VSCode and VSCode insiders slow to initialise notebook cells and slow to run them.

Applies To

[X] Notebooks (.ipynb files)
[ ] Interactive Window and/or Cell Scripts (.py files with #%% markers)

What happened?
I realise this issue has been brought up multiple times in the past month or so. I am creating a new issue to give as much logs and details as possible. The issue is the same for both VSCode and VSCode Insiders. I will refer to a "cell initialising" as the period between clicking play and seeing the cell actually run. During this period, the little symbol shows "pending".
The issue
A notebook cell is very slow to initialise. After that, it is very slow to run as well. Sometimes a cell containing a single print statement takes up to a minute to run after one to two minutes of initialisation. Once a cell is initialised and it has run once, running it immediately after has a better chance of normal behaviour and running in under 0.2s, but this is not always the case. Going back to cells that have been run very recently often initialises and runs quickly (again, under 0.2s). Creating a new cell and running something like print("test") is a sure way to reproduce the same behaviour.
I am running the Jupyter server on a remote cluster, and using the SSH extension of VSCode to connect to this cluster.
I can access the same jupyter notebooks with firefox, and there it performs a lot quicker. A cell starts running immediately and takes under 0.2s to run the same print("test") statement. This leads me to believe the issue is not due to the Jupyter server itself, nor the ssh connection to the cluster being the big limiting factor. I think it must be either due to VSCode or the Jupyter extension on VSCode?
Below, I'm providing some logs where I cleared everything before running a slow cell, so you're sure to get a log of only the period where this behaviour is happening.
Logs
The most active log during this behaviour seems to be the output of Window:

Output of Window
2022-11-10 17:16:05.770 [info] [remote-connection][ExtensionHost][f7d0b…][reconnect] received socket timeout event (unacknowledgedMsgCount: 33, timeSinceOldestUnacknowledgedMsg: 20141, timeSinceLastReceivedSomeData: 20015).
2022-11-10 17:16:05.770 [info] [remote-connection][ExtensionHost][f7d0b…][reconnect] starting reconnecting loop. You can get more information with the trace log level.
2022-11-10 17:16:05.771 [info] [remote-connection][ExtensionHost][f7d0b…][reconnect] resolving connection...
2022-11-10 17:16:05.772 [info] [remote-connection][ExtensionHost][f7d0b…][reconnect] connecting to <IP_ADDRESS>:49602...
2022-11-10 17:16:05.808 [info] [remote-connection][ExtensionHost][f7d0b…][reconnect] reconnected!
2022-11-10 17:16:23.050 [error] Request textDocument/semanticTokens/range failed with message: Cannot read properties of undefined (reading 'startOffset'): Error: Request textDocument/semanticTokens/range failed with message: Cannot read properties of undefined (reading 'startOffset')
	at /gpfs/soma_fs/home/meulemeester/.vscode-server-insiders/extensions/ms-toolsai.jupyter-2022.9.1202862440/out/extension.node.js:2:1329584
	at /gpfs/soma_fs/home/meulemeester/.vscode-server-insiders/extensions/ms-toolsai.jupyter-2022.9.1202862440/out/extension.node.js:2:1329878
	at Immediate.<anonymous> (/gpfs/soma_fs/home/meulemeester/.vscode-server-insiders/extensions/ms-toolsai.jupyter-2022.9.1202862440/out/extension.node.js:2:1330240)
	at processImmediate (node:internal/timers:466:21)
2022-11-10 17:16:30.673 [error] Request textDocument/semanticTokens/full failed with message: Cannot read properties of undefined (reading 'startOffset'): Error: Request textDocument/semanticTokens/full failed with message: Cannot read properties of undefined (reading 'startOffset')
	at /gpfs/soma_fs/home/meulemeester/.vscode-server-insiders/extensions/ms-toolsai.jupyter-2022.9.1202862440/out/extension.node.js:2:1329584
	at /gpfs/soma_fs/home/meulemeester/.vscode-server-insiders/extensions/ms-toolsai.jupyter-2022.9.1202862440/out/extension.node.js:2:1329878
	at Immediate.<anonymous> (/gpfs/soma_fs/home/meulemeester/.vscode-server-insiders/extensions/ms-toolsai.jupyter-2022.9.1202862440/out/extension.node.js:2:1330240)
	at processImmediate (node:internal/timers:466:21)
2022-11-10 17:16:52.426 [info] [remote-connection][ExtensionHost][f7d0b…][reconnect] received socket timeout event (unacknowledgedMsgCount: 60, timeSinceOldestUnacknowledgedMsg: 20694, timeSinceLastReceivedSomeData: 20498).
2022-11-10 17:16:52.427 [info] [remote-connection][ExtensionHost][f7d0b…][reconnect] starting reconnecting loop. You can get more information with the trace log level.
2022-11-10 17:16:52.427 [info] [remote-connection][ExtensionHost][f7d0b…][reconnect] resolving connection...
2022-11-10 17:16:52.427 [info] [remote-connection][ExtensionHost][f7d0b…][reconnect] connecting to <IP_ADDRESS>:49602...
2022-11-10 17:16:52.459 [info] [remote-connection][ExtensionHost][f7d0b…][reconnect] reconnected!
2022-11-10 17:17:09.545 [error] Request textDocument/semanticTokens/range failed with message: Cannot read properties of undefined (reading 'startOffset'): Error: Request textDocument/semanticTokens/range failed with message: Cannot read properties of undefined (reading 'startOffset')
	at /gpfs/soma_fs/home/meulemeester/.vscode-server-insiders/extensions/ms-toolsai.jupyter-2022.9.1202862440/out/extension.node.js:2:1329584
	at /gpfs/soma_fs/home/meulemeester/.vscode-server-insiders/extensions/ms-toolsai.jupyter-2022.9.1202862440/out/extension.node.js:2:1329878
	at Immediate.<anonymous> (/gpfs/soma_fs/home/meulemeester/.vscode-server-insiders/extensions/ms-toolsai.jupyter-2022.9.1202862440/out/extension.node.js:2:1330240)
	at processImmediate (node:internal/timers:466:21)

Another very interesting log reporting errors during this odd behaviour is the output of Remote Extension Host. note that this log, spanning over about 2 minutes was taken after I created a single new cell with the code print("test") and ran it. Initialising the cell took over a minute. Running it took 6.2s:

Output of Remote Extension Host
2022-11-10 17:20:50.665 [error] Error: Cannot call write after a stream was destroyed
	at new NodeError (node:internal/errors:371:5)
	at errorBuffer (node:internal/streams/writable:517:14)
	at afterWrite (node:internal/streams/writable:501:5)
	at onwrite (node:internal/streams/writable:477:7)
	at WriteWrap.onWriteComplete [as oncomplete] (node:internal/stream_base_commons:87:12)
2022-11-10 17:21:30.819 [error] Error: Cannot call write after a stream was destroyed
	at new NodeError (node:internal/errors:371:5)
	at errorBuffer (node:internal/streams/writable:517:14)
	at afterWrite (node:internal/streams/writable:501:5)
	at onwrite (node:internal/streams/writable:477:7)
	at WriteWrap.onWriteComplete [as oncomplete] (node:internal/stream_base_commons:87:12)

The output of Remote Server shows that the client reconnects about every minute. I don't know if this is normal behaviour or not.

Output of Remote Server
2022-11-10 17:16:05.699 [info] [<IP_ADDRESS>][f7d0b6dd][ExtensionHostConnection] The client has reconnected.
2022-11-10 17:16:52.356 [info] [<IP_ADDRESS>][f7d0b6dd][ExtensionHostConnection] The client has reconnected.
2022-11-10 17:20:01.285 [info] [<IP_ADDRESS>][f7d0b6dd][ExtensionHostConnection] The client has reconnected.
2022-11-10 17:20:39.101 [info] [<IP_ADDRESS>][f7d0b6dd][ExtensionHostConnection] The client has reconnected.
2022-11-10 17:21:18.254 [info] [<IP_ADDRESS>][f7d0b6dd][ExtensionHostConnection] The client has reconnected.
2022-11-10 17:21:58.409 [info] [<IP_ADDRESS>][f7d0b6dd][ExtensionHostConnection] The client has reconnected.
2022-11-10 17:22:36.041 [info] [<IP_ADDRESS>][f7d0b6dd][ExtensionHostConnection] The client has reconnected.
2022-11-10 17:23:44.848 [info] [<IP_ADDRESS>][f7d0b6dd][ExtensionHostConnection] The client has reconnected.
2022-11-10 17:24:23.650 [info] [<IP_ADDRESS>][f7d0b6dd][ExtensionHostConnection] The client has reconnected.

VSCode version
Version: 1.73.0 (user setup)
Commit: 8fa188b2b301d36553cbc9ce1b0a146ccb93351f
Date: 2022-11-01T15:34:06.111Z
Electron: 19.0.17
Chromium: 102.0.5005.167
Node.js: 16.14.2
V8: <IP_ADDRESS>-electron.0
OS: Windows_NT x64 10.0.19044
Sandboxed: No

VSCode Insiders Version
Version: 1.74.0-insider (user setup)
Commit: 9d5741f01a67beea273121615b2d015fc298d9ea
Date: 2022-11-10T05:21:13.252Z
Electron: 19.1.3
Chromium: 102.0.5005.167
Node.js: 16.14.2
V8: <IP_ADDRESS>-electron.0
OS: Windows_NT x64 10.0.19044
Sandboxed: Yes

The output of Jupyter is silent during this behaviour.
VS Code Version
Version: 1.74.0-insider (user setup) Commit: 9d5741f01a67beea273121615b2d015fc298d9ea Date: 2022-11-10T05:21:13.252Z Electron: 19.1.3 Chromium: 102.0.5005.167 Node.js: 16.14.2 V8: <IP_ADDRESS>-electron.0 OS: Windows_NT x64 10.0.19044 Sandboxed: Yes
Jupyter Extension Version
v2022.11.1003161031
Jupyter logs
No response
Coding Language and Runtime Version
Python 3.8.5
Language Extension Version (if applicable)
v2022.18.2
Anaconda Version (if applicable)
conda version : 4.12.0
Running Jupyter locally or remotely?
Remote

Thanks for the details. Could you set "jupyter.logging.level": "verbose", try again, and see whether you get any logs at all in the Jupyter channel? This really must be due to the Jupyter extension doing some extra work, but I have no idea what that would be.

I adapted the logging level of the Jupyter extension in VSCode. Below is the output when set to verbose. I ran a couple of print statements in a newly created notebook called test.ipynb and they all ran in under a second, with no obvious delay to start running. Then, I opened a larger notebook (called plots_like_in_thesis, about 60MB) and ran a cell there (after the timestamp of 14:31:20:527). That one was slow to initialise, but quick to run. I ran a second cell in the larger notebook (timestamp 14:31:56:741) and that one was slow to initialise and relatively slow to run, but not too extreme (runtime of 5.7 seconds for two import statements).
I closed the larger notebook, re-opened it so it had to be loaded in memory again. During that time, I went back to my test notebook with just some print statements. The first cell again ran quickly (.8s and no initialisation time), but clicking play on a second cell (after timestamp 14:36:29:904), the simple print("hi") took about half a minute to start running, and 29.5s to actually run.
I tried the same thing again after setting the output to "everything" in case it could be of value. Closed the larger notebook, re-opening it so it has to be reloaded, and running a simple cell in test.ipynb in the meantime (after timestamp 14:40:47.835). Lo and behold, a single cell with print("hi") again took half a minute to initialise and another 29.8s to run.
Interestingly enough, the output is completely silent during the half minute initialisation.

 Verbose output of Jupyter
debug 14:30:55.721: notebook communications already initialized for editor /gpfs/soma_fs/scratch/meulemeester/notebooks/test.ipynb
debug 14:31:00.674: VSCodeNotebookController::handleExecution, Class name = x (started execution)
debug 14:31:00.674: Execute Cell 0 /gpfs/soma_fs/scratch/meulemeester/notebooks/test.ipynb
debug 14:31:00.675: start the kernel, options.disableUI=false for /gpfs/soma_fs/scratch/meulemeester/notebooks/test.ipynb
debug 14:31:00.676: Start Jupyter Session in kernel.ts with disableUI = false
debug 14:31:00.752: Cell 0 executed with state Success
debug 14:31:00.752: VSCodeNotebookController::handleExecution, Class name = x, completed in 78ms, has a falsy return value
debug 14:31:03.047: VSCodeNotebookController::handleExecution, Class name = x (started execution)
debug 14:31:03.048: Execute Cell 1 /gpfs/soma_fs/scratch/meulemeester/notebooks/test.ipynb
debug 14:31:03.048: start the kernel, options.disableUI=false for /gpfs/soma_fs/scratch/meulemeester/notebooks/test.ipynb
debug 14:31:03.048: Start Jupyter Session in kernel.ts with disableUI = false
debug 14:31:03.079: Cell 1 executed with state Success
debug 14:31:03.079: VSCodeNotebookController::handleExecution, Class name = x, completed in 32ms, has a falsy return value
debug 14:31:05.005: VSCodeNotebookController::handleExecution, Class name = x (started execution)
debug 14:31:05.005: Execute Cell 0 /gpfs/soma_fs/scratch/meulemeester/notebooks/test.ipynb
debug 14:31:05.006: start the kernel, options.disableUI=false for /gpfs/soma_fs/scratch/meulemeester/notebooks/test.ipynb
debug 14:31:05.006: Start Jupyter Session in kernel.ts with disableUI = false
debug 14:31:05.035: Cell 0 executed with state Success
debug 14:31:05.035: VSCodeNotebookController::handleExecution, Class name = x, completed in 30ms, has a falsy return value
debug 14:31:06.739: VSCodeNotebookController::handleExecution, Class name = x (started execution)
debug 14:31:06.739: Execute Cell 1 /gpfs/soma_fs/scratch/meulemeester/notebooks/test.ipynb
debug 14:31:06.739: start the kernel, options.disableUI=false for /gpfs/soma_fs/scratch/meulemeester/notebooks/test.ipynb
debug 14:31:06.740: Start Jupyter Session in kernel.ts with disableUI = false
debug 14:31:06.770: Cell 1 executed with state Success
debug 14:31:06.770: VSCodeNotebookController::handleExecution, Class name = x, completed in 31ms, has a falsy return value
debug 14:31:09.022: Jupyter completion time: 7
debug 14:31:09.985: Jupyter completion time: 12
debug 14:31:11.010: VSCodeNotebookController::handleExecution, Class name = x (started execution)
debug 14:31:11.011: Execute Cell 2 /gpfs/soma_fs/scratch/meulemeester/notebooks/test.ipynb
debug 14:31:11.011: start the kernel, options.disableUI=false for /gpfs/soma_fs/scratch/meulemeester/notebooks/test.ipynb
debug 14:31:11.012: Start Jupyter Session in kernel.ts with disableUI = false
debug 14:31:11.102: Cell 2 executed with state Success
debug 14:31:11.102: VSCodeNotebookController::handleExecution, Class name = x, completed in 92ms, has a falsy return value
debug 14:31:12.972: VSCodeNotebookController::handleExecution, Class name = x (started execution)
debug 14:31:12.972: Execute Cell 1 /gpfs/soma_fs/scratch/meulemeester/notebooks/test.ipynb
debug 14:31:12.972: start the kernel, options.disableUI=false for /gpfs/soma_fs/scratch/meulemeester/notebooks/test.ipynb
debug 14:31:12.972: Start Jupyter Session in kernel.ts with disableUI = false
debug 14:31:13.005: Cell 1 executed with state Success
debug 14:31:13.005: VSCodeNotebookController::handleExecution, Class name = x, completed in 33ms, has a falsy return value
debug 14:31:13.837: VSCodeNotebookController::handleExecution, Class name = x (started execution)
debug 14:31:13.837: Execute Cell 0 /gpfs/soma_fs/scratch/meulemeester/notebooks/test.ipynb
debug 14:31:13.837: start the kernel, options.disableUI=false for /gpfs/soma_fs/scratch/meulemeester/notebooks/test.ipynb
debug 14:31:13.837: Start Jupyter Session in kernel.ts with disableUI = false
debug 14:31:13.871: Cell 0 executed with state Success
debug 14:31:13.871: VSCodeNotebookController::handleExecution, Class name = x, completed in 34ms, has a falsy return value
debug 14:31:15.291: No controller, hence notebook communications cannot be initialized for editor /gpfs/soma_fs/scratch/meulemeester/notebooks/plots_like_in_thesis.ipynb
debug 14:31:17.368: notebook communications already initialized for editor /gpfs/soma_fs/scratch/meulemeester/notebooks/test.ipynb
debug 14:31:18.103: VSCodeNotebookController::handleExecution, Class name = x (started execution)
debug 14:31:18.104: Execute Cell 0 /gpfs/soma_fs/scratch/meulemeester/notebooks/test.ipynb
debug 14:31:18.104: start the kernel, options.disableUI=false for /gpfs/soma_fs/scratch/meulemeester/notebooks/test.ipynb
debug 14:31:18.104: Start Jupyter Session in kernel.ts with disableUI = false
debug 14:31:18.142: Cell 0 executed with state Success
debug 14:31:18.142: VSCodeNotebookController::handleExecution, Class name = x, completed in 39ms, has a falsy return value
debug 14:31:20.069: No controller, hence notebook communications cannot be initialized for editor /gpfs/soma_fs/scratch/meulemeester/notebooks/plots_like_in_thesis.ipynb
debug 14:31:20.172: KernelProvider switched kernel to id = c8e6fca0a9a23fe9ef20fe89b8d4c8e6f18b6521cc31280c66adf1f6ab5feb86..python3./gpfs/soma_fs/scratch/meulemeester/anaconda_isf3/python./.-m#ipykernel_launcher
debug 14:31:20.173: Initialize notebook communications for editor /gpfs/soma_fs/scratch/meulemeester/notebooks/plots_like_in_thesis.ipynb
debug 14:31:20.173: Resolving notebook UI Comms (resolve) for /gpfs/soma_fs/scratch/meulemeester/notebooks/plots_like_in_thesis.ipynb
debug 14:31:20.173: initialize CommonMessageCoordinator
debug 14:31:20.174: Registering commtarget jupyter.widget
debug 14:31:20.174: IPyWidgetMessageDispatcher.initialize
debug 14:31:20.174: Initialize notebook communications for editor /gpfs/soma_fs/scratch/meulemeester/notebooks/plots_like_in_thesis.ipynb
debug 14:31:20.174: Resolving notebook UI Comms (resolve) for /gpfs/soma_fs/scratch/meulemeester/notebooks/plots_like_in_thesis.ipynb
debug 14:31:20.174: initialize CommonMessageCoordinator
debug 14:31:20.175: IPyWidgetMessageDispatcher.initialize
debug 14:31:20.175: Initialize notebook communications for editor /gpfs/soma_fs/scratch/meulemeester/notebooks/plots_like_in_thesis.ipynb
debug 14:31:20.175: Resolving notebook UI Comms (resolve) for /gpfs/soma_fs/scratch/meulemeester/notebooks/plots_like_in_thesis.ipynb
debug 14:31:20.175: initialize CommonMessageCoordinator
debug 14:31:20.175: IPyWidgetMessageDispatcher.initialize
debug 14:31:20.175: Controller selection change completed
debug 14:31:20.177: _jupyterPythonPathFunction: Couldn't find interpreter for "file:///gpfs/soma_fs/scratch/meulemeester/notebooks/plots_like_in_thesis.ipynb"
debug 14:31:20.527: IPyWidgetMessageDispatcher.initialize
debug 14:31:55.217: VSCodeNotebookController::handleExecution, Class name = x (started execution)
debug 14:31:55.232: Execute Cell 0 /gpfs/soma_fs/scratch/meulemeester/notebooks/plots_like_in_thesis.ipynb
debug 14:31:55.232: start the kernel, options.disableUI=false for /gpfs/soma_fs/scratch/meulemeester/notebooks/plots_like_in_thesis.ipynb
debug 14:31:55.233: Start Jupyter Session in kernel.ts with disableUI = false
info 14:31:55.234: Starting Jupyter Session startUsingRemoteKernelSpec, c8e6fca0a9a23fe9ef20fe89b8d4c8e6f18b6521cc31280c66adf1f6ab5feb86..python3./gpfs/soma_fs/scratch/meulemeester/anaconda_isf3/python./.-m#ipykernel_launcher for '/gpfs/soma_fs/scratch/meulemeester/notebooks/plots_like_in_thesis.ipynb' (disableUI=false)
debug 14:31:55.248: createNewKernelSession c8e6fca0a9a23fe9ef20fe89b8d4c8e6f18b6521cc31280c66adf1f6ab5feb86..python3./gpfs/soma_fs/scratch/meulemeester/anaconda_isf3/python./.-m#ipykernel_launcher
http://<IP_ADDRESS>:11113/: Kernel started: 545dcc35-a0b9-4fd7-bd57-7f67dca7ae4a
debug 14:31:55.294: Waiting for 60000ms idle on (kernel): 545dcc35-a0b9-4fd7-bd57-7f67dca7ae4a -> unknown
debug 14:31:55.852: Got status busy in waitForIdleOnSession
debug 14:31:55.891: Got status idle in waitForIdleOnSession
debug 14:31:55.891: Finished waiting for idle on (kernel): 545dcc35-a0b9-4fd7-bd57-7f67dca7ae4a -> idle
info 14:31:55.892: Started session for kernel startUsingRemoteKernelSpec:c8e6fca0a9a23fe9ef20fe89b8d4c8e6f18b6521cc31280c66adf1f6ab5feb86..python3./gpfs/soma_fs/scratch/meulemeester/anaconda_isf3/python./.-m#ipykernel_launcher
http://<IP_ADDRESS>:11113/: Creating new notebook
debug 14:31:55.892: Started running kernel initialization for /gpfs/soma_fs/scratch/meulemeester/notebooks/plots_like_in_thesis.ipynb
debug 14:31:55.893: Executing silently Code (idle) = import os as __VSCODE_os\n__VSCODE_os.environ["PYDEVD_IPYTHON_COMPATIBLE_DEBUGGING"] = "1"\ndel __VSCO
debug 14:31:55.942: Executing silently Code (completed) = import os as __VSCODE_os\n__VSCODE_os.environ["PYDEVD_IPYTHON_COMPATIBLE_DEBUGGING"] = "1"\ndel __VSCO with 0 output(s)
debug 14:31:55.942: Not executing startup session: Object, code:
debug 14:31:55.942: Requesting Kernel info
debug 14:31:55.942: Got Kernel info
debug 14:31:55.942: End running kernel initialization, now waiting for idle
debug 14:31:55.943: Waiting for 60000ms idle on (kernel): 545dcc35-a0b9-4fd7-bd57-7f67dca7ae4a -> idle
debug 14:31:55.943: Finished waiting for idle on (kernel): 545dcc35-a0b9-4fd7-bd57-7f67dca7ae4a -> idle
debug 14:31:55.943: End running kernel initialization, session is idle
info 14:31:55.944: Updating preferred kernel for remote notebook 545dcc35-a0b9-4fd7-bd57-7f67dca7ae4a
debug 14:31:55.945: IPyWidgetMessageDispatcher.initialize
debug 14:31:55.946: IPyWidgetScriptSource.initialize
debug 14:31:55.947: Storing Preferred remote kernel for /gpfs/soma_fs/scratch/meulemeester/notebooks/plots_like_in_thesis.ipynb is 545dcc35-a0b9-4fd7-bd57-7f67dca7ae4a
info 14:31:55.947: Creating server with url : http://<IP_ADDRESS>:11113/
debug 14:31:55.952: Start Jupyter Session in kernel.ts with disableUI = false
debug 14:31:55.956: Executing silently Code (idle) = # Copyright (c) Microsoft Corporation. All rights reserved.\n# Licensed under the MIT License.\n# Sou
debug 14:31:55.966: Disposing session manager
debug 14:31:55.966: SessionManager - dispose contents manager
debug 14:31:55.966: ShutdownSessionAndConnection - dispose session manager
debug 14:31:55.967: Finished disposing jupyter session manager
debug 14:31:55.967: UniversalRemoteKernelFinder: Writing 5 remote kernel connection metadata to cache
debug 14:31:56.008: Widget Message: Received IPyWidgets_kernelOptions in ScriptManager
debug 14:31:56.015: Widget Message: Received IPyWidgetMessages.IPyWidgets_kernelOptions
debug 14:31:56.020: _jupyterPythonPathFunction: Couldn't find interpreter for "file:///gpfs/soma_fs/scratch/meulemeester/notebooks/plots_like_in_thesis.ipynb"
debug 14:31:56.027: IPyWidgetMessageDispatcher.initialize
debug 14:31:56.028: Found 13 cached controllers
debug 14:31:56.028: Creating 13 controllers
debug 14:31:56.028: Creating notebook controller for connectToLiveRemoteKernel (id=545dcc35-a0b9-4fd7-bd57-7f67dca7ae4a) with name 'Python 3 (plots_like_in_thesis.ipynb)'
debug 14:31:56.028: Creating notebook controller for connectToLiveRemoteKernel (id=545dcc35-a0b9-4fd7-bd57-7f67dca7ae4a) with name 'Python 3 (plots_like_in_thesis.ipynb)'
debug 14:31:56.032: IPyWidgetMessageDispatcher.initialize
debug 14:31:56.032: Widget Message: data-base-url set to http://<IP_ADDRESS>:11113/
debug 14:31:56.411: Executing silently Code (completed) = # Copyright (c) Microsoft Corporation. All rights reserved.\n# Licensed under the MIT License.\n# Sou with 1 output(s)
debug 14:31:56.741: Cell 0 executed with state Success
debug 14:31:56.741: VSCodeNotebookController::handleExecution, Class name = x, completed in 1524ms, has a falsy return value
debug 14:32:31.164: VSCodeNotebookController::handleExecution, Class name = x (started execution)
debug 14:32:31.168: Execute Cell 1 /gpfs/soma_fs/scratch/meulemeester/notebooks/plots_like_in_thesis.ipynb
debug 14:32:31.168: start the kernel, options.disableUI=false for /gpfs/soma_fs/scratch/meulemeester/notebooks/plots_like_in_thesis.ipynb
debug 14:32:31.169: Start Jupyter Session in kernel.ts with disableUI = false
debug 14:32:36.928: Cell 1 executed with state Success
debug 14:32:36.928: VSCodeNotebookController::handleExecution, Class name = x, completed in 5764ms, has a falsy return value
debug 14:36:08.923: notebook communications already initialized for editor /gpfs/soma_fs/scratch/meulemeester/notebooks/test.ipynb
debug 14:36:13.526: VSCodeNotebookController::handleExecution, Class name = x (started execution)
debug 14:36:13.527: Execute Cell 0 /gpfs/soma_fs/scratch/meulemeester/notebooks/test.ipynb
debug 14:36:13.527: start the kernel, options.disableUI=false for /gpfs/soma_fs/scratch/meulemeester/notebooks/test.ipynb
debug 14:36:13.528: Start Jupyter Session in kernel.ts with disableUI = false
debug 14:36:13.606: Cell 0 executed with state Success
debug 14:36:13.606: VSCodeNotebookController::handleExecution, Class name = x, completed in 80ms, has a falsy return value
debug 14:36:15.835: VSCodeNotebookController::handleExecution, Class name = x (started execution)
debug 14:36:15.835: Execute Cell 1 /gpfs/soma_fs/scratch/meulemeester/notebooks/test.ipynb
debug 14:36:15.835: start the kernel, options.disableUI=false for /gpfs/soma_fs/scratch/meulemeester/notebooks/test.ipynb
debug 14:36:15.835: Start Jupyter Session in kernel.ts with disableUI = false
debug 14:36:15.869: Cell 1 executed with state Success
debug 14:36:15.869: VSCodeNotebookController::handleExecution, Class name = x, completed in 34ms, has a falsy return value
debug 14:36:17.449: VSCodeNotebookController::handleExecution, Class name = x (started execution)
debug 14:36:17.449: Execute Cell 2 /gpfs/soma_fs/scratch/meulemeester/notebooks/test.ipynb
debug 14:36:17.449: start the kernel, options.disableUI=false for /gpfs/soma_fs/scratch/meulemeester/notebooks/test.ipynb
debug 14:36:17.450: Start Jupyter Session in kernel.ts with disableUI = false
debug 14:36:17.476: Cell 2 executed with state Success
debug 14:36:17.476: VSCodeNotebookController::handleExecution, Class name = x, completed in 27ms, has a falsy return value
debug 14:36:19.504: VSCodeNotebookController::handleExecution, Class name = x (started execution)
debug 14:36:19.504: Execute Cell 0 /gpfs/soma_fs/scratch/meulemeester/notebooks/test.ipynb
debug 14:36:19.505: start the kernel, options.disableUI=false for /gpfs/soma_fs/scratch/meulemeester/notebooks/test.ipynb
debug 14:36:19.505: Start Jupyter Session in kernel.ts with disableUI = false
debug 14:36:19.539: Cell 0 executed with state Success
debug 14:36:19.539: VSCodeNotebookController::handleExecution, Class name = x, completed in 35ms, has a falsy return value
debug 14:36:21.692: notebook communications already initialized for editor /gpfs/soma_fs/scratch/meulemeester/notebooks/plots_like_in_thesis.ipynb
info 14:36:22.849: Disposing kernel c8e6fca0a9a23fe9ef20fe89b8d4c8e6f18b6521cc31280c66adf1f6ab5feb86..python3./gpfs/soma_fs/scratch/meulemeester/anaconda_isf3/python./.-m#ipykernel_launcher for notebook /gpfs/soma_fs/scratch/meulemeester/notebooks/plots_like_in_thesis.ipynb due to selection of another kernel or closing of the notebook
info 14:36:22.849: Dispose Kernel '/gpfs/soma_fs/scratch/meulemeester/notebooks/plots_like_in_thesis.ipynb' associated with '/gpfs/soma_fs/scratch/meulemeester/notebooks/plots_like_in_thesis.ipynb'
debug 14:36:22.849: Cancel pending cells
debug 14:36:22.850: Shutdown session - current session, called from Error:
	at _.shutdownImplementation (/gpfs/soma_fs/home/meulemeester/.vscode-server/extensions/ms-toolsai.jupyter-2022.11.1003161031/out/extension.node.js:2:1750898)
	at _.dispose (/gpfs/soma_fs/home/meulemeester/.vscode-server/extensions/ms-toolsai.jupyter-2022.11.1003161031/out/extension.node.js:2:1743928)
	at /gpfs/soma_fs/home/meulemeester/.vscode-server/extensions/ms-toolsai.jupyter-2022.11.1003161031/out/extension.node.js:2:2052368
	at t.Kernel.dispose (/gpfs/soma_fs/home/meulemeester/.vscode-server/extensions/ms-toolsai.jupyter-2022.11.1003161031/out/extension.node.js:2:2052573)
	at x.onDidChangeSelectedNotebooks (/gpfs/soma_fs/home/meulemeester/.vscode-server/extensions/ms-toolsai.jupyter-2022.11.1003161031/out/extension.node.js:2:2389523)
	at h.invoke (/gpfs/soma_fs/home/meulemeester/.vscode-server/bin/6261075646f055b99068d3688932416f2346dd3b/out/vs/workbench/api/node/extensionHostProcess.js:61:145)
	at v.deliver (/gpfs/soma_fs/home/meulemeester/.vscode-server/bin/6261075646f055b99068d3688932416f2346dd3b/out/vs/workbench/api/node/extensionHostProcess.js:61:2266)
	at g.fire (/gpfs/soma_fs/home/meulemeester/.vscode-server/bin/6261075646f055b99068d3688932416f2346dd3b/out/vs/workbench/api/node/extensionHostProcess.js:61:1844)
	at m.$acceptNotebookAssociation (/gpfs/soma_fs/home/meulemeester/.vscode-server/bin/6261075646f055b99068d3688932416f2346dd3b/out/vs/workbench/api/node/extensionHostProcess.js:94:107297)
	at l._doInvokeHandler (/gpfs/soma_fs/home/meulemeester/.vscode-server/bin/6261075646f055b99068d3688932416f2346dd3b/out/vs/workbench/api/node/extensionHostProcess.js:102:13680)
	at l._invokeHandler (/gpfs/soma_fs/home/meulemeester/.vscode-server/bin/6261075646f055b99068d3688932416f2346dd3b/out/vs/workbench/api/node/extensionHostProcess.js:102:13362)
	at l._receiveRequest (/gpfs/soma_fs/home/meulemeester/.vscode-server/bin/6261075646f055b99068d3688932416f2346dd3b/out/vs/workbench/api/node/extensionHostProcess.js:102:12132)
	at l._receiveOneMessage (/gpfs/soma_fs/home/meulemeester/.vscode-server/bin/6261075646f055b99068d3688932416f2346dd3b/out/vs/workbench/api/node/extensionHostProcess.js:102:10834)
	at /gpfs/soma_fs/home/meulemeester/.vscode-server/bin/6261075646f055b99068d3688932416f2346dd3b/out/vs/workbench/api/node/extensionHostProcess.js:102:8941
	at h.invoke (/gpfs/soma_fs/home/meulemeester/.vscode-server/bin/6261075646f055b99068d3688932416f2346dd3b/out/vs/workbench/api/node/extensionHostProcess.js:61:145)
	at v.deliver (/gpfs/soma_fs/home/meulemeester/.vscode-server/bin/6261075646f055b99068d3688932416f2346dd3b/out/vs/workbench/api/node/extensionHostProcess.js:61:2266)
	at g.fire (/gpfs/soma_fs/home/meulemeester/.vscode-server/bin/6261075646f055b99068d3688932416f2346dd3b/out/vs/workbench/api/node/extensionHostProcess.js:61:1844)
	at r.fire (/gpfs/soma_fs/home/meulemeester/.vscode-server/bin/6261075646f055b99068d3688932416f2346dd3b/out/vs/workbench/api/node/extensionHostProcess.js:70:16515)
	at /gpfs/soma_fs/home/meulemeester/.vscode-server/bin/6261075646f055b99068d3688932416f2346dd3b/out/vs/workbench/api/node/extensionHostProcess.js:118:17104
	at h.invoke (/gpfs/soma_fs/home/meulemeester/.vscode-server/bin/6261075646f055b99068d3688932416f2346dd3b/out/vs/workbench/api/node/extensionHostProcess.js:61:145)
	at v.deliver (/gpfs/soma_fs/home/meulemeester/.vscode-server/bin/6261075646f055b99068d3688932416f2346dd3b/out/vs/workbench/api/node/extensionHostProcess.js:61:2266)
	at g.fire (/gpfs/soma_fs/home/meulemeester/.vscode-server/bin/6261075646f055b99068d3688932416f2346dd3b/out/vs/workbench/api/node/extensionHostProcess.js:61:1844)
	at r.fire (/gpfs/soma_fs/home/meulemeester/.vscode-server/bin/6261075646f055b99068d3688932416f2346dd3b/out/vs/workbench/api/node/extensionHostProcess.js:70:16515)
	at o._receiveMessage (/gpfs/soma_fs/home/meulemeester/.vscode-server/bin/6261075646f055b99068d3688932416f2346dd3b/out/vs/workbench/api/node/extensionHostProcess.js:70:21327)
	at /gpfs/soma_fs/home/meulemeester/.vscode-server/bin/6261075646f055b99068d3688932416f2346dd3b/out/vs/workbench/api/node/extensionHostProcess.js:70:20347
	at h.invoke (/gpfs/soma_fs/home/meulemeester/.vscode-server/bin/6261075646f055b99068d3688932416f2346dd3b/out/vs/workbench/api/node/extensionHostProcess.js:61:145)
	at v.deliver (/gpfs/soma_fs/home/meulemeester/.vscode-server/bin/6261075646f055b99068d3688932416f2346dd3b/out/vs/workbench/api/node/extensionHostProcess.js:61:2266)
	at g.fire (/gpfs/soma_fs/home/meulemeester/.vscode-server/bin/6261075646f055b99068d3688932416f2346dd3b/out/vs/workbench/api/node/extensionHostProcess.js:61:1844)
	at g.acceptChunk (/gpfs/soma_fs/home/meulemeester/.vscode-server/bin/6261075646f055b99068d3688932416f2346dd3b/out/vs/workbench/api/node/extensionHostProcess.js:70:13346)
	at /gpfs/soma_fs/home/meulemeester/.vscode-server/bin/6261075646f055b99068d3688932416f2346dd3b/out/vs/workbench/api/node/extensionHostProcess.js:70:12476
	at h.invoke (/gpfs/soma_fs/home/meulemeester/.vscode-server/bin/6261075646f055b99068d3688932416f2346dd3b/out/vs/workbench/api/node/extensionHostProcess.js:61:145)
	at v.deliver (/gpfs/soma_fs/home/meulemeester/.vscode-server/bin/6261075646f055b99068d3688932416f2346dd3b/out/vs/workbench/api/node/extensionHostProcess.js:61:2266)
	at g.fire (/gpfs/soma_fs/home/meulemeester/.vscode-server/bin/6261075646f055b99068d3688932416f2346dd3b/out/vs/workbench/api/node/extensionHostProcess.js:61:1844)
	at g._processReadQueue (/gpfs/soma_fs/home/meulemeester/.vscode-server/bin/6261075646f055b99068d3688932416f2346dd3b/out/vs/workbench/api/node/extensionHostProcess.js:70:32010)
debug 14:36:22.850: shutdownSession 545dcc35-a0b9-4fd7-bd57-7f67dca7ae4a, c8e6fca0a9a23fe9ef20fe89b8d4c8e6f18b6521cc31280c66adf1f6ab5feb86..python3./gpfs/soma_fs/scratch/meulemeester/anaconda_isf3/python./.-m#ipykernel_launcher - start
debug 14:36:22.850: Session cannot be shutdown c8e6fca0a9a23fe9ef20fe89b8d4c8e6f18b6521cc31280c66adf1f6ab5feb86..python3./gpfs/soma_fs/scratch/meulemeester/anaconda_isf3/python./.-m#ipykernel_launcher
debug 14:36:22.851: Kernel got disposed, hence there is no longer a kernel associated with /gpfs/soma_fs/scratch/meulemeester/notebooks/plots_like_in_thesis.ipynb
debug 14:36:22.853: Disposing request as the cell was deleted /gpfs/soma_fs/scratch/meulemeester/notebooks/plots_like_in_thesis.ipynb
debug 14:36:22.853: Disposing request as the cell was deleted /gpfs/soma_fs/scratch/meulemeester/notebooks/plots_like_in_thesis.ipynb
debug 14:36:22.862: Cancel executions after closing notebook /gpfs/soma_fs/scratch/meulemeester/notebooks/plots_like_in_thesis.ipynb
debug 14:36:22.862: Cancel pending cells
debug 14:36:22.862: Cancel executions after closing notebook /gpfs/soma_fs/scratch/meulemeester/notebooks/plots_like_in_thesis.ipynb
debug 14:36:22.862: notebook communications already initialized for editor /gpfs/soma_fs/scratch/meulemeester/notebooks/test.ipynb
debug 14:36:22.870: Shutdown session - get restart session
debug 14:36:22.870: Shutdown session -- complete
info 14:36:24.853: Creating server with url : http://<IP_ADDRESS>:11113/
debug 14:36:24.867: Disposing session manager
debug 14:36:24.867: SessionManager - dispose contents manager
debug 14:36:24.867: ShutdownSessionAndConnection - dispose session manager
debug 14:36:24.867: Finished disposing jupyter session manager
debug 14:36:24.868: UniversalRemoteKernelFinder: Writing 5 remote kernel connection metadata to cache
debug 14:36:24.880: Found 13 cached controllers
debug 14:36:24.880: Creating 13 controllers
debug 14:36:29.804: VSCodeNotebookController::handleExecution, Class name = x (started execution)
debug 14:36:29.804: Execute Cell 0 /gpfs/soma_fs/scratch/meulemeester/notebooks/test.ipynb
debug 14:36:29.804: start the kernel, options.disableUI=false for /gpfs/soma_fs/scratch/meulemeester/notebooks/test.ipynb
debug 14:36:29.805: Start Jupyter Session in kernel.ts with disableUI = false
debug 14:36:29.904: Cell 0 executed with state Success
debug 14:36:29.904: VSCodeNotebookController::handleExecution, Class name = x, completed in 100ms, has a falsy return value
debug 14:37:50.950: VSCodeNotebookController::handleExecution, Class name = x (started execution)
debug 14:37:50.953: notebook communications already initialized for editor /gpfs/soma_fs/scratch/meulemeester/notebooks/test.ipynb
debug 14:37:50.960: notebook communications already initialized for editor /gpfs/soma_fs/scratch/meulemeester/notebooks/test.ipynb
debug 14:37:50.966: notebook communications already initialized for editor /gpfs/soma_fs/scratch/meulemeester/notebooks/test.ipynb
debug 14:37:50.972: Execute Cell 1 /gpfs/soma_fs/scratch/meulemeester/notebooks/test.ipynb
debug 14:37:50.973: start the kernel, options.disableUI=false for /gpfs/soma_fs/scratch/meulemeester/notebooks/test.ipynb
debug 14:37:50.974: Start Jupyter Session in kernel.ts with disableUI = false
info 14:38:17.947: Attempting to start a server because of preload conditions ...
debug 14:38:17.953: Get Active Interpreter, Class name = x (started execution), Arg 1: "/gpfs/soma_fs/scratch/meulemeester/notebooks/plots_like_in_thesis.ipynb"
info 14:38:17.955: Checking for server existence.
info 14:38:17.955: Preferred Remote kernel for /gpfs/soma_fs/scratch/meulemeester/notebooks/plots_like_in_thesis.ipynb is 545dcc35-a0b9-4fd7-bd57-7f67dca7ae4a
info 14:38:17.955: Switching remote kernel to 545dcc35-a0b9-4fd7-bd57-7f67dca7ae4a for file:///gpfs/soma_fs/scratch/meulemeester/notebooks/plots_like_in_thesis.ipynb
info 14:38:17.955: Using notebook.selectKernel to force remote kernel for file:///gpfs/soma_fs/scratch/meulemeester/notebooks/plots_like_in_thesis.ipynb to 545dcc35-a0b9-4fd7-bd57-7f67dca7ae4a
info 14:38:17.956: Checking for server usability.
info 14:38:17.956: Starting notebook server.
info 14:38:17.956: Connecting to server
info 14:38:17.956: Launching server
debug 14:38:17.956: Get Active Interpreter, Class name = x, completed in 3ms, has a truthy return value, Arg 1: "/gpfs/soma_fs/scratch/meulemeester/notebooks/plots_like_in_thesis.ipynb", Return Value: {"id":"/bin/python3","sysPrefix":"/usr","displayPath":{"$mid":1,"path":"/bin/python3","scheme":"file"},"envName":"","uri":{"$mid":1,"path":"/bin/python3","scheme":"file"},"displayName":"","envType":"Unknown","version":{"major":3,"minor":6,"patch":8,"raw":"3.6.8 (default, Oct 13 2020, 16:18:22) \n[GCC 4.8.5 20150623 (Red Hat 4.8.5-44)]"}}
info 14:38:17.957: Starting Notebook
debug 14:38:17.968: _jupyterPythonPathFunction: Couldn't find interpreter for "file:///gpfs/soma_fs/scratch/meulemeester/notebooks/plots_like_in_thesis.ipynb"
info 14:38:17.969: Generating custom default config at /tmp/44ff9c71-cfba-48db-b292-23b366eb17b3/jupyter_notebook_config.py
info 14:38:17.969: Starting Jupyter Notebook
Starting Jupyter from /gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python
debug 14:38:17.969: Create daemon, Class name = w (started execution), Arg 1: {"daemonModule":"vscode_datascience_helpers.jupyter_daemon","interpreter":{"id":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","sysPrefix":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","envPath":{"$mid":1,"fsPath":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","scheme":"file"},"displayPath":{"$mid":1,"fsPath":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","scheme":"file"},"envName":"","uri":{"$mid":1,"fsPath":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","external":"file:///gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","scheme":"file"},"displayName":"","envType":"Conda","version":{"major":2,"minor":7,"patch":13,"raw":"2.7.13 |Anaconda 4.2.0 (64-bit)| (default, Dec 20 2016, 23:09:15) \n[GCC 4.4.7 20120313 (Red Hat 4.4.7-1)]"}}}
debug 14:38:17.969: Get Interpreter details, Class name = x (started execution), Arg 1: "/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python"
debug 14:38:17.970: Interpreter details for /gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python from Python is {"internal":{"path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","id":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","executable":{"uri":{"$mid":1,"path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","scheme":"file"},"bitness":"64-bit","sysPrefix":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2"},"environment":{"type":"Conda","folderUri":{"$mid":1,"path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","scheme":"file"},"workspaceFolder":{"uri":{"$mid":1,"fsPath":"/gpfs/soma_fs/scratch/meulemeester","external":"file:///gpfs/soma_fs/scratch/meulemeester","path":"/gpfs/soma_fs/scratch/meulemeester","scheme":"file"},"name":"meulemeester","index":0}},"version":{"major":2,"minor":7,"micro":13,"release":{"level":"final","serial":0},"sysVersion":"2.7.13 |Anaconda 4.2.0 (64-bit)| (default, Dec 20 2016, 23:09:15) \n[GCC 4.4.7 20120313 (Red Hat 4.4.7-1)]"},"tools":["Conda"]},"id":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python"} and our mapping is {"id":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","sysPrefix":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","envPath":{"$mid":1,"path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","scheme":"file"},"displayPath":{"$mid":1,"path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","scheme":"file"},"envName":"","uri":{"$mid":1,"path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","scheme":"file"},"displayName":"","envType":"Conda","version":{"major":2,"minor":7,"patch":13,"raw":"2.7.13 |Anaconda 4.2.0 (64-bit)| (default, Dec 20 2016, 23:09:15) \n[GCC 4.4.7 20120313 (Red Hat 4.4.7-1)]"}}
debug 14:38:17.971: Get Interpreter details, Class name = x, completed in 1ms, has a truthy return value, Arg 1: "/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python"
debug 14:38:17.971: Create activated Env, Class name = w (started execution), Arg 1: {"allowEnvironmentFetchExceptions":true,"interpreter":{"id":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","sysPrefix":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","envPath":{"$mid":1,"fsPath":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","scheme":"file"},"displayPath":{"$mid":1,"fsPath":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","scheme":"file"},"envName":"","uri":{"$mid":1,"fsPath":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","external":"file:///gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","scheme":"file"},"displayName":"","envType":"Conda","version":{"major":2,"minor":7,"patch":13,"raw":"2.7.13 |Anaconda 4.2.0 (64-bit)| (default, Dec 20 2016, 23:09:15) \n[GCC 4.4.7 20120313 (Red Hat 4.4.7-1)]"}}}
debug 14:38:17.971: Getting activated env variables, Class name = K (started execution), Arg 1: undefined, Arg 2: <Uri:/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python>, Arg 3: true
debug 14:38:17.971: Getting activated env variables impl, Class name = K (started execution), Arg 1: undefined, Arg 2: <Uri:/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python>
debug 14:38:17.971: Getting activated env variables ourselves, Class name = K (started execution), Arg 1: undefined, Arg 2: <Uri:/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python>
debug 14:38:17.971: Got activation Env Vars from cached promise with key /gpfs/soma_fs/scratch/meulemeester_/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python
debug 14:38:17.971: Getting activated env variables from Python, Class name = K (started execution), Arg 1: undefined, Arg 2: <Uri:/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python>
debug 14:38:17.971: Get Custom Env Variables, Class name = S (started execution), Arg 1: undefined, Arg 2: "RunPythonCode"
info 14:38:17.971: Not using daemon support for /gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python - Interpreter Version: 2 disablePythonDaemon: undefined
debug 14:38:17.973: Getting activated env variables ourselves, Class name = K, completed in 2ms, has a falsy return value, Arg 1: undefined, Arg 2: <Uri:/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python>
debug 14:38:17.973: Got env vars ourselves /gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python in 2ms with 0 variables
debug 14:38:17.973: Get Custom Env Variables, Class name = S, completed in 2ms, has a truthy return value, Arg 1: undefined, Arg 2: "RunPythonCode"
debug 14:38:17.973: Getting activated env variables impl, Class name = K, completed in 2ms, has a falsy return value, Arg 1: undefined, Arg 2: <Uri:/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python>
debug 14:38:18.058: Getting activated env variables, Class name = K, completed in 87ms, has a falsy return value, Arg 1: undefined, Arg 2: <Uri:/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python>, Arg 3: true
debug 14:38:18.059: Create ProcessService, Class name = h (started execution), Arg 1: undefined
debug 14:38:18.059: Get Custom Env Variables, Class name = S (started execution), Arg 1: undefined, Arg 2: "RunNonPythonCode"
debug 14:38:18.061: Get Custom Env Variables, Class name = S, completed in 2ms, has a truthy return value, Arg 1: undefined, Arg 2: "RunNonPythonCode"
debug 14:38:18.061: Create ProcessService, Class name = h, completed in 3ms, has a truthy return value, Arg 1: undefined
debug 14:38:18.061: Creating execution process, Class name = w, completed in 3ms, has a truthy return value, Arg 1: {"interpreter":{"id":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","sysPrefix":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","envPath":{"$mid":1,"fsPath":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","scheme":"file"},"displayPath":{"$mid":1,"fsPath":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","scheme":"file"},"envName":"","uri":{"$mid":1,"fsPath":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","external":"file:///gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","scheme":"file"},"displayName":"","envType":"Conda","version":{"major":2,"minor":7,"patch":13,"raw":"2.7.13 |Anaconda 4.2.0 (64-bit)| (default, Dec 20 2016, 23:09:15) \n[GCC 4.4.7 20120313 (Red Hat 4.4.7-1)]"}}}, Return Value: {}
debug 14:38:18.061: Create activated Env, Class name = w, completed in 90ms, has a truthy return value, Arg 1: {"allowEnvironmentFetchExceptions":true,"interpreter":{"id":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","sysPrefix":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","envPath":{"$mid":1,"fsPath":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","scheme":"file"},"displayPath":{"$mid":1,"fsPath":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","scheme":"file"},"envName":"","uri":{"$mid":1,"fsPath":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","external":"file:///gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","scheme":"file"},"displayName":"","envType":"Conda","version":{"major":2,"minor":7,"patch":13,"raw":"2.7.13 |Anaconda 4.2.0 (64-bit)| (default, Dec 20 2016, 23:09:15) \n[GCC 4.4.7 20120313 (Red Hat 4.4.7-1)]"}}}
debug 14:38:18.061: Create daemon, Class name = w, completed in 92ms, has a truthy return value, Arg 1: {"daemonModule":"vscode_datascience_helpers.jupyter_daemon","interpreter":{"id":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","sysPrefix":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","envPath":{"$mid":1,"fsPath":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","scheme":"file"},"displayPath":{"$mid":1,"fsPath":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","scheme":"file"},"envName":"","uri":{"$mid":1,"fsPath":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","external":"file:///gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","scheme":"file"},"displayName":"","envType":"Conda","version":{"major":2,"minor":7,"patch":13,"raw":"2.7.13 |Anaconda 4.2.0 (64-bit)| (default, Dec 20 2016, 23:09:15) \n[GCC 4.4.7 20120313 (Red Hat 4.4.7-1)]"}}}
debug 14:38:18.061: Getting activated env variables, Class name = K (started execution), Arg 1: undefined, Arg 2: <Uri:/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python>, Arg 3: true
debug 14:38:18.061: Getting activated env variables impl, Class name = K (started execution), Arg 1: undefined, Arg 2: <Uri:/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python>
debug 14:38:18.061: Getting activated env variables ourselves, Class name = K (started execution), Arg 1: undefined, Arg 2: <Uri:/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python>
debug 14:38:18.061: Got activation Env Vars from cached promise with key /gpfs/soma_fs/scratch/meulemeester_/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python
debug 14:38:18.061: Getting activated env variables from Python, Class name = K (started execution), Arg 1: undefined, Arg 2: <Uri:/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python>
debug 14:38:18.061: Get Custom Env Variables, Class name = S (started execution), Arg 1: undefined, Arg 2: "RunPythonCode"
debug 14:38:18.064: Getting activated env variables ourselves, Class name = K, completed in 3ms, has a falsy return value, Arg 1: undefined, Arg 2: <Uri:/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python>
debug 14:38:18.064: Got env vars ourselves /gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python in 3ms with 0 variables
debug 14:38:18.064: Get Custom Env Variables, Class name = S, completed in 3ms, has a truthy return value, Arg 1: undefined, Arg 2: "RunPythonCode"
debug 14:38:18.064: Getting activated env variables impl, Class name = K, completed in 3ms, has a falsy return value, Arg 1: undefined, Arg 2: <Uri:/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python>
debug 14:38:18.142: Getting activated env variables, Class name = K, completed in 81ms, has a falsy return value, Arg 1: undefined, Arg 2: <Uri:/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python>, Arg 3: true
info 14:38:18.218: Process Execution: > /gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python -m jupyter notebook --no-browser --notebook-dir="/gpfs/soma_fs/scratch/meulemeester" --config=/tmp/44ff9c71-cfba-48db-b292-23b366eb17b3/jupyter_notebook_config.py --NotebookApp.iopub_data_rate_limit=10000000000.0
> /gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python -m jupyter notebook --no-browser --notebook-dir="/gpfs/soma_fs/scratch/meulemeester" --config=/tmp/44ff9c71-cfba-48db-b292-23b366eb17b3/jupyter_notebook_config.py --NotebookApp.iopub_data_rate_limit=10000000000.0
info 14:38:18.219: Waiting for Jupyter Notebook
jupyter: 'notebook' is not a Jupyter command
info 14:38:18.251: jupyter: 'notebook' is not a Jupyter command

error 14:38:18.254: Error starting server in serverPreload:  [i [Error]: Jupyter server crashed. Unable to connect.
Error code from Jupyter: 1
jupyter: 'notebook' is not a Jupyter command

	at t.JupyterConnectionWaiter.rejectStartPromise (/gpfs/soma_fs/home/meulemeester/.vscode-server/extensions/ms-toolsai.jupyter-2022.11.1003161031/out/extension.node.js:2:1953156)
	at t._complete (/gpfs/soma_fs/home/meulemeester/.vscode-server/extensions/ms-toolsai.jupyter-2022.11.1003161031/out/extension.node.js:2:1953790)
	at t.n (/gpfs/soma_fs/home/meulemeester/.vscode-server/extensions/ms-toolsai.jupyter-2022.11.1003161031/out/extension.node.js:2:1135801)
	at t.__tryOrUnsub (/gpfs/soma_fs/home/meulemeester/.vscode-server/extensions/ms-toolsai.jupyter-2022.11.1003161031/out/extension.node.js:2:1136043)
	at t.complete (/gpfs/soma_fs/home/meulemeester/.vscode-server/extensions/ms-toolsai.jupyter-2022.11.1003161031/out/extension.node.js:2:1135936)
	at t._complete (/gpfs/soma_fs/home/meulemeester/.vscode-server/extensions/ms-toolsai.jupyter-2022.11.1003161031/out/extension.node.js:2:1134416)
	at t.complete (/gpfs/soma_fs/home/meulemeester/.vscode-server/extensions/ms-toolsai.jupyter-2022.11.1003161031/out/extension.node.js:2:1134115)
	at ChildProcess.<anonymous> (/gpfs/soma_fs/home/meulemeester/.vscode-server/extensions/ms-toolsai.jupyter-2022.11.1003161031/out/extension.node.js:7:63520)
	at Object.onceWrapper (node:events:646:26)
	at ChildProcess.emit (node:events:538:35)
	at Process.ChildProcess._handle.onexit (node:internal/child_process:291:12)] {
  category: 'jupyterconnection'
}
debug 14:38:18.452: Create daemon, Class name = w (started execution), Arg 1: {"daemonModule":"vscode_datascience_helpers.jupyter_daemon","interpreter":{"id":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","sysPrefix":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","envPath":{"$mid":1,"fsPath":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","scheme":"file"},"displayPath":{"$mid":1,"fsPath":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","scheme":"file"},"envName":"","uri":{"$mid":1,"fsPath":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","external":"file:///gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","scheme":"file"},"displayName":"","envType":"Conda","version":{"major":2,"minor":7,"patch":13,"raw":"2.7.13 |Anaconda 4.2.0 (64-bit)| (default, Dec 20 2016, 23:09:15) \n[GCC 4.4.7 20120313 (Red Hat 4.4.7-1)]"}}}
debug 14:38:18.452: Get Interpreter details, Class name = x (started execution), Arg 1: "/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python"
debug 14:38:18.454: Interpreter details for /gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python from Python is {"internal":{"path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","id":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","executable":{"uri":{"$mid":1,"path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","scheme":"file"},"bitness":"64-bit","sysPrefix":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2"},"environment":{"type":"Conda","folderUri":{"$mid":1,"path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","scheme":"file"},"workspaceFolder":{"uri":{"$mid":1,"fsPath":"/gpfs/soma_fs/scratch/meulemeester","external":"file:///gpfs/soma_fs/scratch/meulemeester","path":"/gpfs/soma_fs/scratch/meulemeester","scheme":"file"},"name":"meulemeester","index":0}},"version":{"major":2,"minor":7,"micro":13,"release":{"level":"final","serial":0},"sysVersion":"2.7.13 |Anaconda 4.2.0 (64-bit)| (default, Dec 20 2016, 23:09:15) \n[GCC 4.4.7 20120313 (Red Hat 4.4.7-1)]"},"tools":["Conda"]},"id":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python"} and our mapping is {"id":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","sysPrefix":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","envPath":{"$mid":1,"path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","scheme":"file"},"displayPath":{"$mid":1,"path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","scheme":"file"},"envName":"","uri":{"$mid":1,"path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","scheme":"file"},"displayName":"","envType":"Conda","version":{"major":2,"minor":7,"patch":13,"raw":"2.7.13 |Anaconda 4.2.0 (64-bit)| (default, Dec 20 2016, 23:09:15) \n[GCC 4.4.7 20120313 (Red Hat 4.4.7-1)]"}}
debug 14:38:18.455: Get Interpreter details, Class name = x, completed in 3ms, has a truthy return value, Arg 1: "/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python"
debug 14:38:18.455: Create activated Env, Class name = w (started execution), Arg 1: {"allowEnvironmentFetchExceptions":true,"interpreter":{"id":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","sysPrefix":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","envPath":{"$mid":1,"fsPath":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","scheme":"file"},"displayPath":{"$mid":1,"fsPath":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","scheme":"file"},"envName":"","uri":{"$mid":1,"fsPath":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","external":"file:///gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","scheme":"file"},"displayName":"","envType":"Conda","version":{"major":2,"minor":7,"patch":13,"raw":"2.7.13 |Anaconda 4.2.0 (64-bit)| (default, Dec 20 2016, 23:09:15) \n[GCC 4.4.7 20120313 (Red Hat 4.4.7-1)]"}}}
debug 14:38:18.455: Getting activated env variables, Class name = K (started execution), Arg 1: undefined, Arg 2: <Uri:/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python>, Arg 3: true
debug 14:38:18.455: Getting activated env variables impl, Class name = K (started execution), Arg 1: undefined, Arg 2: <Uri:/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python>
debug 14:38:18.455: Getting activated env variables ourselves, Class name = K (started execution), Arg 1: undefined, Arg 2: <Uri:/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python>
debug 14:38:18.455: Got activation Env Vars from cached promise with key /gpfs/soma_fs/scratch/meulemeester_/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python
debug 14:38:18.455: Getting activated env variables from Python, Class name = K (started execution), Arg 1: undefined, Arg 2: <Uri:/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python>
debug 14:38:18.455: Get Custom Env Variables, Class name = S (started execution), Arg 1: undefined, Arg 2: "RunPythonCode"
info 14:38:18.455: Not using daemon support for /gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python - Interpreter Version: 2 disablePythonDaemon: undefined
debug 14:38:18.457: Getting activated env variables ourselves, Class name = K, completed in 1ms, has a falsy return value, Arg 1: undefined, Arg 2: <Uri:/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python>
debug 14:38:18.457: Got env vars ourselves /gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python in 2ms with 0 variables
debug 14:38:18.457: Get Custom Env Variables, Class name = S, completed in 2ms, has a truthy return value, Arg 1: undefined, Arg 2: "RunPythonCode"
debug 14:38:18.457: Getting activated env variables impl, Class name = K, completed in 2ms, has a falsy return value, Arg 1: undefined, Arg 2: <Uri:/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python>
debug 14:38:18.542: Getting activated env variables, Class name = K, completed in 87ms, has a falsy return value, Arg 1: undefined, Arg 2: <Uri:/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python>, Arg 3: true
debug 14:38:18.542: Create ProcessService, Class name = h (started execution), Arg 1: undefined
debug 14:38:18.542: Get Custom Env Variables, Class name = S (started execution), Arg 1: undefined, Arg 2: "RunNonPythonCode"
debug 14:38:18.542: Cached data exists getEnvironmentVariables, <No Resource>
debug 14:38:18.543: Get Custom Env Variables, Class name = S, completed in 1ms, has a truthy return value, Arg 1: undefined, Arg 2: "RunNonPythonCode"
debug 14:38:18.543: Create ProcessService, Class name = h, completed in 1ms, has a truthy return value, Arg 1: undefined
debug 14:38:18.543: Creating execution process, Class name = w, completed in 1ms, has a truthy return value, Arg 1: {"interpreter":{"id":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","sysPrefix":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","envPath":{"$mid":1,"fsPath":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","scheme":"file"},"displayPath":{"$mid":1,"fsPath":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","scheme":"file"},"envName":"","uri":{"$mid":1,"fsPath":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","external":"file:///gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","scheme":"file"},"displayName":"","envType":"Conda","version":{"major":2,"minor":7,"patch":13,"raw":"2.7.13 |Anaconda 4.2.0 (64-bit)| (default, Dec 20 2016, 23:09:15) \n[GCC 4.4.7 20120313 (Red Hat 4.4.7-1)]"}}}, Return Value: {}
debug 14:38:18.544: Create activated Env, Class name = w, completed in 89ms, has a truthy return value, Arg 1: {"allowEnvironmentFetchExceptions":true,"interpreter":{"id":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","sysPrefix":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","envPath":{"$mid":1,"fsPath":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","scheme":"file"},"displayPath":{"$mid":1,"fsPath":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","scheme":"file"},"envName":"","uri":{"$mid":1,"fsPath":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","external":"file:///gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","scheme":"file"},"displayName":"","envType":"Conda","version":{"major":2,"minor":7,"patch":13,"raw":"2.7.13 |Anaconda 4.2.0 (64-bit)| (default, Dec 20 2016, 23:09:15) \n[GCC 4.4.7 20120313 (Red Hat 4.4.7-1)]"}}}
debug 14:38:18.544: Create daemon, Class name = w, completed in 92ms, has a truthy return value, Arg 1: {"daemonModule":"vscode_datascience_helpers.jupyter_daemon","interpreter":{"id":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","sysPrefix":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","envPath":{"$mid":1,"fsPath":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","scheme":"file"},"displayPath":{"$mid":1,"fsPath":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","scheme":"file"},"envName":"","uri":{"$mid":1,"fsPath":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","external":"file:///gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","scheme":"file"},"displayName":"","envType":"Conda","version":{"major":2,"minor":7,"patch":13,"raw":"2.7.13 |Anaconda 4.2.0 (64-bit)| (default, Dec 20 2016, 23:09:15) \n[GCC 4.4.7 20120313 (Red Hat 4.4.7-1)]"}}}
info 14:38:18.861: Got env vars with python /gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python, with env var count 78 and custom env var count 30 in 890ms
debug 14:38:18.861: Getting activated env variables from Python, Class name = K, completed in 890ms, has a truthy return value, Arg 1: undefined, Arg 2: <Uri:/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python>
debug 14:38:18.861: Got env vars with python /gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python in 890ms with 78 variables
info 14:38:18.915: Got env vars with python /gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python, with env var count 78 and custom env var count 30 in 854ms
debug 14:38:18.915: Getting activated env variables from Python, Class name = K, completed in 854ms, has a truthy return value, Arg 1: undefined, Arg 2: <Uri:/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python>
debug 14:38:18.915: Got env vars with python /gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python in 854ms with 78 variables
info 14:38:19.295: Got env vars with python /gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python, with env var count 78 and custom env var count 30 in 840ms
debug 14:38:19.296: Getting activated env variables from Python, Class name = K, completed in 841ms, has a truthy return value, Arg 1: undefined, Arg 2: <Uri:/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python>
debug 14:38:19.296: Got env vars with python /gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python in 841ms with 78 variables
info 14:38:19.983: Results of switching remote kernel: false
debug 14:38:20.527: Cell 1 executed with state Success
debug 14:38:20.527: VSCodeNotebookController::handleExecution, Class name = x, completed in 29577ms, has a falsy return value

 "Everything" output of Jupyter
debug 14:40:47.835: notebook communications already initialized for editor /gpfs/soma_fs/scratch/meulemeester/notebooks/test.ipynb
debug 14:42:23.170: VSCodeNotebookController::handleExecution, Class name = x (started execution)
debug 14:42:23.173: Execute Cell 0 /gpfs/soma_fs/scratch/meulemeester/notebooks/test.ipynb
debug 14:42:23.173: start the kernel, options.disableUI=false for /gpfs/soma_fs/scratch/meulemeester/notebooks/test.ipynb
debug 14:42:23.175: Start Jupyter Session in kernel.ts with disableUI = false
everything 14:42:23.176: Telemetry Event : DATASCIENCE.EXECUTE_CELL Measures: undefined Props: {"resourceType":"notebook","resourceHash":"6c52f53f8bf6c282ff54441132f57500ebce942f9f00493f1fec3b6104243998","kernelSessionId":"5d429fd2bd042c8023609faeadb82831c8523cbb8c82dc056cde4604194602db","userExecutedCell":"true","kernelLanguage":"python","kernelId":"a11010d67c56d92a8646dc1c4a9708d6879f9c8d6e648d296c75bffae7e7ff03","pythonEnvironmentType":"Conda","pythonEnvironmentPath":"e550afd627d3619b88559faf72c8c4c2718d18a6c6ac91ac834e351f7ebf29dc","pythonEnvironmentVersion":"3.8.5","kernelConnectionType":"startUsingPythonInterpreter","pythonEnvironmentPackages":"{\"10179407bb8db6eccacc6da9ca62c2bbbb03bceec4db91e8a021d473e26a5d6c\":\"5.3.4\",\"89e1278be8b894a35e73eaa5c2afd0f745961fd702a4704b2d9c4f1e825f3671\":\"0.2.0\",\"9916a5fb8a8d51c1412e88aed98e4404cd55f7b96a71c51d539b3cc15ca1eb97\":\"1.0.0\",\"897912f1d7a38112511452e440bf4c54ef8e57a665e40648e89207d6628a2fd8\":\"6.1.7\",\"3ce399db4dc985069ce539ac0a6cb94e8dd3d49f36dd0b747f88e01358991251\":\"4.6.3\",\"d927ca7348e5732e599cad20c03d6e3a685e4ebffdb0af3535e1070009a9f978\":\"7.5.1\",\"d3e7ab21472587eb5ec6e05d0463e93a0b01f604b20c3def0e395b82a268fde5\":\"6.0.7\",\"94e6eda30eae4335f771fb7e325569f30a9795fd919105b9710e95fdc94e0d66\":\"5.0.8\",\"b53bcf919f24746d72094b8b86c0325cf40723d3d63240705db51a27b261bc96\":\"6.1.4\",\"d60b76184370a4ed8fd706458d5bbf85163af824d90732dd0f2e0c0897cd1c68\":\"19.0.2\",\"904075f7a02bc2bda9f4d0cb02f379d7f97c1c0470a4d646ddb5e2ff60ef0793\":\"NOT INSTALLED\",\"83716a35515f728928d7ce0aaa73e3445679d939169124b88fec90b522c45179\":\"6.0.4\",\"840eb2c1c4b04492f16d4affecb7e8d16837e3aaa81f0df570a65851411acb60\":\"5.0.5\"}","isInsiderExtension":"true","isPythonExtensionInstalled":"true","rawKernelSupported":"false","isamlcompute":"false"}
info 14:42:50.495: Attempting to start a server because of preload conditions ...
everything 14:42:50.500: Telemetry Event : DATASCIENCE.NATIVE.OPEN_NOTEBOOK_ALL Measures: {"nbformat":4,"nbformat_minor":4} Props: {"isInsiderExtension":"true","isPythonExtensionInstalled":"true","rawKernelSupported":"false","isamlcompute":"false"}
debug 14:42:50.500: Get Active Interpreter, Class name = x (started execution), Arg 1: "/gpfs/soma_fs/scratch/meulemeester/notebooks/plots_like_in_thesis.ipynb"
info 14:42:50.501: Checking for server existence.
info 14:42:50.502: Preferred Remote kernel for /gpfs/soma_fs/scratch/meulemeester/notebooks/plots_like_in_thesis.ipynb is 545dcc35-a0b9-4fd7-bd57-7f67dca7ae4a
info 14:42:50.502: Switching remote kernel to 545dcc35-a0b9-4fd7-bd57-7f67dca7ae4a for file:///gpfs/soma_fs/scratch/meulemeester/notebooks/plots_like_in_thesis.ipynb
info 14:42:50.502: Using notebook.selectKernel to force remote kernel for file:///gpfs/soma_fs/scratch/meulemeester/notebooks/plots_like_in_thesis.ipynb to 545dcc35-a0b9-4fd7-bd57-7f67dca7ae4a
info 14:42:50.502: Checking for server usability.
info 14:42:50.503: Starting notebook server.
info 14:42:50.503: Connecting to server
info 14:42:50.503: Launching server
debug 14:42:50.503: Get Active Interpreter, Class name = x, completed in 3ms, has a truthy return value, Arg 1: "/gpfs/soma_fs/scratch/meulemeester/notebooks/plots_like_in_thesis.ipynb", Return Value: {"id":"/bin/python3","sysPrefix":"/usr","displayPath":{"$mid":1,"path":"/bin/python3","scheme":"file"},"envName":"","uri":{"$mid":1,"path":"/bin/python3","scheme":"file"},"displayName":"","envType":"Unknown","version":{"major":3,"minor":6,"patch":8,"raw":"3.6.8 (default, Oct 13 2020, 16:18:22) \n[GCC 4.8.5 20150623 (Red Hat 4.8.5-44)]"}}
info 14:42:50.505: Starting Notebook
debug 14:42:50.528: _jupyterPythonPathFunction: Couldn't find interpreter for "file:///gpfs/soma_fs/scratch/meulemeester/notebooks/plots_like_in_thesis.ipynb"
info 14:42:50.529: Generating custom default config at /tmp/de949226-93e5-49df-a1a3-9e38b966aa83/jupyter_notebook_config.py
info 14:42:50.529: Starting Jupyter Notebook
Starting Jupyter from /gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python
debug 14:42:50.530: Create daemon, Class name = w (started execution), Arg 1: {"daemonModule":"vscode_datascience_helpers.jupyter_daemon","interpreter":{"id":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","sysPrefix":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","envPath":{"$mid":1,"fsPath":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","scheme":"file"},"displayPath":{"$mid":1,"fsPath":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","scheme":"file"},"envName":"","uri":{"$mid":1,"fsPath":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","external":"file:///gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","scheme":"file"},"displayName":"","envType":"Conda","version":{"major":2,"minor":7,"patch":13,"raw":"2.7.13 |Anaconda 4.2.0 (64-bit)| (default, Dec 20 2016, 23:09:15) \n[GCC 4.4.7 20120313 (Red Hat 4.4.7-1)]"}}}
debug 14:42:50.530: Get Interpreter details, Class name = x (started execution), Arg 1: "/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python"
debug 14:42:50.531: Interpreter details for /gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python from Python is {"internal":{"path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","id":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","executable":{"uri":{"$mid":1,"path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","scheme":"file"},"bitness":"64-bit","sysPrefix":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2"},"environment":{"type":"Conda","folderUri":{"$mid":1,"path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","scheme":"file"},"workspaceFolder":{"uri":{"$mid":1,"fsPath":"/gpfs/soma_fs/scratch/meulemeester","external":"file:///gpfs/soma_fs/scratch/meulemeester","path":"/gpfs/soma_fs/scratch/meulemeester","scheme":"file"},"name":"meulemeester","index":0}},"version":{"major":2,"minor":7,"micro":13,"release":{"level":"final","serial":0},"sysVersion":"2.7.13 |Anaconda 4.2.0 (64-bit)| (default, Dec 20 2016, 23:09:15) \n[GCC 4.4.7 20120313 (Red Hat 4.4.7-1)]"},"tools":["Conda"]},"id":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python"} and our mapping is {"id":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","sysPrefix":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","envPath":{"$mid":1,"path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","scheme":"file"},"displayPath":{"$mid":1,"path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","scheme":"file"},"envName":"","uri":{"$mid":1,"path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","scheme":"file"},"displayName":"","envType":"Conda","version":{"major":2,"minor":7,"patch":13,"raw":"2.7.13 |Anaconda 4.2.0 (64-bit)| (default, Dec 20 2016, 23:09:15) \n[GCC 4.4.7 20120313 (Red Hat 4.4.7-1)]"}}
debug 14:42:50.531: Get Interpreter details, Class name = x, completed in 1ms, has a truthy return value, Arg 1: "/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python"
debug 14:42:50.531: Create activated Env, Class name = w (started execution), Arg 1: {"allowEnvironmentFetchExceptions":true,"interpreter":{"id":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","sysPrefix":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","envPath":{"$mid":1,"fsPath":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","scheme":"file"},"displayPath":{"$mid":1,"fsPath":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","scheme":"file"},"envName":"","uri":{"$mid":1,"fsPath":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","external":"file:///gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","scheme":"file"},"displayName":"","envType":"Conda","version":{"major":2,"minor":7,"patch":13,"raw":"2.7.13 |Anaconda 4.2.0 (64-bit)| (default, Dec 20 2016, 23:09:15) \n[GCC 4.4.7 20120313 (Red Hat 4.4.7-1)]"}}}
debug 14:42:50.531: Getting activated env variables, Class name = K (started execution), Arg 1: undefined, Arg 2: <Uri:/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python>, Arg 3: true
debug 14:42:50.531: Getting activated env variables impl, Class name = K (started execution), Arg 1: undefined, Arg 2: <Uri:/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python>
debug 14:42:50.531: Getting activated env variables ourselves, Class name = K (started execution), Arg 1: undefined, Arg 2: <Uri:/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python>
debug 14:42:50.531: Got activation Env Vars from cached promise with key /gpfs/soma_fs/scratch/meulemeester_/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python
debug 14:42:50.531: Getting activated env variables from Python, Class name = K (started execution), Arg 1: undefined, Arg 2: <Uri:/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python>
debug 14:42:50.531: Get Custom Env Variables, Class name = S (started execution), Arg 1: undefined, Arg 2: "RunPythonCode"
info 14:42:50.531: Not using daemon support for /gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python - Interpreter Version: 2 disablePythonDaemon: undefined
debug 14:42:50.533: Getting activated env variables ourselves, Class name = K, completed in 2ms, has a falsy return value, Arg 1: undefined, Arg 2: <Uri:/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python>
debug 14:42:50.533: Got env vars ourselves /gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python in 2ms with 0 variables
debug 14:42:50.533: Get Custom Env Variables, Class name = S, completed in 2ms, has a truthy return value, Arg 1: undefined, Arg 2: "RunPythonCode"
everything 14:42:50.534: Telemetry Event : DS_INTERNAL.GET_ACTIVATED_ENV_VARIABLES Measures: {"duration":2} Props: {"envType":"Conda","source":"python","failed":"false","reason":"emptyVariables","isInsiderExtension":"true","isPythonExtensionInstalled":"true","rawKernelSupported":"false","isamlcompute":"false"}
info 14:42:50.534: Got env vars with python /gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python, with env var count 78 and custom env var count 30 in 3ms
debug 14:42:50.534: Getting activated env variables impl, Class name = K, completed in 3ms, has a falsy return value, Arg 1: undefined, Arg 2: <Uri:/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python>
debug 14:42:50.534: Getting activated env variables from Python, Class name = K, completed in 3ms, has a truthy return value, Arg 1: undefined, Arg 2: <Uri:/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python>
debug 14:42:50.534: Got env vars with python /gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python in 3ms with 78 variables
debug 14:42:50.534: Getting activated env variables, Class name = K, completed in 3ms, has a falsy return value, Arg 1: undefined, Arg 2: <Uri:/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python>, Arg 3: true
debug 14:42:50.534: Create ProcessService, Class name = h (started execution), Arg 1: undefined
debug 14:42:50.534: Get Custom Env Variables, Class name = S (started execution), Arg 1: undefined, Arg 2: "RunNonPythonCode"
debug 14:42:50.536: Get Custom Env Variables, Class name = S, completed in 2ms, has a truthy return value, Arg 1: undefined, Arg 2: "RunNonPythonCode"
debug 14:42:50.536: Create ProcessService, Class name = h, completed in 2ms, has a truthy return value, Arg 1: undefined
debug 14:42:50.536: Creating execution process, Class name = w, completed in 2ms, has a truthy return value, Arg 1: {"interpreter":{"id":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","sysPrefix":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","envPath":{"$mid":1,"fsPath":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","scheme":"file"},"displayPath":{"$mid":1,"fsPath":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","scheme":"file"},"envName":"","uri":{"$mid":1,"fsPath":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","external":"file:///gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","scheme":"file"},"displayName":"","envType":"Conda","version":{"major":2,"minor":7,"patch":13,"raw":"2.7.13 |Anaconda 4.2.0 (64-bit)| (default, Dec 20 2016, 23:09:15) \n[GCC 4.4.7 20120313 (Red Hat 4.4.7-1)]"}}}, Return Value: {}
debug 14:42:50.536: Create activated Env, Class name = w, completed in 5ms, has a truthy return value, Arg 1: {"allowEnvironmentFetchExceptions":true,"interpreter":{"id":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","sysPrefix":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","envPath":{"$mid":1,"fsPath":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","scheme":"file"},"displayPath":{"$mid":1,"fsPath":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","scheme":"file"},"envName":"","uri":{"$mid":1,"fsPath":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","external":"file:///gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","scheme":"file"},"displayName":"","envType":"Conda","version":{"major":2,"minor":7,"patch":13,"raw":"2.7.13 |Anaconda 4.2.0 (64-bit)| (default, Dec 20 2016, 23:09:15) \n[GCC 4.4.7 20120313 (Red Hat 4.4.7-1)]"}}}
debug 14:42:50.536: Create daemon, Class name = w, completed in 6ms, has a truthy return value, Arg 1: {"daemonModule":"vscode_datascience_helpers.jupyter_daemon","interpreter":{"id":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","sysPrefix":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","envPath":{"$mid":1,"fsPath":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","scheme":"file"},"displayPath":{"$mid":1,"fsPath":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","scheme":"file"},"envName":"","uri":{"$mid":1,"fsPath":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","external":"file:///gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","scheme":"file"},"displayName":"","envType":"Conda","version":{"major":2,"minor":7,"patch":13,"raw":"2.7.13 |Anaconda 4.2.0 (64-bit)| (default, Dec 20 2016, 23:09:15) \n[GCC 4.4.7 20120313 (Red Hat 4.4.7-1)]"}}}
debug 14:42:50.536: Getting activated env variables, Class name = K (started execution), Arg 1: undefined, Arg 2: <Uri:/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python>, Arg 3: true
debug 14:42:50.536: Getting activated env variables impl, Class name = K (started execution), Arg 1: undefined, Arg 2: <Uri:/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python>
debug 14:42:50.536: Getting activated env variables ourselves, Class name = K (started execution), Arg 1: undefined, Arg 2: <Uri:/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python>
debug 14:42:50.536: Got activation Env Vars from cached promise with key /gpfs/soma_fs/scratch/meulemeester_/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python
debug 14:42:50.536: Getting activated env variables from Python, Class name = K (started execution), Arg 1: undefined, Arg 2: <Uri:/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python>
debug 14:42:50.536: Get Custom Env Variables, Class name = S (started execution), Arg 1: undefined, Arg 2: "RunPythonCode"
debug 14:42:50.538: Getting activated env variables ourselves, Class name = K, completed in 2ms, has a falsy return value, Arg 1: undefined, Arg 2: <Uri:/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python>
debug 14:42:50.538: Got env vars ourselves /gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python in 2ms with 0 variables
debug 14:42:50.538: Get Custom Env Variables, Class name = S, completed in 2ms, has a truthy return value, Arg 1: undefined, Arg 2: "RunPythonCode"
everything 14:42:50.538: Telemetry Event : DS_INTERNAL.GET_ACTIVATED_ENV_VARIABLES Measures: {"duration":2} Props: {"envType":"Conda","source":"python","failed":"false","reason":"emptyVariables","isInsiderExtension":"true","isPythonExtensionInstalled":"true","rawKernelSupported":"false","isamlcompute":"false"}
info 14:42:50.538: Got env vars with python /gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python, with env var count 78 and custom env var count 30 in 2ms
debug 14:42:50.538: Getting activated env variables impl, Class name = K, completed in 2ms, has a falsy return value, Arg 1: undefined, Arg 2: <Uri:/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python>
debug 14:42:50.538: Getting activated env variables from Python, Class name = K, completed in 2ms, has a truthy return value, Arg 1: undefined, Arg 2: <Uri:/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python>
debug 14:42:50.539: Got env vars with python /gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python in 3ms with 78 variables
debug 14:42:50.539: Getting activated env variables, Class name = K, completed in 3ms, has a falsy return value, Arg 1: undefined, Arg 2: <Uri:/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python>, Arg 3: true
info 14:42:50.637: Process Execution: > /gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python -m jupyter notebook --no-browser --notebook-dir="/gpfs/soma_fs/scratch/meulemeester" --config=/tmp/de949226-93e5-49df-a1a3-9e38b966aa83/jupyter_notebook_config.py --NotebookApp.iopub_data_rate_limit=10000000000.0
> /gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python -m jupyter notebook --no-browser --notebook-dir="/gpfs/soma_fs/scratch/meulemeester" --config=/tmp/de949226-93e5-49df-a1a3-9e38b966aa83/jupyter_notebook_config.py --NotebookApp.iopub_data_rate_limit=10000000000.0
info 14:42:50.638: Waiting for Jupyter Notebook
jupyter: 'notebook' is not a Jupyter command
info 14:42:50.670: jupyter: 'notebook' is not a Jupyter command

error 14:42:50.673: Error starting server in serverPreload:  [i [Error]: Jupyter server crashed. Unable to connect.
Error code from Jupyter: 1
jupyter: 'notebook' is not a Jupyter command

	at t.JupyterConnectionWaiter.rejectStartPromise (/gpfs/soma_fs/home/meulemeester/.vscode-server/extensions/ms-toolsai.jupyter-2022.11.1003161031/out/extension.node.js:2:1953156)
	at t._complete (/gpfs/soma_fs/home/meulemeester/.vscode-server/extensions/ms-toolsai.jupyter-2022.11.1003161031/out/extension.node.js:2:1953790)
	at t.n (/gpfs/soma_fs/home/meulemeester/.vscode-server/extensions/ms-toolsai.jupyter-2022.11.1003161031/out/extension.node.js:2:1135801)
	at t.__tryOrUnsub (/gpfs/soma_fs/home/meulemeester/.vscode-server/extensions/ms-toolsai.jupyter-2022.11.1003161031/out/extension.node.js:2:1136043)
	at t.complete (/gpfs/soma_fs/home/meulemeester/.vscode-server/extensions/ms-toolsai.jupyter-2022.11.1003161031/out/extension.node.js:2:1135936)
	at t._complete (/gpfs/soma_fs/home/meulemeester/.vscode-server/extensions/ms-toolsai.jupyter-2022.11.1003161031/out/extension.node.js:2:1134416)
	at t.complete (/gpfs/soma_fs/home/meulemeester/.vscode-server/extensions/ms-toolsai.jupyter-2022.11.1003161031/out/extension.node.js:2:1134115)
	at ChildProcess.<anonymous> (/gpfs/soma_fs/home/meulemeester/.vscode-server/extensions/ms-toolsai.jupyter-2022.11.1003161031/out/extension.node.js:7:63520)
	at Object.onceWrapper (node:events:646:26)
	at ChildProcess.emit (node:events:538:35)
	at Process.ChildProcess._handle.onexit (node:internal/child_process:291:12)] {
  category: 'jupyterconnection'
}
debug 14:42:51.000: Create daemon, Class name = w (started execution), Arg 1: {"daemonModule":"vscode_datascience_helpers.jupyter_daemon","interpreter":{"id":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","sysPrefix":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","envPath":{"$mid":1,"fsPath":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","scheme":"file"},"displayPath":{"$mid":1,"fsPath":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","scheme":"file"},"envName":"","uri":{"$mid":1,"fsPath":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","external":"file:///gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","scheme":"file"},"displayName":"","envType":"Conda","version":{"major":2,"minor":7,"patch":13,"raw":"2.7.13 |Anaconda 4.2.0 (64-bit)| (default, Dec 20 2016, 23:09:15) \n[GCC 4.4.7 20120313 (Red Hat 4.4.7-1)]"}}}
debug 14:42:51.000: Get Interpreter details, Class name = x (started execution), Arg 1: "/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python"
debug 14:42:51.002: Interpreter details for /gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python from Python is {"internal":{"path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","id":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","executable":{"uri":{"$mid":1,"path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","scheme":"file"},"bitness":"64-bit","sysPrefix":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2"},"environment":{"type":"Conda","folderUri":{"$mid":1,"path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","scheme":"file"},"workspaceFolder":{"uri":{"$mid":1,"fsPath":"/gpfs/soma_fs/scratch/meulemeester","external":"file:///gpfs/soma_fs/scratch/meulemeester","path":"/gpfs/soma_fs/scratch/meulemeester","scheme":"file"},"name":"meulemeester","index":0}},"version":{"major":2,"minor":7,"micro":13,"release":{"level":"final","serial":0},"sysVersion":"2.7.13 |Anaconda 4.2.0 (64-bit)| (default, Dec 20 2016, 23:09:15) \n[GCC 4.4.7 20120313 (Red Hat 4.4.7-1)]"},"tools":["Conda"]},"id":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python"} and our mapping is {"id":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","sysPrefix":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","envPath":{"$mid":1,"path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","scheme":"file"},"displayPath":{"$mid":1,"path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","scheme":"file"},"envName":"","uri":{"$mid":1,"path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","scheme":"file"},"displayName":"","envType":"Conda","version":{"major":2,"minor":7,"patch":13,"raw":"2.7.13 |Anaconda 4.2.0 (64-bit)| (default, Dec 20 2016, 23:09:15) \n[GCC 4.4.7 20120313 (Red Hat 4.4.7-1)]"}}
debug 14:42:51.002: Get Interpreter details, Class name = x, completed in 2ms, has a truthy return value, Arg 1: "/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python"
debug 14:42:51.002: Create activated Env, Class name = w (started execution), Arg 1: {"allowEnvironmentFetchExceptions":true,"interpreter":{"id":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","sysPrefix":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","envPath":{"$mid":1,"fsPath":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","scheme":"file"},"displayPath":{"$mid":1,"fsPath":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","scheme":"file"},"envName":"","uri":{"$mid":1,"fsPath":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","external":"file:///gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","scheme":"file"},"displayName":"","envType":"Conda","version":{"major":2,"minor":7,"patch":13,"raw":"2.7.13 |Anaconda 4.2.0 (64-bit)| (default, Dec 20 2016, 23:09:15) \n[GCC 4.4.7 20120313 (Red Hat 4.4.7-1)]"}}}
debug 14:42:51.002: Getting activated env variables, Class name = K (started execution), Arg 1: undefined, Arg 2: <Uri:/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python>, Arg 3: true
debug 14:42:51.002: Getting activated env variables impl, Class name = K (started execution), Arg 1: undefined, Arg 2: <Uri:/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python>
debug 14:42:51.002: Getting activated env variables ourselves, Class name = K (started execution), Arg 1: undefined, Arg 2: <Uri:/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python>
debug 14:42:51.002: Got activation Env Vars from cached promise with key /gpfs/soma_fs/scratch/meulemeester_/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python
debug 14:42:51.003: Getting activated env variables from Python, Class name = K (started execution), Arg 1: undefined, Arg 2: <Uri:/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python>
debug 14:42:51.003: Get Custom Env Variables, Class name = S (started execution), Arg 1: undefined, Arg 2: "RunPythonCode"
info 14:42:51.003: Not using daemon support for /gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python - Interpreter Version: 2 disablePythonDaemon: undefined
debug 14:42:51.005: Getting activated env variables ourselves, Class name = K, completed in 3ms, has a falsy return value, Arg 1: undefined, Arg 2: <Uri:/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python>
debug 14:42:51.005: Got env vars ourselves /gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python in 3ms with 0 variables
debug 14:42:51.005: Get Custom Env Variables, Class name = S, completed in 2ms, has a truthy return value, Arg 1: undefined, Arg 2: "RunPythonCode"
everything 14:42:51.006: Telemetry Event : DS_INTERNAL.GET_ACTIVATED_ENV_VARIABLES Measures: {"duration":2} Props: {"envType":"Conda","source":"python","failed":"false","reason":"emptyVariables","isInsiderExtension":"true","isPythonExtensionInstalled":"true","rawKernelSupported":"false","isamlcompute":"false"}
info 14:42:51.006: Got env vars with python /gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python, with env var count 78 and custom env var count 30 in 3ms
debug 14:42:51.006: Getting activated env variables impl, Class name = K, completed in 4ms, has a falsy return value, Arg 1: undefined, Arg 2: <Uri:/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python>
debug 14:42:51.006: Getting activated env variables from Python, Class name = K, completed in 3ms, has a truthy return value, Arg 1: undefined, Arg 2: <Uri:/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python>
debug 14:42:51.006: Got env vars with python /gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python in 4ms with 78 variables
debug 14:42:51.006: Getting activated env variables, Class name = K, completed in 4ms, has a falsy return value, Arg 1: undefined, Arg 2: <Uri:/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python>, Arg 3: true
debug 14:42:51.006: Create ProcessService, Class name = h (started execution), Arg 1: undefined
debug 14:42:51.006: Get Custom Env Variables, Class name = S (started execution), Arg 1: undefined, Arg 2: "RunNonPythonCode"
debug 14:42:51.006: Cached data exists getEnvironmentVariables, <No Resource>
debug 14:42:51.006: Get Custom Env Variables, Class name = S, completed in 0ms, has a truthy return value, Arg 1: undefined, Arg 2: "RunNonPythonCode"
debug 14:42:51.007: Create ProcessService, Class name = h, completed in 1ms, has a truthy return value, Arg 1: undefined
debug 14:42:51.007: Creating execution process, Class name = w, completed in 1ms, has a truthy return value, Arg 1: {"interpreter":{"id":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","sysPrefix":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","envPath":{"$mid":1,"fsPath":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","scheme":"file"},"displayPath":{"$mid":1,"fsPath":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","scheme":"file"},"envName":"","uri":{"$mid":1,"fsPath":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","external":"file:///gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","scheme":"file"},"displayName":"","envType":"Conda","version":{"major":2,"minor":7,"patch":13,"raw":"2.7.13 |Anaconda 4.2.0 (64-bit)| (default, Dec 20 2016, 23:09:15) \n[GCC 4.4.7 20120313 (Red Hat 4.4.7-1)]"}}}, Return Value: {}
debug 14:42:51.007: Create activated Env, Class name = w, completed in 5ms, has a truthy return value, Arg 1: {"allowEnvironmentFetchExceptions":true,"interpreter":{"id":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","sysPrefix":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","envPath":{"$mid":1,"fsPath":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","scheme":"file"},"displayPath":{"$mid":1,"fsPath":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","scheme":"file"},"envName":"","uri":{"$mid":1,"fsPath":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","external":"file:///gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","scheme":"file"},"displayName":"","envType":"Conda","version":{"major":2,"minor":7,"patch":13,"raw":"2.7.13 |Anaconda 4.2.0 (64-bit)| (default, Dec 20 2016, 23:09:15) \n[GCC 4.4.7 20120313 (Red Hat 4.4.7-1)]"}}}
debug 14:42:51.007: Create daemon, Class name = w, completed in 7ms, has a truthy return value, Arg 1: {"daemonModule":"vscode_datascience_helpers.jupyter_daemon","interpreter":{"id":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","sysPrefix":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","envPath":{"$mid":1,"fsPath":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","scheme":"file"},"displayPath":{"$mid":1,"fsPath":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2","scheme":"file"},"envName":"","uri":{"$mid":1,"fsPath":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","external":"file:///gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","path":"/gpfs/soma_fs/scratch/meulemeester/anaconda_isf2/bin/python","scheme":"file"},"displayName":"","envType":"Conda","version":{"major":2,"minor":7,"patch":13,"raw":"2.7.13 |Anaconda 4.2.0 (64-bit)| (default, Dec 20 2016, 23:09:15) \n[GCC 4.4.7 20120313 (Red Hat 4.4.7-1)]"}}}
info 14:42:52.502: Results of switching remote kernel: false
debug 14:42:53.020: Cell 0 executed with state Success
debug 14:42:53.020: VSCodeNotebookController::handleExecution, Class name = x, completed in 29850ms, has a falsy return value

To answer your other questions:

Do you only get disconnected when running cells in a notebook?

The client reconnects independent of running cells

Do you have any other remote extensions installed?

I have the extensions Remote - SSH, Remote - SSH: Editing Configuration Files, Remote Development and Remote explorer installed locally, but not remotely.
Thanks for taking the time to help me out.

Can you share the large notebook? If not, my guess is that it has some large outputs, can you tell me what kinds of outputs are rendered?
I'm guessing that this lost time is due to sending output data to the frontend, or lots of communication between remote extension host and frontende.

Hi
Thanks again for helping me out. Im afraid I am unable to share the notebook, but it does indeed have quite large outputs.
There are dozens of simple lineplots, but also scatterplots with easily thousands of points (which tends to make matplotlib very angry), an animation that was created from a generated HTML with IPython.display.display(IPython.display.HTML(htmlSrc)), various gridspec plot grids containing weights of neural networks visualised with matplotlib.imshow, and some other various scatter plots with a couple hundreds of points.
Is there any way of speeding this up in VSCode? E.g. not rendering output on opening the notebook, or prioritizing running cells over loading notebook output... It is odd that this issue persists even when the notebook appears to be fully loaded. Firefox doesn't have this issue, but I suppose browsers do have two decades of development behind them to make image and html rendering godly efficient.

E.g. not rendering output on opening the notebook,

Well we actually don't render offscreen outputs by default unless something forces them to be rendered (eg search), but there is probably still some unnecessary work going on. I'll try with some large plots of different types, thanks for the details.

same here, I open the same notebook file in browser (jupyter-lab) and it runs smoothly

#12284 Is my issue relating to this issue?

Merging this into https://github.com/microsoft/vscode/issues/138784


Directive inside transcluded tab header doesn't have access to outside DOM

here is an example http://jsfiddle.net/demsey/kgqsdfo4/2/  , there is an error in console

Error: [$compile:ctreq] Controller 'outer', required by directive 'inner', can't be found!

how you can see inner directive can't get access to outer controller
I'm not sure if the problem is with Angular or Angular-UI
I tried to debug it and I found that tab-heading element doesn't have a parent node. here is the function from angular.js and element.parentNode at the bottom
function jqLiteInheritedData(element, name, value) {
  // if element is the document object work with the html element instead
  // this makes $(document).scope() possible
  if (element.nodeType == NODE_TYPE_DOCUMENT) {
    element = element.documentElement;
  }
  var names = isArray(name) ? name : [name];

  while (element) {
    for (var i = 0, ii = names.length; i < ii; i++) {
      if ((value = jqLite.data(element, names[i])) !== undefined) return value;
    }

    // If dealing with a document fragment node with a host element, and no parent, use the host
    // element as the parent. This enables directives within a Shadow DOM or polyfilled Shadow DOM
    // to lookup parent controllers.
    element = element.parentNode || (element.nodeType === NODE_TYPE_DOCUMENT_FRAGMENT && element.host);
  }
}

Can you please re-test in Angular 1.3 and UI Bootstrap 0.13?

hi, I tried with Angular 1.3 and 1.4 including Bootstrap 0.13. The same issue in both cases.
http://jsfiddle.net/kgqsdfo4/3/

Should note that this is the exact issue that is causing issues in #4624.
This may not be solvable, but at the least we can investigate what can we do.

Closing for the same reason as https://github.com/angular-ui/bootstrap/issues/4624#issuecomment-151517752 - notes on investigation there.


Setup tweaks - replaces #203

Why?

Because you told me to in the review of #203!

Ah... I did.
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