triangle
    Finished dev [unoptimized + debuginfo] target(s) in 0.18s
     Running `/Users/andrewl/rust/vulkano/target/debug/triangle`
Using device: Intel(R) Iris(TM) Graphics 6100 (type: DiscreteGpu)

See window only being blue.


Custom script deployment

Because Azure RM powershell 2.4.0 version doesn't allow to use hybrid profile, Azure RM powershell 2.3.0 should be used with custom script deployment. Additionaly, since Azure Stack powershell 1.7.0 is incompatible with Azure RM 2.3.0, Azure Stack powershell 1.5.0 or 1.6.0 must be used in conjunction with Azure RM 2.3.0.

Document Details
⚠ Do not edit this section. It is required for docs.microsoft.com ➟ GitHub issue linking.

ID: dabc86bd-3770-5832-7fa5-d28856998ae6
Version Independent ID: cbdb8c6f-ad4d-9e3d-a490-f1348b5ccdfa
Content: Using SQL databases on Azure Stack
Content Source: azure-stack/operator/azure-stack-sql-resource-provider-deploy.md
Service: azure-stack
GitHub Login: @jeffgilb
Microsoft Alias: jeffgilb

@bsezgin Thanks for the feedback! I have assigned the issue to the content author to evaluate and update as appropriate. This is also similar to #18.

@bsezgin Thanks for your feedback. Please follow the instructions for installing API Profiles with PowerShell https://docs.microsoft.com/en-us/azure-stack/operator/azure-stack-powershell-install. #please-close

Thank you.

Thanks for sharing your feedback! @bsezgin
While installing SQL RP, the specific PowerShell profile and AzureStack module should be installed. Otherwise you'll get error during the deployment.
https://docs.microsoft.com/en-us/azure-stack/operator/azure-stack-sql-resource-provider-deploy#deploy-the-sql-resource-provider-using-a-custom-script
== Install the AzureRM.Bootstrapper module, set the profile and install the AzureStack module ==
== Note that this might not be the most currently available version of Azure Stack PowerShell ==
Install-Module -Name AzureRm.BootStrapper -Force
Use-AzureRmProfile -Profile 2018-03-01-hybrid -Force
Install-Module -Name AzureStack -RequiredVersion 1.6.0


how can we fetch random data from firbase

is there any possibilities we fetch data from fire-base  in ios using swift randomly....

Please ask this question on Stack Overflow.


chore: For compute_kzg_proof_multi remove remainder polynomial when in monomial form

Computing the quotient polynomial in monomial form means we can ignore the remainder term. In #3695 I can extend the comments to explain the transformation. Putting this up for now, so that we can check the performance diff.

Good one!
Agreed that we should doc this optimization in some way. Arkworks docs it like this.
Seems like also the "Compute the quotient polynomial directly in evaluation form" comment above is wrong? Anyhow, let's handle docs in the other PR.

Yep! https://github.com/ethereum/consensus-specs/pull/3695 fixes the comments in that function -- once we merge it in, I can note that we do not need to compute the remainder polynomial


Kafka-Manager Web UI not loading.

I have started kafka-manager on centos VM and below are its logs.
[info] o.a.z.ZooKeeper - Client environment:java.library.path=/usr/java/packages/lib/amd64:/usr/lib64:/lib64:/lib:/usr/lib
[info] o.a.z.ZooKeeper - Client environment:java.io.tmpdir=/tmp
[info] o.a.z.ZooKeeper - Client environment:java.compiler=
[info] o.a.z.ZooKeeper - Client environment:os.name=Linux
[info] o.a.z.ZooKeeper - Client environment:os.arch=amd64
[info] o.a.z.ZooKeeper - Client environment:os.version=3.10.0-862.el7.x86_64
[info] o.a.z.ZooKeeper - Client environment:user.name=root
[info] o.a.z.ZooKeeper - Client environment:user.home=/root
[info] o.a.z.ZooKeeper - Client environment:user.dir=/root/Confluent_kafka/kafka-manager-<IP_ADDRESS>
[info] o.a.z.ZooKeeper - Initiating client connection, connectString=localhost:3181 sessionTimeout=60000 watcher=org.apache.curator.ConnectionState@73687e45
[info] o.a.z.ClientCnxn - Opening socket connection to server localhost/<IP_ADDRESS>:3181. Will not attempt to authenticate using SASL (unknown error)
[info] o.a.z.ClientCnxn - Socket connection established to localhost/<IP_ADDRESS>:3181, initiating session
[info] k.m.a.KafkaManagerActor - zk=localhost:3181
[info] k.m.a.KafkaManagerActor - baseZkPath=/kafka-manager
[info] o.a.z.ClientCnxn - Session establishment complete on server localhost/<IP_ADDRESS>:3181, sessionid = 0x16565ff95660000, negotiated timeout = 60000
[info] k.m.a.KafkaManagerActor - Started actor akka://kafka-manager-system/user/kafka-manager
[info] k.m.a.KafkaManagerActor - Starting delete clusters path cache...
[info] k.m.a.DeleteClusterActor - Started actor akka://kafka-manager-system/user/kafka-manager/delete-cluster
[info] k.m.a.DeleteClusterActor - Starting delete clusters path cache...
[info] k.m.a.KafkaManagerActor - Starting kafka manager path cache...
[info] k.m.a.DeleteClusterActor - Adding kafka manager path cache listener...
[info] k.m.a.DeleteClusterActor - Scheduling updater for 10 seconds
[info] k.m.a.KafkaManagerActor - Adding kafka manager path cache listener...
[info] play.api.Play - Application started (Prod)
[info] p.c.s.NettyServer - Listening for HTTP on /<IP_ADDRESS>:9000
[info] k.m.a.KafkaManagerActor - Updating internal state...
[info] k.m.a.KafkaManagerActor - Updating internal state...
[info] k.m.a.KafkaManagerActor - Updating internal state...
[info] k.m.a.KafkaManagerActor - Shutting down kafka manager
Tha kafka manager starts perfectly but the WEB UI does not load at all.
The IPV6 is disabled and the netstat shows this
tcp        0      0 <IP_ADDRESS>:9000            <IP_ADDRESS>:*               LISTEN      2670/java
Can someone help in this.
Thanks,
Anuja

Incase you are using supervisord and this issue comes up - try removing the kafka-manager/RUNNING_PID file, and restart the process.

2023-02-09 14:04:38,728 - [INFO] k.m.a.KafkaManagerActor - baseZkPath=/kafka-manager 2023-02-09 14:04:38,747 - [INFO] o.a.z.ClientCnxn - Opening socket connection to server localhost/<IP_ADDRESS>:2181. Will not attempt to authenticate using SASL (unknown error) 2023-02-09 14:04:38,764 - [INFO] o.a.z.ClientCnxn - Socket connection established, initiating session, client: /<IP_ADDRESS>:53978, server: localhost/<IP_ADDRESS>:2181 2023-02-09 14:04:38,844 - [INFO] o.a.z.ClientCnxn - Session establishment complete on server localhost/<IP_ADDRESS>:2181, sessionid = 0x100222a1cbf0001, negotiated timeout = 60000 2023-02-09 14:04:38,911 - [INFO] k.m.a.DeleteClusterActor - Started actor akka://kafka-manager-system/user/kafka-manager/delete-cluster 2023-02-09 14:04:38,912 - [INFO] k.m.a.DeleteClusterActor - Starting delete clusters path cache... 2023-02-09 14:04:38,916 - [INFO] k.m.a.KafkaManagerActor - Started actor akka://kafka-manager-system/user/kafka-manager 2023-02-09 14:04:38,917 - [INFO] k.m.a.KafkaManagerActor - Starting delete clusters path cache... 2023-02-09 14:04:38,935 - [INFO] k.m.a.KafkaManagerActor - Starting kafka manager path cache... 2023-02-09 14:04:38,942 - [INFO] k.m.a.DeleteClusterActor - Adding kafka manager path cache listener... 2023-02-09 14:04:38,942 - [INFO] k.m.a.DeleteClusterActor - Scheduling updater for 10 seconds 2023-02-09 14:04:38,950 - [INFO] k.m.a.KafkaManagerActor - Adding kafka manager path cache listener... 2023-02-09 14:04:39,245 - [INFO] play.api.Play - Application started (Prod) 2023-02-09 14:04:39,935 - [INFO] p.c.s.AkkaHttpServer - Listening for HTTP on /0:0:0:0:0:0:0:0:9000
The WebUI doesnt load on http://<SERVER_IP>:9000
netstat shows
Active Internet connections (w/o servers) Proto Recv-Q Send-Q Local Address           Foreign Address         State       tcp        0      0 localhost:58050         localhost:9000          ESTABLISHED tcp6       1      0 localhost:42842         okoyama:9092            CLOSE_WAIT  tcp6      78      0 localhost:9000          localhost:58050         ESTABLISHED tcp6       1      0 localhost:44012         localhost:3000          CLOSE_WAIT  tcp6       0      0 localhost:2181          localhost:36328         ESTABLISHED tcp6       1      0 localhost:53978         localhost:2181          CLOSE_WAIT  tcp6       0      0 localhost:36328         localhost:2181          ESTABLISHED

I have 2 specific queries in addition to the above:

How to stop/restart the CMAK
How to uninstall the CMAK & delete all related files.


Add support for Radxa CM3 on Raspberry Pi Compute Module 4 IO Board

Changelog-entry: Add support for Radxa CM3 on Raspberry Pi Compute Module 4 IO Board
Signed-off-by: Florin Sarbu<EMAIL_ADDRESS>

@balena-ci I self-certify!


IOS simple No sound,

I don't know what went wrong. I ran your sample.
And I only open the mic permission on ios, but the playback has no sound, and the playback does not stop, how should I find the problem?
https://github.com/jfversluis/Plugin.Maui.Audio/assets/35278902/c0453745-358a-4a2f-b04b-be6a8c979c72

I have only been able to test this using an iOS emulator but it worked fine here. Is your device on mute? Or are there any errors/warnings being logged in the application output/debug tab?

I have only been able to test this using an iOS emulator but it worked fine here. Is your device on mute? Or are there any errors/warnings being logged in the application output/debug tab?

I found where bug is.
Normal operation after change
@AudioRecorder.macios.cs     line24
var error = audioSession.SetCategory(AVAudioSessionCategory.Record);
change
var error = audioSession.SetCategory(AVAudioSessionCategory.PlayAndRecord);
AudioPlayer has bug too,
1: Close app frequently.
2:Occasionally there is no sound.

For me, audio playback is silent on iPhone Device, but using iPhone Simulator, the playback is heard

@tomShoutTheSecond on the physical device is the silent switch on the side on?

If only people would read the docs 🤪 yeah we need some good way to figure this out for sure.

If only people would read the docs 🤪 yeah we need some good way to figure this out for sure.

Agreed (guiltily on both counts :/) I can't think of a reason you'd want playback to obey silent mode by default (none of the other audio-based apps on my device seem to) but if you don't want to implement this as standard, reporting a failure would sure help. As it stands, when silent is enabled, the Play command runs without error and the PlaybackEnded callback will never fire :(

Hm yeah the option might be something. Or just have a bit ugly, but functional property: IgnoreAppleSilentSwitch?

This would be ideal, thanks!

Hm yeah the option might be something. Or just have a bit ugly, but functional property: IgnoreAppleSilentSwitch?

My fear there is that it might not fit all use cases. AVAudioSessionCategory has quite a few options that offer different functionality. I was wondering whether we could allow the developer to define this. Potentially different options for playback vs record. What do you think?


Revised interface

This PR changes how users interact with this application on a superficial, but still beneficial level. This enhances menuing, gives the user more control over how the applications starts, provides some basic piggy-backing on previous setup from ASHIRT. A number of quality-of-live improvements have also been made to the main package and it's decedents to help future development.
Depends on PR #7
Changes:

A lot. I'll fill out the list

Reviewing note: A lot of the code changed drastically. For many files, it may be better to evaluate based on what's currently there, rather than comparing to what was there, as some changes have been more revolutionary than evolutionary.

I confirm that this contribution is made under the terms of the license found in the root directory of this repository's source tree and that I have the authority necessary to make this contribution on behalf of its copyright owner.

Regarding the listed issues:

ctrl+c still doesn't quit the app when in a menu

This has been revised, but won't necessarily work like an exit. Instead, it's analog is more like a back button. In general, it will chose to do whatever it can to get back to the main menu as fast as possible. So, in the main menu, it'll work like an exit. When setting options and so forth, it'll work like a cancel, and back out of all of that "line of questioning", etc. So, repeated ^c/^d will eventually exit the application, but not instantly (assuming you aren't recording). This can obviously be revised to instantly exit, but I thought this was a good first step.

in first run menus secret key and save path prompt are re-printed when an arrow key is input (also happens when pasting)

I believe this is due to these fields just being quite long generally. Once the line is longer than the width of the console, any action does this. I think this is normal, but now I'm questioning where I've seen this before. I'll look for some examples, but I think this may be out of our control generally. There is an option to try to represent the default values as shorter strings something like deep/path/.../file, though this won't actually solve the problem, just mitigate it.

backspace causes a bell in first run menus; unsure about other menus. Other prompts seem fine

Still looking into this one, but this could just be a terminal emulator issue -- I can't reproduce it in linux.

configuration file doesn't get saved and does first run every time

This is fixed. We were writing to a directory that didn't yet exist.

Nil pointer during network check if you ctrl+c through the first run menus

This should now be impossible to happen, as ctrl+c will just exit in first run menus.


Add option to get multiple OnClick methods

Hi @TomasKypta! This PR implements the behaviour specified here #99.

+1

Here an image of how it looks like:


HTMLBuilder Column Edit?

Summary of problem or feature request
Hello,
I'm using the HTMLBuilder currently and trying to find a way to edit columns (to link/hyperlink one of the columns), is there any way to do this currently?
Code snippet of problem

System details

Operating System Ubuntu 20.04
PHP Version 8.1
Laravel Version 9
Laravel-Datatables Version 9

Figured out, combining these 2 gets it done,

https://yajrabox.com/docs/laravel-datatables/master/edit-column
https://yajrabox.com/docs/laravel-datatables/master/raw-columns

Closing.


[10.x] Add POSIX compliant cleanup to artisan serve

Fixes #49941

@Tofandel could you please add a full description to your PR and not just link to an issue? (See the template when you open PR's). Thanks!

You might be able to use the built in signal abstractions: https://laravel.com/docs/10.x/artisan#signal-handling

@rojtjo Indeed it's much better, didn't know about it

Heya. We got a report that this doesn't works on Windows: https://github.com/laravel/framework/issues/50022 so just skipping that there for now: https://github.com/laravel/framework/pull/50023

It would be the case if pcntl wasn't activated in any env I think
I got a false sense of security using the wrapper, that it would only run with pcntl enabled, but I forgot that the constants would be evaluated even if the callback doesn't run
https://github.com/laravel/framework/blob/1d0f002172d1570389e72fb474d16a6996fc943d/src/Illuminate/Console/Concerns/InteractsWithSignals.php#L26
A quick fix would be to wrap the ->trap in Signals::whenAvailable(fn () => $this->trap())
A future improvement for trap then might be to provide the signals in a callback as well


Modified to check if qualified for AE connections

Coverage remained the same at 72.505% when pulling cfa9f05533a563797242125ced4781f7daf6691d on yitam:test569 into 1ba1f21eb84960455893b78c4e3fe5c31770bc2e on Microsoft:dev.

Codecov Report

Merging #967 into dev will not change coverage.
The diff coverage is n/a.

@@           Coverage Diff           @@
##              dev     #967   +/-   ##
=======================================
  Coverage   80.62%   80.62%
=======================================
  Files          25       25
  Lines        7758     7758
=======================================
  Hits         6255     6255
  Misses       1503     1503

Impacted Files
Coverage Δ

...4/x86/php-7.1.27-src/ext/pdo_sqlsrv/pdo_parser.cpp

...6/php-7.1.27-src/ext/sqlsrv/shared/core_stream.cpp

.../php-7.1.27-src/ext/sqlsrv/shared/core_results.cpp

...c14/x86/php-7.1.27-src/ext/sqlsrv/php_sqlsrv_int.h

...php-7.1.27-src/ext/pdo_sqlsrv/php_pdo_sqlsrv_int.h

...phpdev/vc14/x86/php-7.1.27-src/ext/sqlsrv/stmt.cpp

...x86/php-7.1.27-src/ext/sqlsrv/shared/core_sqlsrv.h

...php-7.1.27-src/ext/pdo_sqlsrv/shared/core_sqlsrv.h

...x86/php-7.1.27-src/ext/sqlsrv/shared/core_init.cpp

...phpdev/vc14/x86/php-7.1.27-src/ext/sqlsrv/init.cpp

... and 40 more

Continue to review full report at Codecov.

Legend - Click here to learn more
Δ = absolute <relative> (impact), ø = not affected, ? = missing data
Powered by Codecov. Last update 1ba1f21...cfa9f05. Read the comment docs.


[9.102.x-prod][Fix #3782] Properly resolving root dir in all CI environments (#3783)

Merge along with https://github.com/kiegroup/kogito-apps/pull/49
Backported from https://github.com/apache/incubator-kie-kogito-runtimes/pull/3783

We will need a CR2 because of SRVLOGIC-472, said that I'm merging this PR so it can be included.


gltfpack: Empty node names removed when compressed?

When I compress the model below, the output compressed file has no names for the top meshes when imported in things like Three.js or imported with GLTFast in Unity.

I used these commands as a test, neither fixed it
gltfpack -tc -i Asset_Bike.gltf -o Asset_Bike.glb -cc -ac
gltfpack -tc -i Asset_Bike.gltf -o Asset_Bike.glb -cc -ac -kn
Using this file as the gltf uncompressed, example compressed glb attached:
Downloads.zip

This also happens when using -tc only without -cc so in theory the mesh file should be untouched but instead the node names of the top objects are deleted when using: gltfpack -i Asset_Bike.gltf -o Asset_Bike.glb -tc

The behavior here is a little strange although mostly intentional... Here's what's happening, I believe:

The meshes always lose their names. gltfpack always reprocesses the entire scene, and it's unclear how to preserve mesh names under transformations like merging or instancing. However, I think the behavior you see isn't due to mesh names - it's due to node names.
When quantization is enabled, which it is by default (important for compression efficiency), the mesh nodes get a new, unnamed, node inserted under them to carry the dequantization matrix. See the following tree that gltf-viewer displays in console:

In Unity, what might be happening is that the skinned meshes get reparented to the root level because in glTF skinned meshes  don't inherit the transformation from the node they are attached to; gltfpack only adds this transform to work around Three.JS bugs with how culling works by default for skinned geometry
gltfpack without -kn will merge meshes between different nodes because it will assume node names are insignificant, so you just get a single skinned mesh attached at root level.

So, uhh, everything seems to sort of be working as designed, but I'm not sure what this leads to in your application. The general behavior of gltfpack (with -kn) is that it might insert intermediate nodes when they are required for correctness, but will never remove named nodes from the hierarchy. As such, code that is written using scene graph node names (not mesh names!) should still function correctly. But this could require changing the code a little bit, for example adjusting parameters of a mesh with a given name is best done by iterating through the subtree with a known node name instead, and processing all attached meshes there.
If you're using the most recent version of gltfpack (binary available in artifacts here https://github.com/zeux/meshoptimizer/actions/runs/4771373374, this wasn't released with a numbered release yet), you can use a new mode, -vpf, which will use a different way of representing positions that should still compress decently well, but should not disrupt the hierarchy as much. Accordingly, if you use gltfpack -kn -vpf, you should see a tree that mostly reflects the original tree. The mesh names will be lost, but the node names will be in tact as well as the hierarchy.

Currently in our Unity application, I am grabbing imported model names and appending animation to them from a separate file (to keep users from redownloading heavy model files, we separate out just the model and its various animations as separate files).
This is a bit of a hack but as you can see in the hierarchy of the model here, the empty nodes are renamed by GLTFast in Unity to Node-1, so I just check if the model name is 'Node-1' and search for a child called scene then search for a child of scene with the naming convention that we use which is 'Equipment_' then I rename the Node-1 objects to that Equipment_ title then everything works again.

However, that is just a hacky workaround for the behaviour seen here so I will investigate the build you linked and report my findings, thanks for the help.

The behavior here is a little strange although mostly intentional... Here's what's happening, I believe:

The meshes always lose their names. gltfpack always reprocesses the entire scene, and it's unclear how to preserve mesh names under transformations like merging or instancing. However, I think the behavior you see isn't due to mesh names - it's due to node names.
When quantization is enabled, which it is by default (important for compression efficiency), the mesh nodes get a new, unnamed, node inserted under them to carry the dequantization matrix. See the following tree that gltf-viewer displays in console:

In Unity, what might be happening is that the skinned meshes get reparented to the root level because in glTF skinned meshes  don't inherit the transformation from the node they are attached to; gltfpack only adds this transform to work around Three.JS bugs with how culling works by default for skinned geometry
gltfpack without -kn will merge meshes between different nodes because it will assume node names are insignificant, so you just get a single skinned mesh attached at root level.

So, uhh, everything seems to sort of be working as designed, but I'm not sure what this leads to in your application. The general behavior of gltfpack (with -kn) is that it might insert intermediate nodes when they are required for correctness, but will never remove named nodes from the hierarchy. As such, code that is written using scene graph node names (not mesh names!) should still function correctly. But this could require changing the code a little bit, for example adjusting parameters of a mesh with a given name is best done by iterating through the subtree with a known node name instead, and processing all attached meshes there.
If you're using the most recent version of gltfpack (binary available in artifacts here https://github.com/zeux/meshoptimizer/actions/runs/4771373374, this wasn't released with a numbered release yet), you can use a new mode, -vpf, which will use a different way of representing positions that should still compress decently well, but should not disrupt the hierarchy as much. Accordingly, if you use gltfpack -kn -vpf, you should see a tree that mostly reflects the original tree. The mesh names will be lost, but the node names will be in tact as well as the hierarchy.

I can confirm using the  gltfpack -kn -vpf, you suggested with that unreleased build fixed our issue! object node names remained intact when compressing!

Perfect - note that you should be able to use 0.19 (https://github.com/zeux/meshoptimizer/releases/tag/v0.19) that just came out a few days ago, as it has this feature.

I tried via the npm package 0.19 but get this error when running this command which worked fine with the standalone .exe:
gltfpack -i Asset_Chains_01.gltf -o test.glb -tc -kn -vpf
Error: gltfpack was built without BasisU support, texture compression is not available
Note: node.js builds do not support BasisU due to lack of platform features; download a native build from https://github.com/zeux/meshoptimizer/releases

Yes, for texture compression, you need to use native builds - see the link above.


format running_queries output

The script does not help a lot on reading the queries we are running at this moment. Please format the output :sweat:

same with check_query.py

I guess @oriolbx already fixed it.
Closing it.


Add a github action to get automated changelogs

Closes #226
Successful PR Checklist:

[x] Create the PR labels
[ ] Tests

[x] (not applicable?)

[x] Documentation < Contibuting doc needs a words about this.

[ ] (not applicable?)

[x] Had a good time contributing?

I see that a 0.10.0 draft release was created, although none of the PRs associated with that release have the PR:minor label. So I am wondering why 0.9.1 was not picked as the next release version.
I'm also wondering what would happen if there was a 0.10.0 draft release and we actually pushed a 0.9.1 tag. I admit that this question is not related to Release Drafter.

I've already changed the label names, but I'm still waiting for a review on https://github.com/peopledoc/procrastinate/pull/243 so that's why drafter is kinda all over the place.
Also, it is instructed to issue a minor release by default https://github.com/peopledoc/procrastinate/blob/8e05f4746018003d187991175207180b5c9a8058/.github/release-drafter.yml#L14

I'm also wondering what would happen if there was a 0.10.0 draft release and we actually pushed a 0.9.1 tag. I admit that this question is not related to Release Drafter.

Didn't understand your question, sorry...

Didn't understand your question, sorry...

 And we change our mind, and decide to release 0.9.1 instead of 0.10.0. So we create a 0.9.1 tag and push it. I guess this is going to create a new Release in GitHub, named 0.9.1. So I guess it will be a manual process to copy the content of the 0.10.0 draft release to the 0.9.1 release, and remove the 0.10.0.

Also, it is instructed to issue a minor release by default

I had missed that. I though it was patch/incremental by default. Thanks.

Let's say [...]

I know you had your answer since, but to have it written somewhere: no, it's GitHub who does the tag when we publish the release, so now it's all done at the same place.
I'll clarify this part in the contributing doc.


bug: not run

cordova.cmd platform add android --save
(node:12672) Warning: Accessing non-existent property 'android' of module exports inside circular dependency
(Use node --trace-warnings ... to show where the warning was created)
Error: npm: Command failed with exit code 1 Error output:
npm ERR! code ENOLOCAL
npm ERR! Could not install from "android" as it does not contain a package.json file.

npm ERR!      C:\Users\vits\AppData\Roaming\npm-cache_logs\2020-05-26T17_42_07_346Z-debug.log
at ChildProcess.whenDone (C:\Users\vits\AppData\Roaming\npm\node_modules\cordova\node_modules\cordova-common\src\superspawn.js:135:23)
at ChildProcess.emit (events.js:315:20)
at ChildProcess.cp.emit (C:\Users\vits\AppData\Roaming\npm\node_modules\cordova\node_modules\cross-spawn\lib\enoent.js:34:29)
at maybeClose (internal/child_process.js:1051:16)
at Process.ChildProcess._handle.onexit (internal/child_process.js:287:5) {
stderr: 'npm ERR! code ENOLOCAL\n' +
'npm ERR! Could not install from "android" as it does not contain a package.json file.\n' +
'\n' +
'npm ERR!      C:\Users\vits\AppData\Roaming\npm-cache\_logs\2020-05-26T17_42_07_346Z-debug.log\n',
code: 1
}

Bug Report
Ionic version:

[x] 4.x
Current behavior:

Expected behavior:

Steps to reproduce:

Related code:

insert short code snippets here

Other information:

Ionic info:

insert the output from ionic info here

Thanks for the issue. I am going to close this as this is not a bug in Ionic Framework. It looks like you had previously installed Capacitor before using Cordova instead. Please see this forum thread for a solution: https://forum.ionicframework.com/t/could-not-install-from-ios-as-it-does-not-contain-a-package-json-file/168462.


GORA-438 Erroneous Exception Message at IOUtils.java

Erroneous exception message: "cannot write to DataOutput of instance:" at readObject method of IOUtils.java should be fixed.

+1 on this if someone can merge to master
On Saturday, September 5, 2015, Furkan KAMACI<EMAIL_ADDRESS>wrote:

Erroneous exception message: "cannot write to DataOutput of instance:" at
readObject method of IOUtils.java should be fixed.
You can view, comment on, or merge this pull request online at:
https://github.com/apache/gora/pull/42
Commit Summary

Erroneous exception message: "cannot write to DataOutput of
instance:" at read method of IOUtils.java should be fixed.

File Changes

M gora-core/src/main/java/org/apache/gora/util/IOUtils.java
https://github.com/apache/gora/pull/42/files#diff-0 (2)

Patch Links:

https://github.com/apache/gora/pull/42.patch
https://github.com/apache/gora/pull/42.diff

—
Reply to this email directly or view it on GitHub
https://github.com/apache/gora/pull/42.

--
Lewis


Embed ICU data in the engine

This reduces the total app size by 10 MB. The original ICU data size is 11 MB (icudtl.dat) and it's 0.9 MB (icudtl.o) after object copy.
The icudtl_object action was copied from //shell/platform/android/BUILD.gn.

When I touch the icu data before (if not using only English...), it always cause a problem...  Do you know what icudtl_object action do? It's really interesting. (I'm just curious and ask. I don't think we have a reason to not. )

I'll set this as draft and do some more testing when the font resolution issue is resolved.

I found another workaround. I'll open a new PR.


websocket api example

could you give me an example for websocket using with viabtc

We actually have not figured out how to use them... Share please if you succeed.

Hello @ohld
Did you find out how to use websocket?
Thanks,
Best regards


Added Travis CI protractor support for testing web ui

Added support for Travis CI to run angular protractor e2e tests for the web ui as discussed in #7122

I tested on a fork of kubernetes with the v1beta3 api
https://travis-ci.org/bcbroussard/kubernetes-travis/jobs/63600512
Ready for review

cc @jackgr @lavalamp @bgrant0607

@jackgr Please review the UI changes.

Reassigning to @lavalamp to find another reviewer.

@ixdy, can you take this?

@ixdy I've updated with the changes we discussed. PTAL and I'll squash after review.

@ixdy, this is ready for review. I'll rebase and update the api to v1 if #9400 goes in first.

Sorry, I was OOO for much of last week, and then this fell off my radar. I'll take a look within the next day.

No problem @ixdy. I've rebased now that #9400 is in as well.

@ixdy do you have time to take a look this week, or is travis support being permanently removed?

I'm not sure what our long-term plans are for Travis at this point. Still reviewing this PR, since most of this will be used in Shippable as well, I assume.

@bcbroussard I can't assign this back to you, but please reassign this to me when you've addressed my comments.

... actually, you probably can't assign me, either. I'll assign myself again, but please ping after you've addressed my comments.

@ixdy Has the which build system to use debate been settled? I see that you are using Jenkins, Shippable, and Travis now.
There will need to be some updates now that 1.0 is out too. @preillyme can you take a look?

Currently we're only running the unit tests on Shippable because Travis was unable to keep up.
We'll probably start running them on Jenkins at some point too, though there will be obvious complications getting the web UI tests running there.
Maybe we should focus effort on #8659?

In that case, focusing on #8659 instead makes sense. You can close this one out.

Yup, Shippable is the place for this.


Different coverage results via yard command line and rake task

Context
I am trying to generate yard documentation with contract information.
When I use the command line it reports that my doc coverage is 100%.
When I use the yard rake task it reports that some lines with contracts have not been documented.
How to reproduce
On the command line I do:
bundle exec yardoc lib/**/*.rb spec/**/*.rb --plugin contracts --private --no-cache --no-stats --markup=markdown
In the rakefile I use:
YARD::Rake::YardocTask.new do |t|
  t.files   = ['lib/**/*.rb', 'spec/**/*.rb']
  t.options = ['--no-stats', '--markup=markdown', '--no-cache', '--plugin','contracts']
end
I am probably doing something wrong here. Anybody any idea what?

Hmm, I don't think I've done that before so I can't say off the top of my head.

Have you tried putting t.options before t.files?
I wonder if '--plugin', 'contracts' is right, try '--plugin contracts'or '--plugin=contracts'.

Please do report back if you get the Rake task to report correctly and I'll add whatever you did to the Readme :)

I will try to debug it to figure out what goes wrong. Might just as well be a yard problem. Or something I did wrong... nah ;)


DPL-099 As Scott after Lysate Plate Consolidation I need to split of the total volume of lysate in each well (50ul) into two equal 25ul fractions on different plates [ToR 12]

User story
After Lysate Plate Consolidation I need to split of the total volume of lysate in each well (50ul) into two equal 25ul fractions on different plates
It may be not needed and could have changes in future, so this story will need to validate if the volume is needed to be tracked and if it is going to change in future without us being noticed (in that case we may end up tracking wrong data).
Who are the primary contacts for this story
Scott / Steve
Acceptance criteria
To be considered successful the solution must allow:

[ ] Validate with users if this volume setting in the transfer may change in future and if is important to have this or not

Dependencies
This story is blocked by the following dependencies:

#<issue_no.>
sanger/#<issue_no.>

References
This story has a non-blocking relationship with:

#<issue_no.>
sanger/#<issue_no.>

Additional context
Add any other context or screenshots about the feature request here.

This permits the separate downstream processes that are required for DNA-seq and RNA-seq.

Combined.LCM.DNA-.RNA-seq.pdf

Google doc: https://docs.google.com/document/d/1s5AvMllBHZzMpx85simlCivBSmnfctJ5cwl_AXJFF5I/edit

As no CSV is required for this process, this is handled by configuration of the pipelines and the bravo robot.
If we don't track the cherrypick? plate, things are a little more complicated, as the consolidation step https://github.com/sanger/limber/issues/786 will need to spit out two children, not just one. (I can't remember if we do this elsewhere or not. I know it was discussed.)

Some considerations wrt mapping each plate to the correct request type:
https://github.com/sanger/sequencescape/issues/3282

See https://github.com/sanger/limber/issues/786 for discussion on the tracking of cherrypicked? plate. But in summary, it is probably easiest if the cherrypicked plate is untracked.

Closing, as is in Done column.


[Audio] Allow resampling for audio datasets in streaming mode

Many audio datasets like Common Voice always need to be resampled. This can very easily be done in non-streaming mode as follows:
from datasets import load_dataset

ds = load_dataset("common_voice", "ab", split="test")

ds = ds.cast_column("audio", Audio(sampling_rate=16_000))

However in streaming mode it fails currently:
from datasets import load_dataset

ds = load_dataset("common_voice", "ab", split="test", streaming=True)

ds = ds.cast_column("audio", Audio(sampling_rate=16_000))

with the following error:
AttributeError: 'IterableDataset' object has no attribute 'cast_column'

It would be great if we could add such a feature (I'm not 100% sure though how complex this would be)

This requires implementing cast_column for iterable datasets. It can also be useful to be able to disable the audio/image decoding for the dataset viewer cc @severo

Just to clarify a bit. This feature is always needed when using the common voice dataset in streaming mode. So I think it's quite important


Integration Test - Release - 2019/06/07 20:48:45

Auto create for integration test. AnotherAuthorUpdatedArticleFlow

@PRMergerTest3 : Thanks for your contribution! The author(s) have been notified to review your proposed change.


Suppress @polkadot/api console error messages

Hello,
I am integrating Polkadot into my application. I am using HttpProvider for the Api requests. I have an issue regarding displaying errors. For errors, the logger @polkadot/api uses will write to console even when the error is caught and handled. Is there a way to trap the messages?
Best regards, Dario

There is no "disable all logging" option.


Generating video other than mkv format?

Hi,
Is there a possibility that recorded video can be in standard web format like mpeg4?

I don't think muxing into an mp4 is possible because I don't think mp4 containers will accept opus/vp8.  But admittedly I have not tried recently.
What are you trying to accomplish?

@jnoring I want to play the recorded videos in browser.

We are recording VP8 + OPUS/PCM, the only container that supported this at the time was mkv.
You can post-process the recording with ffmpeg or avconv to get a mp4/webm file.

Just for the record, we have been using ffmpeg with several configurations
to encode original MKV into webm and mp4, but we have found better results
with Amazon Elastic Transcoder. However once a while we get some audio lost
that we haven't digging into it yet.
On Mon, Jun 15, 2015 at 5:33 AM, Pedro Rodriguez<EMAIL_ADDRESS>wrote:

We are recording VP8 + OPUS/PCM, the only container that supported this at
the time was mkv.
You can post-process the recording with ffmpeg or avconv to get a mp4/webm
file.
—
Reply to this email directly or view it on GitHub
https://github.com/ging/licode/issues/302#issuecomment-111978212.

--
Alvaro

This is not going to change for now. When a container suitable for the codecs browsers are using becomes available we will study it. For now, post-processing or playing video via Licode are the best options.


Filesystem

Needed for

tempestphp/tempest-framework#123
tempestphp/tempest-framework#201

Do we really need this before 1.0?

I think Tempest needs file upload management for 1.0. It's pretty tedious with vanilla PHP.
I guess local driver is required for that. Multiple disks support is bonus but should not be so tough once it's done.
Are you considering wrapping flysystem?

@shaffe-fr I'm thinking we should separate out local filesystem and third-party storage as two different packages in Tempest world, with priority on the former.

I like your idea to use Filesystem for framework level stuff and Storage for application level. 👌
We could start with Filesystem and Storage with local driver only. That would not require to hook on Flysystem.

I really like the difference between fs and storage as well 👍👍


#435 organizing documentation routes and folders

close #438
close #435
close #434

@vrwebdesign please review this PR


[Fix #2393] Style/MethodCallParentheses doesn't fail on obj.method ||= func()

Fixes #2393.

:+1:


use python3 cause of deprecating of python on ubuntu

@thuvh Thanks you for your contribution.
There is a nice guide on how to contribute to ceph and make a good commit description over there https://docs.ceph.com/en/latest/start/documenting-ceph/#commit-the-change
It would be great to get familiar with it and update the PR correspondingly.

@kshtsk I added prefix and sign off the commit, updated title of pr. Plz review it for me.


[BUG] Fill down Protocol REF column overwrites entries on the right-hand side

When using "Ontology search term" to fill selected cells in a Protocol REF column with an ontology, this overwrites the cells on the right with the ontology.
I guess technically this is not a bug, as this would normally fill the hidden column for other building blocks. Since the "Protocol REF" building block does currently not have these hidden columns, I was wondering, whether it might make sense to either add the columns here or alternatively (if possible) change the behavior to not add the ontology if a "Protocol REF" column is selected.
[SWATE [v0.6.2] in Excel Online]

I was wondering, whether it might make sense to either add the columns here or alternatively (if possible) change the behavior to not add the ontology if a "Protocol REF" column is selected.

Protocol REF should contain the name of the protocol, so it will not have reference columns, but it should check for the column type before adding the additional columns.

This will be handled correctly using ARCtrl, so i will close this until then 🙂


What‘s input of the model when training?

        FLAGS['path_data'] = '/dataset/LPGAN'
        FLAGS['path_result_root'] = '/dataset/LPGAN-Result/%03d-DGX-LPGAN'

What does LPGAN point to? How to modify it according to self environment?
Are there any other places that we should modify to make the code running?

@nothinglo please, help to understand how can we actually use it? The code is mostly understandable, but I really can't deal with the part related to input(image reading, etc.)

I am guessing this path too, maybe it's FiveK dataset path. Am I right? @nothinglo

Yes. it points to the datasets.

Hi nothinglo,
Thanks for your great work.  I have some questions for the code data part also.
Do I have to use both the input and the corresponding retouched label?
Why is that in the code , the training sets contains input+label + input_label three parts.
`
input_img = cv2.imread(FLAGS['folder_input'] + file_name_input + FLAGS['data_input_ext'], -1)
        if os.path.exists(FLAGS['folder_label'] + file_name_label + FLAGS['data_input_ext']):
            label_img = cv2.imread(FLAGS['folder_label'] + file_name_label + FLAGS['data_input_ext'], -1)
        else:
            label_img = cv2.imread(FLAGS['folder_label_HDR'] + file_name_label + FLAGS['data_input_ext'], -1)
         input_label_img = cv2.imread(FLAGS['folder_label'] + file_name_input + FLAGS['data_input_ext'], -1)
        label_input_img = cv2.imread(FLAGS['folder_input'] + file_name_label + FLAGS['data_input_ext'], -1)

`
What if I dont have the corresponding pairs? (Also in the do_testing function I have to provide input and label)
Thank you !
Looking forward to your reply.

If you do not have input_label then you can just modify the code. Sorry for your inconvenience.

Thank you nothinglo! I've already modified the code. Excellent work !

Hi nothinglo,
Thanks for your great work. I have some questions for the code data part also.
Do I have to use both the input and the corresponding retouched label?
Why is that in the code , the training sets contains input+label + input_label three parts.
`
input_img = cv2.imread(FLAGS['folder_input'] + file_name_input + FLAGS['data_input_ext'], -1)
        if os.path.exists(FLAGS['folder_label'] + file_name_label + FLAGS['data_input_ext']):
            label_img = cv2.imread(FLAGS['folder_label'] + file_name_label + FLAGS['data_input_ext'], -1)
        else:
            label_img = cv2.imread(FLAGS['folder_label_HDR'] + file_name_label + FLAGS['data_input_ext'], -1)
         input_label_img = cv2.imread(FLAGS['folder_label'] + file_name_input + FLAGS['data_input_ext'], -1)
        label_input_img = cv2.imread(FLAGS['folder_input'] + file_name_label + FLAGS['data_input_ext'], -1)

`
What if I dont have the corresponding pairs? (Also in the do_testing function I have to provide input and label)
Thank you !
Looking forward to your reply.

Hi, I'm trying unsupervised code now, as you said, I use input_img and label_img only, but have troubles in # 2th netG.
Can you give me some advise when modifying the code? Thanks a lot!

Hi nothinglo,
Thanks for your great work. I have some questions for the code data part also.
Do I have to use both the input and the corresponding retouched label?
Why is that in the code , the training sets contains input+label + input_label three parts.
`
input_img = cv2.imread(FLAGS['folder_input'] + file_name_input + FLAGS['data_input_ext'], -1)
        if os.path.exists(FLAGS['folder_label'] + file_name_label + FLAGS['data_input_ext']):
            label_img = cv2.imread(FLAGS['folder_label'] + file_name_label + FLAGS['data_input_ext'], -1)
        else:
            label_img = cv2.imread(FLAGS['folder_label_HDR'] + file_name_label + FLAGS['data_input_ext'], -1)
         input_label_img = cv2.imread(FLAGS['folder_label'] + file_name_input + FLAGS['data_input_ext'], -1)
        label_input_img = cv2.imread(FLAGS['folder_input'] + file_name_label + FLAGS['data_input_ext'], -1)

`
What if I dont have the corresponding pairs? (Also in the do_testing function I have to provide input and label)
Thank you !
Looking forward to your reply.

Hi, @XBOOS  I'm trying unsupervised code now, as you said, I use input_img and label_img only, but have troubles in # 2th netG.
Can you give me some advise when modifying the code? Thanks a lot!

When train HDR models, "input_img" means source img, "label_img" means target img,  what role did "input_label_img" play?
When train UL(unpaired learning) models, "input_img" means source img, "label_img" means target img,
"input_label_img" is same as "label_img" in your code,   what role did "input_label_img" play in this case?
@nothinglo  @XBOOS

I used the inputZeroed as input. @xiaozhi2015

Thank you nothinglo! I've already modified the code. Excellent work !
Hi @XBOOS ,

Can you please share the modified code ? I am struggling to get the exact overview.
Thanks.


Add bar chart plotting and creating traces from data

I've been looking for an easy way to draw bar charts in Grafana. Since Plotly can do bar charts, I figured adding bar charts to the chart types supported by your rather handy plugin might be good way ahead.
In the process I also ran into a requirement for bar charts where the number of traces depended on the data (e.g. charting the number of each different type of QTYPE in a set of DNS data). So I've also added what I've called 'autotrace' mode. For this, the input data must be 3  columns, respectively trace name, X, Y. A trace is created for each distinct trace name.

This looks good -- I will try to give it some attention this week

Tried it out, looks great. Will it be pulled into the master?

Hi! Any update on this PR, I'd be awesome to have it.

Hi! Any chance of this getting implemented any time soon? Just started using Plotly and really miss having this feature to create bar charts with table data.

Tried to package this PR by following https://github.com/NatelEnergy/grafana-plotly-panel#building and https://github.com/NatelEnergy/grafana-plotly-panel#releasing on my fork.
I would like to check the panel on my local Grafana test setup, but I failed. Package can be found on https://github.com/matawed/grafana-plotly-panel/releases/tag/v0.0.13
Registering the plugin works in Grafana, but if I like to create a new Plotly panel, then Grafana reports
"Dashboard init failed
t.onAppEvent is not a function`
Anybody with the same issue?

The plugin is broken in newer versions of Grafana. I think @ryantxu has dropped support for it pretty much. Maybe, transferring maintainership of the plugin to someone else might be a good idea so that the plugin can be modernized (dataframes, compatibility, new features, etc.)


Show message for unsupported browsers

Currently there is no message for not supported browsers. The client only gets a JavaScript error. Showing a message like "Your browser isn't supported upgrade to a newer version of ..." would be nice.

Yeah, let's Unsuck the web :smile:

@danrot something we will add for 2.0?

Yeah, we can do that, should also not be too hard to implement


Integrate PR for bold fonts?

Hello,
I was testing out gonvim, it looks really great and fast! 👍  One thing I was missing was the support for bold fonts.
It seems like this pull request on dzhou121/gonvim is aimed to fix that.
Do you think it would be possible to somehow integrate this into your branch?
EDIT: the original title was bold and italic fonts, sorry for the false alert, of course italic fonts are supported by Gonvim!

gonvim supports bold fonts.
The pull request has already been merged.

Ah sorry about this then! ☺
I'll check with another font then! In fact compared to what I see in iTerm-nvim, the fonts in the Gonvim look bolder, ie the code seems to be displayed in bold and bold-italic.

Hello,
I've found why texts looked bold in Gonvim compared to iTerm: the Use font smoothing when available option was turned of in the system preferences :

If I turn this off, fonts will be displayed in their original (lighter) weights.
But this shows that Gonvim displays all texts at the same, normal weight:

Is there maybe a setting that I forgot that would enable Gonvim use bolds fonts?
Do you think it would be better to raise this issue on the original pull request?
I really love the mix of normal, bold, italic text for displaying code, it makes the syntax more readable.

Hi,
I think it is okay to discuss this font probrem with this issue.
What is your font-family and colorscheme?
Gonvim displays bold-font if bold is enabled in colorscheme.
I confirmed the Use font smoothing when available, but the bold font was valid for either setting.
Here is my screenshot. it is "FantasqueSansMono Nerd Font Mono" and vim-github-colorscheme

Thanks, that's definitely good news then! I will try with your setup then.
What lead me to think that bold fonts were broken was the fact that other Neovim GUIs (VV) and iTerm were showing the bold fonts with the same font and same scheme. I'm using the Hack font with the inkstained colors, but also tried with Gruvbox.
By the way, I really love how Gonvim adapts to the active colorscheme! I haven't seen this with the original Gonvim repo. It's really very nicely done!

I tried your setup, but unfortunately sill cannot get the bold fonts displayed. I downloaded FantasqueSansMono-normal.zip and the GitHub theme.
My ginit.vim file has this:
GuiFont Fantasque Sans Mono:h13
GuiLinespace 7

And .gonvim this:
...
fontFamily = "Fantasque Sans Mono"
fontsize = 13
linespace = 7
# Editor cursor blink
cursorBlink = false
# Disable IME in Normal mode
disableIMEinNormal = true
...

Could it be that I'm still missing some setting somewhere? (I'm using the latest version of Gonvim available from the releases page)

I also tried with just a minimal init.vim like so, bit did not solve it either unfortunately:
set nocompatible
set nonumber
set ignorecase
set smartcase
set expandtab
set inccommand=nosplit
filetype plugin on

set hidden
set cmdheight=1
set noshowmode

call plug#begin('~/config/.nvim/plugged')
  Plug 'endel/vim-github-colorscheme'
  Plug 'equalsraf/neovim-gui-shim'
  Plug 'akiyosi/gonvim-fuzzy'
call plug#end()

set background=light
set termguicolors
colorscheme github

Yes, I'm on Mojave, and unfortunately did not test bold fonts with Gonvim on High Sierra before upgrading!
So I guess the best is to wait until the Qt dependency used by Gonvim is updated? Of course it's not mission critical for me, just something that would be nice to have eventually.

There is no other idea of the bold font probrem, so I think we have to wait for Qt 5.12.
But it was released soon;
https://wiki.qt.io/Qt_5.12_Release
If therecipe/qt supports Qt 5.12 then gonvim will also follow.

That's great, thanks for the heads-up! Let's wait for the Qt update then, it really looks like it will solve it.

Hello,
Just wanted to report that last week I was trying out the Iosevka font family with Gonvim and with this font the font weights are displayed correctly (but not italic...)! I don't really understand why Iosevka has better compatibility but anyway it's a great  looking font so don't mind sticking with it.

Hello,
I can confirm that the latest release for MacOS displays correctly all font weights!
Thanks for providing this release, it works great on my machine! I close this issue as it seems to be resolved now.