Issue installing Gnina

Issue summary
Followed steps and issue with Cuda
Steps to reproduce
cmake ..
CMake Error at /usr/share/cmake-3.16/Modules/CMakeDetermineCUDACompiler.cmake:25 (message):
Could not find compiler set in environment variable CUDACXX:
cuda.
Call Stack (most recent call first):
CMakeLists.txt:2 (project)
-- Configuring incomplete, errors occurred!
See also "/home/shallinan/gnina/build/CMakeFiles/CMakeOutput.log".
See also "/home/shallinan/gnina/build/CMakeFiles/CMakeError.log".
Your system configuration
Operating system: Ubuntu
Compiler:
CUDA version (if applicable): 10
CUDNN version (if applicable):
Python version: 3

Are you sure you have the CUDA SDK installed?  If so, I would recommend using a newer version of cmake - it might be more successful at finding the CUDA tools.

How do you install Cuda sdk?
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From: David Koes @.>
Sent: Tuesday, February 22, 2022 9:52:51 PM
To: gnina/gnina @.>
Cc: Suzanne Hallinan @.>; Author @.>
Subject: Re: [gnina/gnina] Issue installing Gnina (Issue #137)
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Are you sure you have the CUDA SDK installed? If so, I would recommend using a newer version of cmake - it might be more successful at finding the CUDA tools.
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cmake is already the newest version (3.16.3-1ubuntu1)

The newest version of cmake is 3.22 (https://cmake.org/)

Thanks. Updated cmake and same error occurring, I downloaded and installed CUDA as per instructions.

shallinan@DESKTOP-8D3HC57:~/gnina/build$ cmake ..
-- The C compiler identification is GNU 9.3.0
-- The CXX compiler identification is GNU 9.3.0
CMake Error at /usr/share/cmake-3.22/Modules/CMakeDetermineCUDACompiler.cmake:28 (message):
Could not find compiler set in environment variable CUDACXX:
cuda.
Call Stack (most recent call first):
CMakeLists.txt:2 (project)
-- Configuring incomplete, errors occurred!
See also "/home/shallinan/gnina/build/CMakeFiles/CMakeOutput.log".
See also "/home/shallinan/gnina/build/CMakeFiles/CMakeError.log".

Make sure nvcc is in your path so cmake can find it or set the cuda sdk location on the cmake command line.

Thanks, I did a fresh install of CUDA and it fixed that issue.
However..
Found CUDA: /usr (found suitable version "10.1", minimum required is "9.0")
CMake Error at CMakeLists.txt:62 (find_package):
By not providing "FindOpenBabel3.cmake" in CMAKE_MODULE_PATH this project
has asked CMake to find a package configuration file provided by
"OpenBabel3", but CMake did not find one.
Could not find a package configuration file provided by "OpenBabel3" with
any of the following names:
OpenBabel3Config.cmake
openbabel3-config.cmake

Add the installation prefix of "OpenBabel3" to CMAKE_PREFIX_PATH or set
"OpenBabel3_DIR" to a directory containing one of the above files.  If
"OpenBabel3" provides a separate development package or SDK, be sure it has
been installed.
-- Configuring incomplete, errors occurred!
See also "/home/shallinan/gnina/build/CMakeFiles/CMakeOutput.log".
See also "/home/shallinan/gnina/build/CMakeFiles/CMakeError.log".

shallinan@DESKTOP-8D3HC57:~/gnina/build/openbabel/build$ cmake -DWITH_MAEPARSER=OFF -DWITH_COORDGEN=OFF -DPYTHON_BINDINGS=ON -DRUN_SWIG=ON ..
-- The C compiler identification is GNU 9.3.0
-- The CXX compiler identification is GNU 9.3.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
CMake Deprecation Warning at CMakeLists.txt:14 (cmake_policy):
The OLD behavior for policy CMP0042 will be removed from a future version
of CMake.
The cmake-policies(7) manual explains that the OLD behaviors of all
policies are deprecated and that a policy should be set to OLD only under
specific short-term circumstances.  Projects should be ported to the NEW
behavior and not rely on setting a policy to OLD.
-- Using included inchi library.
-- Could NOT find LibXml2 (missing: LIBXML2_LIBRARY LIBXML2_INCLUDE_DIR)
CMake Warning at CMakeLists.txt:164 (message):
libxml2 not found - disabling CML support!
-- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.11")
-- Could NOT find wxWidgets (missing: wxWidgets_LIBRARIES wxWidgets_INCLUDE_DIRS)
-- Looking for conio.h
-- Looking for conio.h - not found
-- Looking for sys/time.h
-- Looking for sys/time.h - found
-- Looking for time.h
-- Looking for time.h - found
-- Looking for strings.h
-- Looking for strings.h - found
-- Looking for rpc/xdr.h
-- Looking for rpc/xdr.h - found
-- Looking for regex.h
-- Looking for regex.h - found
-- Looking for C++ include sstream
-- Looking for C++ include sstream - found
-- Looking for rint
-- Looking for rint - not found
-- Looking for snprintf
-- Looking for snprintf - found
-- Looking for sranddev
-- Looking for sranddev - not found
-- Looking for strcasecmp
-- Looking for strcasecmp - found
-- Looking for strncasecmp
-- Looking for strncasecmp - found
-- Looking for dlopen in dl
-- Looking for dlopen in dl - found
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of clock_t
-- Check size of clock_t - done
-- Performing Test SCANDIR_NEEDS_CONST
-- Performing Test SCANDIR_NEEDS_CONST - Failed
-- Performing Test HAVE_GCC_VISIBILITY
-- Performing Test HAVE_GCC_VISIBILITY - Success
-- Checking available shared pointer...
-- Performing Test HAVE_STD_SHARED_PTR
-- Performing Test HAVE_STD_SHARED_PTR - Success
-- Performing Test HAVE_STD_TR1_SHARED_PTR
-- Performing Test HAVE_STD_TR1_SHARED_PTR - Failed
-- Performing Test HAVE_STD_TR1_SHARED_PTR_IN_TR1_HEADER
-- Performing Test HAVE_STD_TR1_SHARED_PTR_IN_TR1_HEADER - Success
-- Use std::shared_ptr in memory
-- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.71.0/BoostConfig.cmake (found version "1.71.0") found components: program_options iostreams
-- Found Eigen3: /usr/include/eigen3 (Required is at least version "2.91.0")
-- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.71.0/BoostConfig.cmake (found version "1.71.0") found components: filesystem iostreams unit_test_framework
-- Maestro formats will NOT be supported. Please install Boost to enable Maestro formats.
-- Coordinate generation with Coordgen will NOT be supported. Please install Boost to enable Maestro formats.
-- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.1")
-- Could NOT find RapidJSON (missing: RAPIDJSON_INCLUDE_DIRS) (Required is at least version "1.1.0")
-- Downloaded RapidJSON to /home/shallinan/gnina/build/openbabel/external/rapidjson-1.1.0.
-- JSON formats will be supported. Using RapidJSON 1.1.0 at /home/shallinan/gnina/build/openbabel/external/rapidjson-1.1.0/include
-- Checking for module 'cairo'
--   No package 'cairo' found
-- Could NOT find Cairo (missing: CAIRO_LIBRARIES CAIRO_INCLUDE_DIRS)
-- Could NOT find Cairo. PNG output will NOT be supported.
-- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.71.0/BoostConfig.cmake (found suitable version "1.71.0", minimum required is "1.45.0") found components: system
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed
-- Check if compiler accepts -pthread
-- Check if compiler accepts -pthread - yes
-- Found Threads: TRUE
-- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.71.0/BoostConfig.cmake (found version "1.71.0") found components: program_options iostreams
-- Looking for getopt
-- Looking for getopt - found
-- Attempting to build the GUI
--    wxWidgets not found => GUI will not be built
-- Found PythonInterp: /home/shallinan/anaconda3/bin/python (found version "3.5.1")
CMake Deprecation Warning at scripts/CMakeLists.txt:1 (cmake_minimum_required):
Compatibility with CMake < 2.8.12 will be removed from a future version of
CMake.
Update the VERSION argument  value or use a ... suffix to tell
CMake that the project does not need compatibility with older versions.
-- Could NOT find SWIG (missing: SWIG_EXECUTABLE SWIG_DIR)
-- Could NOT find SWIG (missing: SWIG_EXECUTABLE SWIG_DIR) (Required is at least version "2.0")
-- SWIG 2.0 NOT found
-- Configuring done
-- Generating done
-- Build files have been written to: /home/shallinan/gnina/build/openbabel/build
shallinan@DESKTOP-8D3HC57:~/gnina/build/openbabel/build$ make
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In static member function ‘static void OpenBabel::matrix3x3::jacobi(unsigned int, double*, double*, double*)’:
cc1plus: warning: iteration<PHONE_NUMBER> invokes undefined behavior [-Waggressive-loop-optimizations]
/home/shallinan/gnina/build/openbabel/src/math/matrix3x3.cpp:650:19: note: within this loop
650 |     for (j = 0; j < static_cast(n)-1; j++)
|                 ^~~~~~~~~~~~~~~~~~~~~
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/home/shallinan/gnina/build/openbabel/src/stereo/perception.cpp: In function ‘void OpenBabel::StereoRefToImplicit(OpenBabel::OBMol&, OpenBabel::OBStereo::Ref)’:
/home/shallinan/gnina/build/openbabel/src/stereo/perception.cpp:2973:16: warning: ‘template class std::binder1st’ is deprecated [-Wdeprecated-declarations]
2973 |     const std::binder1st<std::equal_toOBStereo::Ref > equal_to_atomId = std::bind1st (equal_toOBStereo::Ref(), atomId);
|                ^~~~~~~~~
In file included from /usr/include/c++/9/bits/stl_function.h:1392,
from /usr/include/c++/9/bits/stl_tree.h:65,
from /usr/include/c++/9/map:60,
from /home/shallinan/gnina/build/openbabel/include/openbabel/base.h:26,
from /home/shallinan/gnina/build/openbabel/include/openbabel/stereo/stereo.h:27,
from /home/shallinan/gnina/build/openbabel/include/openbabel/stereo/tetranonplanar.h:27,
from /home/shallinan/gnina/build/openbabel/include/openbabel/stereo/tetrahedral.h:27,
from /home/shallinan/gnina/build/openbabel/src/stereo/perception.cpp:26:
/usr/include/c++/9/backward/binders.h:108:11: note: declared here
108 |     class binder1st
|           ^~~~~~~~~
/home/shallinan/gnina/build/openbabel/src/stereo/perception.cpp: In function ‘void OpenBabel::ImplicitRefToStereo(OpenBabel::OBMol&, OpenBabel::OBStereo::Ref, OpenBabel::OBStereo::Ref)’:
/home/shallinan/gnina/build/openbabel/src/stereo/perception.cpp:3005:16: warning: ‘template class std::binder1st’ is deprecated [-Wdeprecated-declarations]
3005 |     const std::binder1st<std::equal_toOBStereo::Ref > equal_to_implicitRef = std::bind1st (equal_toOBStereo::Ref(), (OBStereo::Ref) OBStereo::ImplicitRef);
|                ^~~~~~~~~
In file included from /usr/include/c++/9/bits/stl_function.h:1392,
from /usr/include/c++/9/bits/stl_tree.h:65,
from /usr/include/c++/9/map:60,
from /home/shallinan/gnina/build/openbabel/include/openbabel/base.h:26,
from /home/shallinan/gnina/build/openbabel/include/openbabel/stereo/stereo.h:27,
from /home/shallinan/gnina/build/openbabel/include/openbabel/stereo/tetranonplanar.h:27,
from /home/shallinan/gnina/build/openbabel/include/openbabel/stereo/tetrahedral.h:27,
from /home/shallinan/gnina/build/openbabel/src/stereo/perception.cpp:26:
/usr/include/c++/9/backward/binders.h:108:11: note: declared here
108 |     class binder1st
|           ^~~~~~~~~
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[ 33%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/strutil.c.o
[ 33%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/util.c.o
[ 33%] Linking C shared library ../../../lib/libinchi.so
[ 33%] Built target inchi
[ 33%] Building CXX object src/formats/CMakeFiles/smilesformat.dir/smilesformat.cpp.o
/home/shallinan/gnina/build/openbabel/src/formats/smilesformat.cpp: In member function ‘bool OpenBabel::OBMol2Cansmi::GetSmilesElement(OpenBabel::OBCanSmiNode*, std::vectorOpenBabel::OBAtom*&, std::vector&, std::string&)’:
/home/shallinan/gnina/build/openbabel/src/formats/smilesformat.cpp:2865:35: warning: ‘__builtin___snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=]
2865 |           snprintf(tcount, 10, "%d", hcount);
|                                   ^
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/ext/string_conversions.h:43,
from /usr/include/c++/9/bits/basic_string.h:6493,
from /usr/include/c++/9/string:55,
from /usr/include/c++/9/bits/locale_classes.h:40,
from /usr/include/c++/9/bits/ios_base.h:41,
from /usr/include/c++/9/ios:42,
from /usr/include/c++/9/ostream:38,
from /usr/include/c++/9/iostream:39,
from /home/shallinan/gnina/build/openbabel/include/openbabel/obconversion.h:24,
from /home/shallinan/gnina/build/openbabel/include/openbabel/obmolecformat.h:36,
from /home/shallinan/gnina/build/openbabel/src/formats/smilesformat.cpp:23:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 2 and 11 bytes into a destination of size 10
67 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
|          ~^~~~~~~~~~~
68 |        __bos (__s), __fmt, __va_arg_pack ());
|        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/shallinan/gnina/build/openbabel/src/formats/smilesformat.cpp:2857:35: warning: ‘__builtin___snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=]
2857 |           snprintf(tcount, 10, "%d", i);
|                                   ^
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/ext/string_conversions.h:43,
from /usr/include/c++/9/bits/basic_string.h:6493,
from /usr/include/c++/9/string:55,
from /usr/include/c++/9/bits/locale_classes.h:40,
from /usr/include/c++/9/bits/ios_base.h:41,
from /usr/include/c++/9/ios:42,
from /usr/include/c++/9/ostream:38,
from /usr/include/c++/9/iostream:39,
from /home/shallinan/gnina/build/openbabel/include/openbabel/obconversion.h:24,
from /home/shallinan/gnina/build/openbabel/include/openbabel/obmolecformat.h:36,
from /home/shallinan/gnina/build/openbabel/src/formats/smilesformat.cpp:23:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 2 and 11 bytes into a destination of size 10
67 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
|          ~^~~~~~~~~~~
68 |        __bos (__s), __fmt, __va_arg_pack ());
|        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 33%] Linking CXX shared module ../../lib/smilesformat.so
[ 33%] Built target smilesformat
[ 34%] Building CXX object src/formats/CMakeFiles/mdlformat.dir/mdlformat.cpp.o
/home/shallinan/gnina/build/openbabel/src/formats/mdlformat.cpp: In member function ‘std::string OpenBabel::MDLFormat::GetTimeDate()’:
/home/shallinan/gnina/build/openbabel/src/formats/mdlformat.cpp:1709:27: warning: ‘%02d’ directive output may be truncated writing between 2 and 11 bytes into a region of size between 0 and 9 [-Wformat-truncation=]
1709 |     snprintf(td, 11, "%02d%02d%02d%02d%02d", ts->tm_mon+1, ts->tm_mday,
|                           ^~~~
/home/shallinan/gnina/build/openbabel/src/formats/mdlformat.cpp:1709:22: note: directive argument in the range [-2147483648,<PHONE_NUMBER>]
1709 |     snprintf(td, 11, "%02d%02d%02d%02d%02d", ts->tm_mon+1, ts->tm_mday,
|                      ^~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/ext/string_conversions.h:43,
from /usr/include/c++/9/bits/basic_string.h:6493,
from /usr/include/c++/9/string:55,
from /usr/include/c++/9/bits/locale_classes.h:40,
from /usr/include/c++/9/bits/ios_base.h:41,
from /usr/include/c++/9/iomanip:40,
from /home/shallinan/gnina/build/openbabel/src/formats/mdlformat.cpp:27:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 11 and 56 bytes into a destination of size 11
67 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
|          ~^~~~~~~~~~~
68 |        __bos (__s), __fmt, __va_arg_pack ());
|        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 34%] Linking CXX shared module ../../lib/mdlformat.so
[ 34%] Built target mdlformat
[ 34%] Building CXX object src/formats/CMakeFiles/mol2format.dir/mol2format.cpp.o
/home/shallinan/gnina/build/openbabel/src/formats/mol2format.cpp: In member function ‘virtual bool OpenBabel::MOL2Format::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’:
/home/shallinan/gnina/build/openbabel/src/formats/mol2format.cpp:720:40: warning: ‘%-6s’ directive output may be truncated writing between 6 and 32767 bytes into a region of size between 32756 and 32760 [-Wformat-truncation=]
720 |         snprintf(buffer,BUFF_SIZE,"%7d %-6s   %9.4f %9.4f %9.4f %-5s %3s  %-8s %9.4f",
|                                        ^~~~
721 |                  atom->GetIdx(),label,
|                                 ~~~~~
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/ext/string_conversions.h:43,
from /usr/include/c++/9/bits/basic_string.h:6493,
from /usr/include/c++/9/string:55,
from /usr/include/c++/9/bits/locale_classes.h:40,
from /usr/include/c++/9/bits/ios_base.h:41,
from /usr/include/c++/9/ios:42,
from /usr/include/c++/9/ostream:38,
from /usr/include/c++/9/iostream:39,
from /home/shallinan/gnina/build/openbabel/include/openbabel/obconversion.h:24,
from /home/shallinan/gnina/build/openbabel/include/openbabel/obmolecformat.h:36,
from /home/shallinan/gnina/build/openbabel/src/formats/mol2format.cpp:17:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output 77 or more bytes (assuming 98361) into a destination of size 32768
67 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
|          ~^~~~~~~~~~~
68 |        __bos (__s), __fmt, __va_arg_pack ());
|        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/shallinan/gnina/build/openbabel/src/formats/mol2format.cpp:760:51: warning: ‘%2s’ directive output may be truncated writing between 2 and 32767 bytes into a region of size between 32730 and 32747 [-Wformat-truncation=]
760 |         snprintf(buffer, BUFF_SIZE,"%6d %5d %5d   %2s",
|                                                   ^~~
761 |                  bond->GetIdx()+1,bond->GetBeginAtomIdx(),bond->GetEndAtomIdx(),
762 |                  label);
|                  ~~~~~
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/ext/string_conversions.h:43,
from /usr/include/c++/9/bits/basic_string.h:6493,
from /usr/include/c++/9/string:55,
from /usr/include/c++/9/bits/locale_classes.h:40,
from /usr/include/c++/9/bits/ios_base.h:41,
from /usr/include/c++/9/ios:42,
from /usr/include/c++/9/ostream:38,
from /usr/include/c++/9/iostream:39,
from /home/shallinan/gnina/build/openbabel/include/openbabel/obconversion.h:24,
from /home/shallinan/gnina/build/openbabel/include/openbabel/obmolecformat.h:36,
from /home/shallinan/gnina/build/openbabel/src/formats/mol2format.cpp:17:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 24 and 32806 bytes into a destination of size 32768
67 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
|          ~^~~~~~~~~~~
68 |        __bos (__s), __fmt, __va_arg_pack ());
|        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 34%] Linking CXX shared module ../../lib/mol2format.so
[ 34%] Built target mol2format
[ 34%] Building CXX object src/formats/CMakeFiles/pdbformat.dir/pdbformat.cpp.o
/home/shallinan/gnina/build/openbabel/src/formats/pdbformat.cpp: In member function ‘virtual bool OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’:
/home/shallinan/gnina/build/openbabel/src/formats/pdbformat.cpp:684:58: warning: ‘__builtin___snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=]
684 |             snprintf(type_name, sizeof(type_name), " %-3s", tmp);
|                                                          ^
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/ext/string_conversions.h:43,
from /usr/include/c++/9/bits/basic_string.h:6493,
from /usr/include/c++/9/string:55,
from /usr/include/c++/9/bits/locale_classes.h:40,
from /usr/include/c++/9/bits/ios_base.h:41,
from /usr/include/c++/9/ios:42,
from /usr/include/c++/9/ostream:38,
from /usr/include/c++/9/iostream:39,
from /home/shallinan/gnina/build/openbabel/include/openbabel/obconversion.h:24,
from /home/shallinan/gnina/build/openbabel/include/openbabel/obmolecformat.h:36,
from /home/shallinan/gnina/build/openbabel/src/formats/pdbformat.cpp:17:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 5 and 11 bytes into a destination of size 10
67 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
|          ~^~~~~~~~~~~
68 |        __bos (__s), __fmt, __va_arg_pack ());
|        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/shallinan/gnina/build/openbabel/src/formats/pdbformat.cpp:702:70: warning: ‘__builtin___snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=]
702 |                     snprintf(padded_name, sizeof(padded_name), " %-3s", tmp);
|                                                                      ^
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/ext/string_conversions.h:43,
from /usr/include/c++/9/bits/basic_string.h:6493,
from /usr/include/c++/9/string:55,
from /usr/include/c++/9/bits/locale_classes.h:40,
from /usr/include/c++/9/bits/ios_base.h:41,
from /usr/include/c++/9/ios:42,
from /usr/include/c++/9/ostream:38,
from /usr/include/c++/9/iostream:39,
from /home/shallinan/gnina/build/openbabel/include/openbabel/obconversion.h:24,
from /home/shallinan/gnina/build/openbabel/include/openbabel/obmolecformat.h:36,
from /home/shallinan/gnina/build/openbabel/src/formats/pdbformat.cpp:17:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 5 and 11 bytes into a destination of size 10
67 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
|          ~^~~~~~~~~~~
68 |        __bos (__s), __fmt, __va_arg_pack ());
|        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/shallinan/gnina/build/openbabel/src/formats/pdbformat.cpp:739:35: warning: ‘%+d’ directive output may be truncated writing between 2 and 6 bytes into a region of size 3 [-Wformat-truncation=]
739 |             snprintf(scharge, 3, "%+d", charge);
|                                   ^~~
/home/shallinan/gnina/build/openbabel/src/formats/pdbformat.cpp:739:34: note: directive argument in the range [-32768, 32767]
739 |             snprintf(scharge, 3, "%+d", charge);
|                                  ^~~~~
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/ext/string_conversions.h:43,
from /usr/include/c++/9/bits/basic_string.h:6493,
from /usr/include/c++/9/string:55,
from /usr/include/c++/9/bits/locale_classes.h:40,
from /usr/include/c++/9/bits/ios_base.h:41,
from /usr/include/c++/9/ios:42,
from /usr/include/c++/9/ostream:38,
from /usr/include/c++/9/iostream:39,
from /home/shallinan/gnina/build/openbabel/include/openbabel/obconversion.h:24,
from /home/shallinan/gnina/build/openbabel/include/openbabel/obmolecformat.h:36,
from /home/shallinan/gnina/build/openbabel/src/formats/pdbformat.cpp:17:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 3 and 7 bytes into a destination of size 3
67 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
|          ~^~~~~~~~~~~
68 |        __bos (s), fmt, va_arg_pack ());
|        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 34%] Linking CXX shared module ../../lib/pdbformat.so
[ 34%] Built target pdbformat
[ 34%] Building CXX object src/formats/CMakeFiles/inchiformat.dir/inchiformat.cpp.o
[ 34%] Building CXX object src/formats/CMakeFiles/inchiformat.dir/getinchi.cpp.o
[ 35%] Building CXX object src/formats/CMakeFiles/inchiformat.dir//ops/unique.cpp.o
[ 35%] Linking CXX shared module ../../lib/inchiformat.so
[ 35%] Built target inchiformat
[ 35%] Building CXX object src/formats/CMakeFiles/asciiformat.dir/asciiformat.cpp.o
[ 36%] Building CXX object src/formats/CMakeFiles/asciiformat.dir//depict/asciipainter.cpp.o
[ 36%] Linking CXX shared module ../../lib/asciiformat.so
[ 36%] Built target asciiformat
[ 37%] Building CXX object src/formats/CMakeFiles/copyformat.dir/copyformat.cpp.o
[ 37%] Linking CXX shared module ../../lib/copyformat.so
[ 37%] Built target copyformat
[ 37%] Building CXX object src/formats/CMakeFiles/MNAformat.dir/MNAformat.cpp.o
[ 37%] Linking CXX shared module ../../lib/MNAformat.so
[ 37%] Built target MNAformat
[ 37%] Building CXX object src/formats/CMakeFiles/molreport.dir/molreport.cpp.o
[ 37%] Linking CXX shared module ../../lib/molreport.so
[ 37%] Built target molreport
[ 37%] Building CXX object src/formats/CMakeFiles/nulformat.dir/nulformat.cpp.o
[ 37%] Linking CXX shared module ../../lib/nulformat.so
[ 37%] Built target nulformat
[ 37%] Building CXX object src/formats/CMakeFiles/painterformat.dir/painterformat.cpp.o
[ 37%] Building CXX object src/formats/CMakeFiles/painterformat.dir//depict/commandpainter.cpp.o
[ 37%] Linking CXX shared module ../../lib/painterformat.so
[ 37%] Built target painterformat
[ 37%] Building CXX object src/formats/CMakeFiles/povrayformat.dir/povrayformat.cpp.o
[ 37%] Linking CXX shared module ../../lib/povrayformat.so
[ 37%] Built target povrayformat
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[ 51%] Building CXX object src/formats/CMakeFiles/CSRformat.dir/CSRformat.cpp.o
In file included from /usr/include/string.h:495,
from /usr/include/c++/9/cstring:42,
from /home/shallinan/gnina/build/openbabel/include/openbabel/plugin.h:29,
from /home/shallinan/gnina/build/openbabel/include/openbabel/format.h:22,
from /home/shallinan/gnina/build/openbabel/include/openbabel/obconversion.h:37,
from /home/shallinan/gnina/build/openbabel/include/openbabel/obmolecformat.h:36,
from /home/shallinan/gnina/build/openbabel/src/formats/CSRformat.cpp:17:
In function ‘char* strncpy(char*, const char*, size_t)’,
inlined from ‘char* OpenBabel::CSRFormat::PadString(char*, int)’ at /home/shallinan/gnina/build/openbabel/src/formats/CSRformat.cpp:192:12:
/usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:34: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ specified bound depends on the length of the source argument [-Wstringop-overflow=]
106 |   return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
|          ^~~~~~~~~~~~~~
/home/shallinan/gnina/build/openbabel/src/formats/CSRformat.cpp: In member function ‘char* OpenBabel::CSRFormat::PadString(char*, int)’:
/home/shallinan/gnina/build/openbabel/src/formats/CSRformat.cpp:192:12: note: length computed here
192 |     strncpy(output, input, strlen(input));
|     ~^~~~~~~~~~~~~~~~~~~~~~~~
[ 51%] Linking CXX shared module ../../lib/CSRformat.so
[ 51%] Built target CSRformat
[ 51%] Building CXX object src/formats/CMakeFiles/PQSformat.dir/PQSformat.cpp.o
[ 51%] Linking CXX shared module ../../lib/PQSformat.so
[ 51%] Built target PQSformat
[ 51%] Building CXX object src/formats/CMakeFiles/MCDLformat.dir/MCDLformat.cpp.o
/home/shallinan/gnina/build/openbabel/src/formats/MCDLformat.cpp: In member function ‘std::string OpenBabel::MCDLFormat::constring(int ()[4], char)’:
/home/shallinan/gnina/build/openbabel/src/formats/MCDLformat.cpp:214:31: warning: ‘%s’ directive writing up to 99 bytes into a region of size 82 [-Wformat-overflow=]
214 |                 sprintf(line,"%s%d",semis,icons[j]);
|                               ^~    ~~~~~
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/ext/string_conversions.h:43,
from /usr/include/c++/9/bits/basic_string.h:6493,
from /usr/include/c++/9/string:55,
from /usr/include/c++/9/bits/locale_classes.h:40,
from /usr/include/c++/9/bits/ios_base.h:41,
from /usr/include/c++/9/ios:42,
from /usr/include/c++/9/ostream:38,
from /usr/include/c++/9/iostream:39,
from /home/shallinan/gnina/build/openbabel/include/openbabel/obconversion.h:24,
from /home/shallinan/gnina/build/openbabel/include/openbabel/obmolecformat.h:36,
from /home/shallinan/gnina/build/openbabel/src/formats/MCDLformat.cpp:21:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 2 and 111 bytes into a destination of size 82
36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
|          ^~~~~~
37 |       __bos (__s), __fmt, __va_arg_pack ());
|       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 52%] Linking CXX shared module ../../lib/MCDLformat.so
[ 52%] Built target MCDLformat
[ 52%] Building CXX object src/formats/CMakeFiles/alchemyformat.dir/alchemyformat.cpp.o
[ 52%] Linking CXX shared module ../../lib/alchemyformat.so
[ 52%] Built target alchemyformat
[ 52%] Building CXX object src/formats/CMakeFiles/acrformat.dir/acrformat.cpp.o
[ 53%] Linking CXX shared module ../../lib/acrformat.so
[ 53%] Built target acrformat
[ 54%] Building CXX object src/formats/CMakeFiles/amberformat.dir/amberformat.cpp.o
[ 54%] Linking CXX shared module ../../lib/amberformat.so
[ 54%] Built target amberformat
[ 54%] Building CXX object src/formats/CMakeFiles/balstformat.dir/balstformat.cpp.o
[ 54%] Linking CXX shared module ../../lib/balstformat.so
[ 54%] Built target balstformat
[ 54%] Building CXX object src/formats/CMakeFiles/bgfformat.dir/bgfformat.cpp.o
[ 55%] Linking CXX shared module ../../lib/bgfformat.so
[ 55%] Built target bgfformat
[ 55%] Building CXX object src/formats/CMakeFiles/boxformat.dir/boxformat.cpp.o
[ 55%] Linking CXX shared module ../../lib/boxformat.so
[ 55%] Built target boxformat
[ 55%] Building CXX object src/formats/CMakeFiles/cacaoformat.dir/cacaoformat.cpp.o
[ 55%] Linking CXX shared module ../../lib/cacaoformat.so
[ 55%] Built target cacaoformat
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[ 56%] Linking CXX shared module ../../lib/cacheformat.so
[ 56%] Built target cacheformat
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[ 56%] Building CXX object src/formats/CMakeFiles/chem3dformat.dir/chem3dformat.cpp.o
[ 56%] Linking CXX shared module ../../lib/chem3dformat.so
[ 56%] Built target chem3dformat
[ 56%] Building CXX object src/formats/CMakeFiles/chemdrawct.dir/chemdrawct.cpp.o
[ 56%] Linking CXX shared module ../../lib/chemdrawct.so
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[ 57%] Linking CXX shared module ../../lib/crkformat.so
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[ 59%] Linking CXX shared module ../../lib/fastaformat.so
[ 59%] Built target fastaformat
[ 59%] Building CXX object src/formats/CMakeFiles/featformat.dir/featformat.cpp.o
[ 59%] Linking CXX shared module ../../lib/featformat.so
[ 59%] Built target featformat
[ 59%] Building CXX object src/formats/CMakeFiles/fhformat.dir/fhformat.cpp.o
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[ 61%] Linking CXX shared module ../../lib/fpsformat.so
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[ 61%] Linking CXX shared module ../../lib/freefracformat.so
[ 61%] Built target freefracformat
[ 61%] Building CXX object src/formats/CMakeFiles/ghemicalformat.dir/ghemicalformat.cpp.o
[ 61%] Linking CXX shared module ../../lib/ghemicalformat.so
[ 61%] Built target ghemicalformat
[ 61%] Building CXX object src/formats/CMakeFiles/gromos96format.dir/gromos96format.cpp.o
[ 61%] Linking CXX shared module ../../lib/gromos96format.so
[ 61%] Built target gromos96format
[ 62%] Building CXX object src/formats/CMakeFiles/groformat.dir/groformat.cpp.o
[ 62%] Linking CXX shared module ../../lib/groformat.so
[ 62%] Built target groformat
[ 62%] Building CXX object src/formats/CMakeFiles/lmpdatformat.dir/lmpdatformat.cpp.o
/home/shallinan/gnina/build/openbabel/src/formats/lmpdatformat.cpp: In member function ‘virtual bool OpenBabel::LMPDATFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’:
/home/shallinan/gnina/build/openbabel/src/formats/lmpdatformat.cpp:534:38: warning: ‘%11s’ directive output may be truncated writing between 11 and 32767 bytes into a region of size between 32695 and 32736 [-Wformat-truncation=]
534 |          "%-4d %4d %4d %4d %4d %4d # %11s\n",
|                                      ^~~~
......
541 |          DihedralString);
|          ~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/ext/string_conversions.h:43,
from /usr/include/c++/9/bits/basic_string.h:6493,
from /usr/include/c++/9/string:55,
from /usr/include/c++/9/bits/locale_classes.h:40,
from /usr/include/c++/9/bits/ios_base.h:41,
from /usr/include/c++/9/ios:42,
from /usr/include/c++/9/ostream:38,
from /usr/include/c++/9/iostream:39,
from /home/shallinan/gnina/build/openbabel/include/openbabel/obconversion.h:24,
from /home/shallinan/gnina/build/openbabel/include/openbabel/obmolecformat.h:36,
from /home/shallinan/gnina/build/openbabel/src/formats/lmpdatformat.cpp:15:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 45 and 32842 bytes into a destination of size 32768
67 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
|          ~^~~~~~~~~~~
68 |        __bos (__s), __fmt, __va_arg_pack ());
|        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/shallinan/gnina/build/openbabel/src/formats/lmpdatformat.cpp:516:38: warning: ‘%11s’ directive output may be truncated writing between 11 and 32767 bytes into a region of size between 32695 and 32736 [-Wformat-truncation=]
516 |          "%-4d %4d %4d %4d %4d %4d # %11s\n",
|                                      ^~~~
......
523 |          DihedralString);
|          ~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/ext/string_conversions.h:43,
from /usr/include/c++/9/bits/basic_string.h:6493,
from /usr/include/c++/9/string:55,
from /usr/include/c++/9/bits/locale_classes.h:40,
from /usr/include/c++/9/bits/ios_base.h:41,
from /usr/include/c++/9/ios:42,
from /usr/include/c++/9/ostream:38,
from /usr/include/c++/9/iostream:39,
from /home/shallinan/gnina/build/openbabel/include/openbabel/obconversion.h:24,
from /home/shallinan/gnina/build/openbabel/include/openbabel/obmolecformat.h:36,
from /home/shallinan/gnina/build/openbabel/src/formats/lmpdatformat.cpp:15:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 45 and 32842 bytes into a destination of size 32768
67 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
|          ~^~~~~~~~~~~
68 |        __bos (__s), __fmt, __va_arg_pack ());
|        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/shallinan/gnina/build/openbabel/src/formats/lmpdatformat.cpp:474:33: warning: ‘%8s’ directive output may be truncated writing between 8 and 32767 bytes into a region of size between 32707 and 32741 [-Wformat-truncation=]
474 |         "%-4d %4d %4d %4d %4d # %8s\n",
|                                 ^~~
......
480 |         AngleString);
|         ~~~~~~~~~~~
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/ext/string_conversions.h:43,
from /usr/include/c++/9/bits/basic_string.h:6493,
from /usr/include/c++/9/string:55,
from /usr/include/c++/9/bits/locale_classes.h:40,
from /usr/include/c++/9/bits/ios_base.h:41,
from /usr/include/c++/9/ios:42,
from /usr/include/c++/9/ostream:38,
from /usr/include/c++/9/iostream:39,
from /home/shallinan/gnina/build/openbabel/include/openbabel/obconversion.h:24,
from /home/shallinan/gnina/build/openbabel/include/openbabel/obmolecformat.h:36,
from /home/shallinan/gnina/build/openbabel/src/formats/lmpdatformat.cpp:15:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 37 and 32830 bytes into a destination of size 32768
67 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
|          ~^~~~~~~~~~~
68 |        __bos (__s), __fmt, __va_arg_pack ());
|        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/shallinan/gnina/build/openbabel/src/formats/lmpdatformat.cpp:458:33: warning: ‘%8s’ directive output may be truncated writing between 8 and 32767 bytes into a region of size between 32707 and 32741 [-Wformat-truncation=]
458 |         "%-4d %4d %4d %4d %4d # %8s\n",
|                                 ^~~
......
464 |         AngleString);
|         ~~~~~~~~~~~
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/ext/string_conversions.h:43,
from /usr/include/c++/9/bits/basic_string.h:6493,
from /usr/include/c++/9/string:55,
from /usr/include/c++/9/bits/locale_classes.h:40,
from /usr/include/c++/9/bits/ios_base.h:41,
from /usr/include/c++/9/ios:42,
from /usr/include/c++/9/ostream:38,
from /usr/include/c++/9/iostream:39,
from /home/shallinan/gnina/build/openbabel/include/openbabel/obconversion.h:24,
from /home/shallinan/gnina/build/openbabel/include/openbabel/obmolecformat.h:36,
from /home/shallinan/gnina/build/openbabel/src/formats/lmpdatformat.cpp:15:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 37 and 32830 bytes into a destination of size 32768
67 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
|          ~^~~~~~~~~~~
68 |        __bos (__s), __fmt, __va_arg_pack ());
|        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/shallinan/gnina/build/openbabel/src/formats/lmpdatformat.cpp:421:29: warning: ‘%5s’ directive output may be truncated writing between 5 and 32767 bytes into a region of size between 32719 and 32746 [-Wformat-truncation=]
421 |         "%-4d %4d %4d %4d # %5s\n",
|                             ^~~
......
426 |         BondString);
|         ~~~~~~~~~~
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/ext/string_conversions.h:43,
from /usr/include/c++/9/bits/basic_string.h:6493,
from /usr/include/c++/9/string:55,
from /usr/include/c++/9/bits/locale_classes.h:40,
from /usr/include/c++/9/bits/ios_base.h:41,
from /usr/include/c++/9/ios:42,
from /usr/include/c++/9/ostream:38,
from /usr/include/c++/9/iostream:39,
from /home/shallinan/gnina/build/openbabel/include/openbabel/obconversion.h:24,
from /home/shallinan/gnina/build/openbabel/include/openbabel/obmolecformat.h:36,
from /home/shallinan/gnina/build/openbabel/src/formats/lmpdatformat.cpp:15:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 29 and 32818 bytes into a destination of size 32768
67 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
|          ~^~~~~~~~~~~
68 |        __bos (__s), __fmt, __va_arg_pack ());
|        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/shallinan/gnina/build/openbabel/src/formats/lmpdatformat.cpp:407:29: warning: ‘%5s’ directive output may be truncated writing between 5 and 32767 bytes into a region of size between 32719 and 32746 [-Wformat-truncation=]
407 |         "%-4d %4d %4d %4d # %5s\n",
|                             ^~~
......
412 |         BondString);
|         ~~~~~~~~~~
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/ext/string_conversions.h:43,
from /usr/include/c++/9/bits/basic_string.h:6493,
from /usr/include/c++/9/string:55,
from /usr/include/c++/9/bits/locale_classes.h:40,
from /usr/include/c++/9/bits/ios_base.h:41,
from /usr/include/c++/9/ios:42,
from /usr/include/c++/9/ostream:38,
from /usr/include/c++/9/iostream:39,
from /home/shallinan/gnina/build/openbabel/include/openbabel/obconversion.h:24,
from /home/shallinan/gnina/build/openbabel/include/openbabel/obmolecformat.h:36,
from /home/shallinan/gnina/build/openbabel/src/formats/lmpdatformat.cpp:15:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 29 and 32818 bytes into a destination of size 32768
67 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
|          ~^~~~~~~~~~~
68 |        __bos (__s), __fmt, __va_arg_pack ());
|        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 63%] Linking CXX shared module ../../lib/lmpdatformat.so
[ 63%] Built target lmpdatformat
[ 63%] Building CXX object src/formats/CMakeFiles/lpmdformat.dir/lpmdformat.cpp.o
[ 63%] Linking CXX shared module ../../lib/lpmdformat.so
[ 63%] Built target lpmdformat
[ 63%] Building CXX object src/formats/CMakeFiles/mdffformat.dir/mdffformat.cpp.o
[ 63%] Linking CXX shared module ../../lib/mdffformat.so
[ 63%] Built target mdffformat
[ 63%] Building CXX object src/formats/CMakeFiles/mmcifformat.dir/mmcifformat.cpp.o
[ 63%] Linking CXX shared module ../../lib/mmcifformat.so
[ 63%] Built target mmcifformat
[ 63%] Building CXX object src/formats/CMakeFiles/mmodformat.dir/mmodformat.cpp.o
[ 64%] Linking CXX shared module ../../lib/mmodformat.so
[ 64%] Built target mmodformat
[ 64%] Building CXX object src/formats/CMakeFiles/moldenformat.dir/moldenformat.cpp.o
[ 64%] Linking CXX shared module ../../lib/moldenformat.so
[ 64%] Built target moldenformat
[ 64%] Building CXX object src/formats/CMakeFiles/mpdformat.dir/mpdformat.cpp.o
[ 64%] Linking CXX shared module ../../lib/mpdformat.so
[ 64%] Built target mpdformat
[ 64%] Building CXX object src/formats/CMakeFiles/mpqcformat.dir/mpqcformat.cpp.o
[ 64%] Linking CXX shared module ../../lib/mpqcformat.so
[ 64%] Built target mpqcformat
[ 64%] Building CXX object src/formats/CMakeFiles/msiformat.dir/msiformat.cpp.o
[ 65%] Linking CXX shared module ../../lib/msiformat.so
[ 65%] Built target msiformat
[ 65%] Building CXX object src/formats/CMakeFiles/msmsformat.dir/msmsformat.cpp.o
[ 65%] Linking CXX shared module ../../lib/msmsformat.so
[ 65%] Built target msmsformat
[ 65%] Building CXX object src/formats/CMakeFiles/opendxformat.dir/opendxformat.cpp.o
[ 65%] Linking CXX shared module ../../lib/opendxformat.so
[ 65%] Built target opendxformat
[ 66%] Building CXX object src/formats/CMakeFiles/outformat.dir/outformat.cpp.o
[ 66%] Linking CXX shared module ../../lib/outformat.so
[ 66%] Built target outformat
[ 67%] Building CXX object src/formats/CMakeFiles/pcmodelformat.dir/pcmodelformat.cpp.o
[ 67%] Linking CXX shared module ../../lib/pcmodelformat.so
[ 67%] Built target pcmodelformat
[ 67%] Building CXX object src/formats/CMakeFiles/pdbqtformat.dir/pdbqtformat.cpp.o
/home/shallinan/gnina/build/openbabel/src/formats/pdbqtformat.cpp: In function ‘void OpenBabel::OutputAtom(OpenBabel::OBAtom*, std::ostream&, unsigned int)’:
/home/shallinan/gnina/build/openbabel/src/formats/pdbqtformat.cpp:345:52: warning: ‘__builtin___snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=]
345 |       snprintf(type_name, sizeof(type_name), " %-3s", tmp);
|                                                    ^
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/ext/string_conversions.h:43,
from /usr/include/c++/9/bits/basic_string.h:6493,
from /usr/include/c++/9/string:55,
from /usr/include/c++/9/bits/locale_classes.h:40,
from /usr/include/c++/9/bits/ios_base.h:41,
from /usr/include/c++/9/ios:42,
from /usr/include/c++/9/ostream:38,
from /usr/include/c++/9/iostream:39,
from /home/shallinan/gnina/build/openbabel/include/openbabel/obconversion.h:24,
from /home/shallinan/gnina/build/openbabel/include/openbabel/obmolecformat.h:36,
from /home/shallinan/gnina/build/openbabel/src/formats/pdbqtformat.cpp:24:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 5 and 11 bytes into a destination of size 10
67 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
|          ~^~~~~~~~~~~
68 |        __bos (__s), __fmt, __va_arg_pack ());
|        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/shallinan/gnina/build/openbabel/src/formats/pdbqtformat.cpp:363:60: warning: ‘__builtin___snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=]
363 |           snprintf(padded_name, sizeof(padded_name), " %-3s", tmp);
|                                                            ^
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/ext/string_conversions.h:43,
from /usr/include/c++/9/bits/basic_string.h:6493,
from /usr/include/c++/9/string:55,
from /usr/include/c++/9/bits/locale_classes.h:40,
from /usr/include/c++/9/bits/ios_base.h:41,
from /usr/include/c++/9/ios:42,
from /usr/include/c++/9/ostream:38,
from /usr/include/c++/9/iostream:39,
from /home/shallinan/gnina/build/openbabel/include/openbabel/obconversion.h:24,
from /home/shallinan/gnina/build/openbabel/include/openbabel/obmolecformat.h:36,
from /home/shallinan/gnina/build/openbabel/src/formats/pdbqtformat.cpp:24:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 5 and 11 bytes into a destination of size 10
67 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
|          ~^~~~~~~~~~~
68 |        __bos (__s), __fmt, __va_arg_pack ());
|        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 68%] Linking CXX shared module ../../lib/pdbqtformat.so
[ 68%] Built target pdbqtformat
[ 68%] Building CXX object src/formats/CMakeFiles/pointcloudformat.dir/pointcloudformat.cpp.o
[ 68%] Linking CXX shared module ../../lib/pointcloudformat.so
[ 68%] Built target pointcloudformat
[ 69%] Building CXX object src/formats/CMakeFiles/posformat.dir/posformat.cpp.o
[ 69%] Linking CXX shared module ../../lib/posformat.so
[ 69%] Built target posformat
[ 69%] Building CXX object src/formats/CMakeFiles/pqrformat.dir/pqrformat.cpp.o
/home/shallinan/gnina/build/openbabel/src/formats/pqrformat.cpp: In member function ‘virtual bool OpenBabel::PQRFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’:
/home/shallinan/gnina/build/openbabel/src/formats/pqrformat.cpp:511:58: warning: ‘__builtin___snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=]
511 |             snprintf(type_name, sizeof(type_name), " %-3s", tmp);
|                                                          ^
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/ext/string_conversions.h:43,
from /usr/include/c++/9/bits/basic_string.h:6493,
from /usr/include/c++/9/string:55,
from /usr/include/c++/9/bits/locale_classes.h:40,
from /usr/include/c++/9/bits/ios_base.h:41,
from /usr/include/c++/9/ios:42,
from /usr/include/c++/9/ostream:38,
from /usr/include/c++/9/iostream:39,
from /home/shallinan/gnina/build/openbabel/include/openbabel/obconversion.h:24,
from /home/shallinan/gnina/build/openbabel/include/openbabel/obmolecformat.h:36,
from /home/shallinan/gnina/build/openbabel/src/formats/pqrformat.cpp:16:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 5 and 11 bytes into a destination of size 10
67 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
|          ~^~~~~~~~~~~
68 |        __bos (__s), __fmt, __va_arg_pack ());
|        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/shallinan/gnina/build/openbabel/src/formats/pqrformat.cpp:528:66: warning: ‘%-3s’ directive output may be truncated writing between 3 and 15 bytes into a region of size 9 [-Wformat-truncation=]
528 |                     snprintf(padded_name, sizeof(padded_name), " %-3s", tmp);
|                                                                  ^~~~   ~~~
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/ext/string_conversions.h:43,
from /usr/include/c++/9/bits/basic_string.h:6493,
from /usr/include/c++/9/string:55,
from /usr/include/c++/9/bits/locale_classes.h:40,
from /usr/include/c++/9/bits/ios_base.h:41,
from /usr/include/c++/9/ios:42,
from /usr/include/c++/9/ostream:38,
from /usr/include/c++/9/iostream:39,
from /home/shallinan/gnina/build/openbabel/include/openbabel/obconversion.h:24,
from /home/shallinan/gnina/build/openbabel/include/openbabel/obmolecformat.h:36,
from /home/shallinan/gnina/build/openbabel/src/formats/pqrformat.cpp:16:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 5 and 17 bytes into a destination of size 10
67 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
|          ~^~~~~~~~~~~
68 |        __bos (__s), __fmt, __va_arg_pack ());
|        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 70%] Linking CXX shared module ../../lib/pqrformat.so
[ 70%] Built target pqrformat
[ 70%] Building CXX object src/formats/CMakeFiles/shelxformat.dir/shelxformat.cpp.o
[ 70%] Linking CXX shared module ../../lib/shelxformat.so
[ 70%] Built target shelxformat
[ 70%] Building CXX object src/formats/CMakeFiles/smileyformat.dir/smileyformat.cpp.o
[ 70%] Linking CXX shared module ../../lib/smileyformat.so
[ 70%] Built target smileyformat
[ 71%] Building CXX object src/formats/CMakeFiles/stlformat.dir/stlformat.cpp.o
[ 71%] Linking CXX shared module ../../lib/stlformat.so
[ 71%] Built target stlformat
[ 71%] Building CXX object src/formats/CMakeFiles/thermoformat.dir/thermoformat.cpp.o
[ 71%] Linking CXX shared module ../../lib/thermoformat.so
[ 71%] Built target thermoformat
[ 71%] Building CXX object src/formats/CMakeFiles/tinkerformat.dir/tinkerformat.cpp.o
[ 72%] Linking CXX shared module ../../lib/tinkerformat.so
[ 72%] Built target tinkerformat
[ 73%] Building CXX object src/formats/CMakeFiles/unichemformat.dir/unichemformat.cpp.o
[ 73%] Linking CXX shared module ../../lib/unichemformat.so
[ 73%] Built target unichemformat
[ 73%] Building CXX object src/formats/CMakeFiles/viewmolformat.dir/viewmolformat.cpp.o
[ 74%] Linking CXX shared module ../../lib/viewmolformat.so
[ 74%] Built target viewmolformat
[ 74%] Building CXX object src/formats/CMakeFiles/wlnformat.dir/wlnformat.cpp.o
[ 74%] Building CXX object src/formats/CMakeFiles/wlnformat.dir/wln-nextmove.cpp.o
[ 74%] Linking CXX shared module ../../lib/wlnformat.so
[ 74%] Built target wlnformat
[ 74%] Building CXX object src/formats/CMakeFiles/xedformat.dir/xedformat.cpp.o
[ 75%] Linking CXX shared module ../../lib/xedformat.so
[ 75%] Built target xedformat
[ 76%] Building CXX object src/formats/CMakeFiles/xyzformat.dir/xyzformat.cpp.o
[ 76%] Linking CXX shared module ../../lib/xyzformat.so
[ 76%] Built target xyzformat
[ 76%] Building CXX object src/formats/CMakeFiles/yasaraformat.dir/yasaraformat.cpp.o
/home/shallinan/gnina/build/openbabel/src/formats/yasaraformat.cpp: In member function ‘virtual bool OpenBabel::YOBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’:
/home/shallinan/gnina/build/openbabel/src/formats/yasaraformat.cpp:572:36: warning: ‘__builtin___snprintf_chk’ output truncated before the last format character [-Wformat-truncation=]
572 |       snprintf(&buffer[12], 4, "%4d",res->GetNum()); }
|                                    ^
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/ext/string_conversions.h:43,
from /usr/include/c++/9/bits/basic_string.h:6493,
from /usr/include/c++/9/string:55,
from /usr/include/c++/9/bits/locale_classes.h:40,
from /usr/include/c++/9/bits/ios_base.h:41,
from /usr/include/c++/9/ios:42,
from /usr/include/c++/9/ostream:38,
from /usr/include/c++/9/iostream:39,
from /home/shallinan/gnina/build/openbabel/include/openbabel/obconversion.h:24,
from /home/shallinan/gnina/build/openbabel/include/openbabel/obmolecformat.h:36,
from /home/shallinan/gnina/build/openbabel/src/formats/yasaraformat.cpp:34:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 5 and 12 bytes into a destination of size 4
67 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
|          ~^~~~~~~~~~~
68 |        __bos (__s), __fmt, va_arg_pack ());
|        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 76%] Linking CXX shared module ../../lib/yasaraformat.so
[ 76%] Built target yasaraformat
[ 77%] Building CXX object src/formats/CMakeFiles/rxnformat.dir/rxnformat.cpp.o
[ 77%] Linking CXX shared module ../../lib/rxnformat.so
[ 77%] Built target rxnformat
[ 77%] Building CXX object src/formats/CMakeFiles/chemdrawcdx.dir/chemdrawcdx.cpp.o
[ 77%] Linking CXX shared module ../../lib/chemdrawcdx.so
[ 77%] Built target chemdrawcdx
[ 78%] Building CXX object src/formats/CMakeFiles/chemkinformat.dir/chemkinformat.cpp.o
[ 78%] Linking CXX shared module ../../lib/chemkinformat.so
[ 78%] Built target chemkinformat
[ 78%] Building CXX object src/formats/CMakeFiles/rinchiformat.dir/rinchiformat.cpp.o
[ 79%] Linking CXX shared module ../../lib/rinchiformat.so
[ 79%] Built target rinchiformat
[ 79%] Building CXX object src/formats/CMakeFiles/rsmiformat.dir/rsmiformat.cpp.o
[ 79%] Linking CXX shared module ../../lib/rsmiformat.so
[ 79%] Built target rsmiformat
[ 79%] Building CXX object src/formats/CMakeFiles/xtcformat.dir/xtcformat.cpp.o
[ 79%] Linking CXX shared module ../../lib/xtcformat.so
[ 79%] Built target xtcformat
[ 80%] Building CXX object src/formats/CMakeFiles/chemdoodlejsonformat.dir/json/chemdoodlejsonformat.cpp.o
[ 80%] Linking CXX shared module ../../lib/chemdoodlejsonformat.so
[ 80%] Built target chemdoodlejsonformat
[ 80%] Building CXX object src/formats/CMakeFiles/pubchemjsonformat.dir/json/pubchemjsonformat.cpp.o
[ 80%] Linking CXX shared module ../../lib/pubchemjsonformat.so
[ 80%] Built target pubchemjsonformat
[ 80%] Building CXX object tools/CMakeFiles/obabel.dir/obabel.cpp.o
[ 80%] Linking CXX executable ../bin/obabel
[ 80%] Built target obabel
[ 80%] Building CXX object tools/CMakeFiles/obconformer.dir/obconformer.cpp.o
[ 81%] Linking CXX executable ../bin/obconformer
[ 81%] Built target obconformer
[ 81%] Building CXX object tools/CMakeFiles/obenergy.dir/obenergy.cpp.o
[ 81%] Linking CXX executable ../bin/obenergy
[ 81%] Built target obenergy
[ 82%] Building CXX object tools/CMakeFiles/obfit.dir/obfit.cpp.o
[ 82%] Linking CXX executable ../bin/obfit
[ 82%] Built target obfit
[ 82%] Building CXX object tools/CMakeFiles/obfitall.dir/obfitall.cpp.o
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[ 82%] Building CXX object tools/CMakeFiles/obgen.dir/obgen.cpp.o
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[ 83%] Built target obgen
[ 83%] Building CXX object tools/CMakeFiles/obminimize.dir/obminimize.cpp.o
[ 83%] Linking CXX executable ../bin/obminimize
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[ 84%] Building CXX object tools/CMakeFiles/obmm.dir/obmm.cpp.o
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[ 84%] Building CXX object tools/CMakeFiles/obprobe.dir/obprobe.cpp.o
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[ 86%] Building CXX object tools/CMakeFiles/obrotate.dir/obrotate.cpp.o
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[ 86%] Building CXX object tools/CMakeFiles/obsym.dir/obsym.cpp.o
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[ 87%] Building CXX object tools/CMakeFiles/obtautomer.dir/obtautomer.cpp.o
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[ 87%] Building CXX object tools/CMakeFiles/obthermo.dir/obthermo.cpp.o
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[ 87%] Building CXX object tools/CMakeFiles/obdistgen.dir/obdistgen.cpp.o
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[ 87%] Building CXX object tools/CMakeFiles/obgrep.dir/obgrep.cpp.o
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[ 87%] Building CXX object tools/CMakeFiles/obspectrophore.dir/obspectrophore.cpp.o
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[ 99%] Building CXX object test/CMakeFiles/test_runner.dir/unitcell.cpp.o
[ 99%] Building CXX object test/CMakeFiles/test_runner.dir/obtest.cpp.o
[ 99%] Linking CXX executable ../bin/test_runner
[ 99%] Built target test_runner
[ 99%] Building CXX object test/CMakeFiles/test_inchiwrite.dir/inchiwrite.cpp.o
[100%] Building CXX object test/CMakeFiles/test_inchiwrite.dir//src/formats/getinchi.cpp.o
[100%] Linking CXX executable ../bin/test_inchiwrite
[100%] Built target test_inchiwrite
[100%] Building CXX object test/CMakeFiles/roundtrip.dir/roundtrip.cpp.o
[100%] Linking CXX executable ../bin/roundtrip
[100%] Built target roundtrip
shallinan@DESKTOP-8D3HC57:~/gnina/build/openbabel/build$ make install
Consolidate compiler generated dependencies of target openbabel
[ 15%] Built target openbabel
Consolidate compiler generated dependencies of target plugin_descriptors
[ 17%] Built target plugin_descriptors
Consolidate compiler generated dependencies of target plugin_fingerprints
[ 17%] Built target plugin_fingerprints
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[ 18%] Built target plugin_forcefields
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[ 24%] Built target plugin_ops
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[ 25%] Built target plugin_charges
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[ 33%] Built target inchi
Consolidate compiler generated dependencies of target smilesformat
[ 33%] Built target smilesformat
Consolidate compiler generated dependencies of target mdlformat
[ 34%] Built target mdlformat
Consolidate compiler generated dependencies of target mol2format
[ 34%] Built target mol2format
Consolidate compiler generated dependencies of target pdbformat
[ 34%] Built target pdbformat
Consolidate compiler generated dependencies of target inchiformat
[ 35%] Built target inchiformat
Consolidate compiler generated dependencies of target asciiformat
[ 36%] Built target asciiformat
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[ 37%] Built target copyformat
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[ 37%] Built target MNAformat
Consolidate compiler generated dependencies of target molreport
[ 37%] Built target molreport
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[ 37%] Built target nulformat
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[ 37%] Built target painterformat
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[ 37%] Built target povrayformat
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[ 37%] Built target reportformat
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[ 37%] Built target svgformat
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[ 38%] Built target textformat
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[ 38%] Built target titleformat
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[ 38%] Built target pngformat
Consolidate compiler generated dependencies of target acesformat
[ 38%] Built target acesformat
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[ 39%] Built target abinitformat
Consolidate compiler generated dependencies of target adfformat
[ 39%] Built target adfformat
Consolidate compiler generated dependencies of target aoforceformat
[ 39%] Built target aoforceformat
Consolidate compiler generated dependencies of target castepformat
[ 40%] Built target castepformat
Consolidate compiler generated dependencies of target crystal09format
[ 41%] Built target crystal09format
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[ 41%] Built target daltonformat
Consolidate compiler generated dependencies of target dmolformat
[ 41%] Built target dmolformat
Consolidate compiler generated dependencies of target fchkformat
[ 42%] Built target fchkformat
Consolidate compiler generated dependencies of target fhiaimsformat
[ 42%] Built target fhiaimsformat
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[ 42%] Built target gamessformat
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[ 43%] Built target gausscubeformat
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[ 43%] Built target gausszmatformat
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[ 44%] Built target hinformat
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[ 49%] Built target vaspformat
Consolidate compiler generated dependencies of target xsfformat
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Consolidate compiler generated dependencies of target zindoformat
[ 50%] Built target zindoformat
Consolidate compiler generated dependencies of target gamessukformat
[ 51%] Built target gamessukformat
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[ 51%] Built target orcaformat
Consolidate compiler generated dependencies of target APIInterface
[ 51%] Built target APIInterface
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[ 51%] Built target CSRformat
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[ 51%] Built target PQSformat
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[ 52%] Built target MCDLformat
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[ 53%] Built target acrformat
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[ 54%] Built target amberformat
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[ 54%] Built target balstformat
Consolidate compiler generated dependencies of target bgfformat
[ 55%] Built target bgfformat
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[ 55%] Built target boxformat
Consolidate compiler generated dependencies of target cacaoformat
[ 55%] Built target cacaoformat
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[ 56%] Built target cacheformat
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[ 56%] Built target carformat
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Consolidate compiler generated dependencies of target chem3dformat
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[ 56%] Built target chemtoolformat
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[ 57%] Built target crkformat
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[ 61%] Built target gromos96format
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[ 62%] Built target groformat
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[ 63%] Built target lmpdatformat
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[ 63%] Built target lpmdformat
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[ 63%] Built target mdffformat
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[ 63%] Built target mmcifformat
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[ 64%] Built target mmodformat
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[ 64%] Built target moldenformat
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[ 64%] Built target mpdformat
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[ 64%] Built target mpqcformat
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[ 65%] Built target msiformat
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[ 65%] Built target msmsformat
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[ 66%] Built target outformat
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[ 69%] Built target posformat
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[ 70%] Built target smileyformat
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[ 72%] Built target tinkerformat
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[ 74%] Built target viewmolformat
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[ 80%] Built target chemdoodlejsonformat
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[ 80%] Built target pubchemjsonformat
Consolidate compiler generated dependencies of target obabel
[ 80%] Built target obabel
Consolidate compiler generated dependencies of target obconformer
[ 81%] Built target obconformer
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[ 81%] Built target obenergy
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[ 82%] Built target obfit
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[ 82%] Built target obfitall
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[ 83%] Built target obgen
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[ 83%] Built target obminimize
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[ 84%] Built target obmm
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[ 84%] Built target obprobe
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[ 85%] Built target obprop
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[ 87%] Built target obdistgen
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[ 87%] Built target obgrep
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[ 99%] Built target test_runner
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[100%] Built target test_inchiwrite
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[100%] Built target roundtrip
Install the project...
-- Install configuration: "Release"
CMake Error at cmake_install.cmake:46 (file):
file cannot create directory: /usr/local/include/openbabel3/openbabel.
Maybe need administrative privileges.
make: *** [Makefile:110: install] Error 1
shallinan@DESKTOP-8D3HC57:~/gnina/build/openbabel/build$ sudo make install
[ 15%] Built target openbabel
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[ 17%] Built target plugin_fingerprints
[ 18%] Built target plugin_forcefields
[ 24%] Built target plugin_ops
[ 25%] Built target plugin_charges
[ 33%] Built target inchi
[ 33%] Built target smilesformat
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[ 34%] Built target pdbformat
[ 35%] Built target inchiformat
[ 36%] Built target asciiformat
[ 37%] Built target copyformat
[ 37%] Built target MNAformat
[ 37%] Built target molreport
[ 37%] Built target nulformat
[ 37%] Built target painterformat
[ 37%] Built target povrayformat
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[ 38%] Built target textformat
[ 38%] Built target titleformat
[ 38%] Built target confabreport
[ 38%] Built target pngformat
[ 38%] Built target acesformat
[ 39%] Built target abinitformat
[ 39%] Built target adfformat
[ 39%] Built target aoforceformat
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[ 41%] Built target crystal09format
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[ 42%] Built target fchkformat
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[ 51%] Built target APIInterface
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[ 51%] Built target PQSformat
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[ 52%] Built target alchemyformat
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[ 55%] Built target boxformat
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[ 58%] Built target dlpolyformat
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[ 60%] Built target fhformat
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[ 63%] Built target mmcifformat
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[ 68%] Built target pointcloudformat
[ 69%] Built target posformat
[ 70%] Built target pqrformat
[ 70%] Built target shelxformat
[ 70%] Built target smileyformat
[ 71%] Built target stlformat
[ 71%] Built target thermoformat
[ 72%] Built target tinkerformat
[ 73%] Built target unichemformat
[ 74%] Built target viewmolformat
[ 74%] Built target wlnformat
[ 75%] Built target xedformat
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[ 76%] Built target yasaraformat
[ 77%] Built target rxnformat
[ 77%] Built target chemdrawcdx
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[ 79%] Built target rinchiformat
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[ 79%] Built target xtcformat
[ 80%] Built target chemdoodlejsonformat
[ 80%] Built target pubchemjsonformat
[ 80%] Built target obabel
[ 81%] Built target obconformer
[ 81%] Built target obenergy
[ 82%] Built target obfit
[ 82%] Built target obfitall
[ 83%] Built target obgen
[ 83%] Built target obminimize
[ 84%] Built target obmm
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[100%] Built target roundtrip
Install the project...
-- Install configuration: "Release"
-- Installing: /usr/local/include/openbabel3/openbabel/babelconfig.h
-- Installing: /usr/local/lib/pkgconfig/openbabel-3.pc
-- Installing: /usr/local/lib/cmake/openbabel3/OpenBabel3_EXPORTS.cmake
-- Installing: /usr/local/lib/cmake/openbabel3/OpenBabel3_EXPORTS-release.cmake
-- Installing: /usr/local/lib/cmake/openbabel3/OpenBabel3Config.cmake
-- Installing: /usr/local/lib/cmake/openbabel3/OpenBabel3ConfigVersion.cmake
-- Installing: /usr/local/include/inchi/inchi_api.h
-- Installing: /usr/local/include/openbabel3/openbabel/chemdrawcdx.h
-- Installing: /usr/local/include/openbabel3/openbabel/alias.h
-- Installing: /usr/local/include/openbabel3/openbabel/atom.h
-- Installing: /usr/local/include/openbabel3/openbabel/base.h
-- Installing: /usr/local/include/openbabel3/openbabel/bitvec.h
-- Installing: /usr/local/include/openbabel3/openbabel/bond.h
-- Installing: /usr/local/include/openbabel3/openbabel/bondtyper.h
-- Installing: /usr/local/include/openbabel3/openbabel/builder.h
-- Installing: /usr/local/include/openbabel3/openbabel/canon.h
-- Installing: /usr/local/include/openbabel3/openbabel/chains.h
-- Installing: /usr/local/include/openbabel3/openbabel/chargemodel.h
-- Installing: /usr/local/include/openbabel3/openbabel/conformersearch.h
-- Installing: /usr/local/include/openbabel3/openbabel/data.h
-- Installing: /usr/local/include/openbabel3/openbabel/data_utilities.h
-- Installing: /usr/local/include/openbabel3/openbabel/descriptor.h
-- Installing: /usr/local/include/openbabel3/openbabel/distgeom.h
-- Installing: /usr/local/include/openbabel3/openbabel/dlhandler.h
-- Installing: /usr/local/include/openbabel3/openbabel/elements.h
-- Installing: /usr/local/include/openbabel3/openbabel/fingerprint.h
-- Installing: /usr/local/include/openbabel3/openbabel/forcefield.h
-- Installing: /usr/local/include/openbabel3/openbabel/format.h
-- Installing: /usr/local/include/openbabel3/openbabel/generic.h
-- Installing: /usr/local/include/openbabel3/openbabel/graphsym.h
-- Installing: /usr/local/include/openbabel3/openbabel/grid.h
-- Installing: /usr/local/include/openbabel3/openbabel/griddata.h
-- Installing: /usr/local/include/openbabel3/openbabel/groupcontrib.h
-- Installing: /usr/local/include/openbabel3/openbabel/inchiformat.h
-- Installing: /usr/local/include/openbabel3/openbabel/internalcoord.h
-- Installing: /usr/local/include/openbabel3/openbabel/isomorphism.h
-- Installing: /usr/local/include/openbabel3/openbabel/json.h
-- Installing: /usr/local/include/openbabel3/openbabel/kekulize.h
-- Installing: /usr/local/include/openbabel3/openbabel/kinetics.h
-- Installing: /usr/local/include/openbabel3/openbabel/lineend.h
-- Installing: /usr/local/include/openbabel3/openbabel/locale.h
-- Installing: /usr/local/include/openbabel3/openbabel/matrix.h
-- Installing: /usr/local/include/openbabel3/openbabel/mcdlutil.h
-- Installing: /usr/local/include/openbabel3/openbabel/mol.h
-- Installing: /usr/local/include/openbabel3/openbabel/molchrg.h
-- Installing: /usr/local/include/openbabel3/openbabel/obconversion.h
-- Installing: /usr/local/include/openbabel3/openbabel/oberror.h
-- Installing: /usr/local/include/openbabel3/openbabel/obfunctions.h
-- Installing: /usr/local/include/openbabel3/openbabel/obiter.h
-- Installing: /usr/local/include/openbabel3/openbabel/obmolecformat.h
-- Installing: /usr/local/include/openbabel3/openbabel/obutil.h
-- Installing: /usr/local/include/openbabel3/openbabel/op.h
-- Installing: /usr/local/include/openbabel3/openbabel/optransform.h
-- Installing: /usr/local/include/openbabel3/openbabel/parsmart.h
-- Installing: /usr/local/include/openbabel3/openbabel/patty.h
-- Installing: /usr/local/include/openbabel3/openbabel/phmodel.h
-- Installing: /usr/local/include/openbabel3/openbabel/plugin.h
-- Installing: /usr/local/include/openbabel3/openbabel/pointgroup.h
-- Installing: /usr/local/include/openbabel3/openbabel/query.h
-- Installing: /usr/local/include/openbabel3/openbabel/reaction.h
-- Installing: /usr/local/include/openbabel3/openbabel/reactionfacade.h
-- Installing: /usr/local/include/openbabel3/openbabel/residue.h
-- Installing: /usr/local/include/openbabel3/openbabel/ring.h
-- Installing: /usr/local/include/openbabel3/openbabel/rotamer.h
-- Installing: /usr/local/include/openbabel3/openbabel/rotor.h
-- Installing: /usr/local/include/openbabel3/openbabel/shared_ptr.h
-- Installing: /usr/local/include/openbabel3/openbabel/spectrophore.h
-- Installing: /usr/local/include/openbabel3/openbabel/tautomer.h
-- Installing: /usr/local/include/openbabel3/openbabel/text.h
-- Installing: /usr/local/include/openbabel3/openbabel/tokenst.h
-- Installing: /usr/local/include/openbabel3/openbabel/typer.h
-- Installing: /usr/local/include/openbabel3/openbabel/xml.h
-- Installing: /usr/local/include/openbabel3/openbabel/math/align.h
-- Installing: /usr/local/include/openbabel3/openbabel/math/erf.h
-- Installing: /usr/local/include/openbabel3/openbabel/math/matrix3x3.h
-- Installing: /usr/local/include/openbabel3/openbabel/math/spacegroup.h
-- Installing: /usr/local/include/openbabel3/openbabel/math/transform3d.h
-- Installing: /usr/local/include/openbabel3/openbabel/math/vector3.h
-- Installing: /usr/local/include/openbabel3/openbabel/stereo/bindings.h
-- Installing: /usr/local/include/openbabel3/openbabel/stereo/cistrans.h
-- Installing: /usr/local/include/openbabel3/openbabel/stereo/squareplanar.h
-- Installing: /usr/local/include/openbabel3/openbabel/stereo/stereo.h
-- Installing: /usr/local/include/openbabel3/openbabel/stereo/tetrahedral.h
-- Installing: /usr/local/include/openbabel3/openbabel/stereo/tetranonplanar.h
-- Installing: /usr/local/include/openbabel3/openbabel/stereo/tetraplanar.h
-- Installing: /usr/local/include/openbabel3/openbabel/depict/asciipainter.h
-- Installing: /usr/local/include/openbabel3/openbabel/depict/cairopainter.h
-- Installing: /usr/local/include/openbabel3/openbabel/depict/commandpainter.h
-- Installing: /usr/local/include/openbabel3/openbabel/depict/depict.h
-- Installing: /usr/local/include/openbabel3/openbabel/depict/painter.h
-- Installing: /usr/local/include/openbabel3/openbabel/depict/svgpainter.h
-- Installing: /usr/local/include/openbabel3/LBFGS.h
-- Installing: /usr/local/include/openbabel3/LBFGS/LineSearchBacktracking.h
-- Installing: /usr/local/include/openbabel3/LBFGS/LineSearchBracketing.h
-- Installing: /usr/local/include/openbabel3/LBFGS/LineSearchNocedalWright.h
-- Installing: /usr/local/include/openbabel3/LBFGS/Param.h
-- Installing: /usr/local/share/openbabel/3.1.0/atomization-energies.txt
-- Installing: /usr/local/share/openbabel/3.1.0/atomtyp.txt
-- Installing: /usr/local/share/openbabel/3.1.0/babel_povray3.inc
-- Installing: /usr/local/share/openbabel/3.1.0/bondtyp.txt
-- Installing: /usr/local/share/openbabel/3.1.0/eem.txt
-- Installing: /usr/local/share/openbabel/3.1.0/eem2015ba.txt
-- Installing: /usr/local/share/openbabel/3.1.0/eem2015bm.txt
-- Installing: /usr/local/share/openbabel/3.1.0/eem2015bn.txt
-- Installing: /usr/local/share/openbabel/3.1.0/eem2015ha.txt
-- Installing: /usr/local/share/openbabel/3.1.0/eem2015hm.txt
-- Installing: /usr/local/share/openbabel/3.1.0/eem2015hn.txt
-- Installing: /usr/local/share/openbabel/3.1.0/eqeqIonizations.txt
-- Installing: /usr/local/share/openbabel/3.1.0/gaff.dat
-- Installing: /usr/local/share/openbabel/3.1.0/gaff.prm
-- Installing: /usr/local/share/openbabel/3.1.0/ghemical.prm
-- Installing: /usr/local/share/openbabel/3.1.0/logp.txt
-- Installing: /usr/local/share/openbabel/3.1.0/MACCS.txt
-- Installing: /usr/local/share/openbabel/3.1.0/mmff94.ff
-- Installing: /usr/local/share/openbabel/3.1.0/mmff94s.ff
-- Installing: /usr/local/share/openbabel/3.1.0/mmffang.par
-- Installing: /usr/local/share/openbabel/3.1.0/mmffbndk.par
-- Installing: /usr/local/share/openbabel/3.1.0/mmffbond.par
-- Installing: /usr/local/share/openbabel/3.1.0/mmffchg.par
-- Installing: /usr/local/share/openbabel/3.1.0/mmffdef.par
-- Installing: /usr/local/share/openbabel/3.1.0/mmffdfsb.par
-- Installing: /usr/local/share/openbabel/3.1.0/mmffoop.par
-- Installing: /usr/local/share/openbabel/3.1.0/mmffpbci.par
-- Installing: /usr/local/share/openbabel/3.1.0/mmffprop.par
-- Installing: /usr/local/share/openbabel/3.1.0/mmffstbn.par
-- Installing: /usr/local/share/openbabel/3.1.0/mmfftor.par
-- Installing: /usr/local/share/openbabel/3.1.0/mmffvdw.par
-- Installing: /usr/local/share/openbabel/3.1.0/mmffs_oop.par
-- Installing: /usr/local/share/openbabel/3.1.0/mmffs_tor.par
-- Installing: /usr/local/share/openbabel/3.1.0/mpC.txt
-- Installing: /usr/local/share/openbabel/3.1.0/mr.txt
-- Installing: /usr/local/share/openbabel/3.1.0/patterns.txt
-- Installing: /usr/local/share/openbabel/3.1.0/phmodel.txt
-- Installing: /usr/local/share/openbabel/3.1.0/plugindefines.txt
-- Installing: /usr/local/share/openbabel/3.1.0/psa.txt
-- Installing: /usr/local/share/openbabel/3.1.0/qeq.txt
-- Installing: /usr/local/share/openbabel/3.1.0/resdata.txt
-- Installing: /usr/local/share/openbabel/3.1.0/rigid-fragments.txt
-- Installing: /usr/local/share/openbabel/3.1.0/rigid-fragments-index.txt
-- Installing: /usr/local/share/openbabel/3.1.0/ring-fragments.txt
-- Installing: /usr/local/share/openbabel/3.1.0/ringtyp.txt
-- Installing: /usr/local/share/openbabel/3.1.0/SMARTS_InteLigand.txt
-- Installing: /usr/local/share/openbabel/3.1.0/space-groups.txt
-- Installing: /usr/local/share/openbabel/3.1.0/superatom.txt
-- Installing: /usr/local/share/openbabel/3.1.0/svgformat.script
-- Installing: /usr/local/share/openbabel/3.1.0/templates.sdf
-- Installing: /usr/local/share/openbabel/3.1.0/torlib.txt
-- Installing: /usr/local/share/openbabel/3.1.0/torsion.txt
-- Installing: /usr/local/share/openbabel/3.1.0/types.txt
-- Installing: /usr/local/share/openbabel/3.1.0/UFF.prm
-- Installing: /usr/local/share/man/man1/obabel.1
-- Installing: /usr/local/share/man/man1/obchiral.1
-- Installing: /usr/local/share/man/man1/obconformer.1
-- Installing: /usr/local/share/man/man1/obdistgen.1
-- Installing: /usr/local/share/man/man1/obenergy.1
-- Installing: /usr/local/share/man/man1/obfit.1
-- Installing: /usr/local/share/man/man1/obgen.1
-- Installing: /usr/local/share/man/man1/obgrep.1
-- Installing: /usr/local/share/man/man1/obgui.1
-- Installing: /usr/local/share/man/man1/obminimize.1
-- Installing: /usr/local/share/man/man1/obprobe.1
-- Installing: /usr/local/share/man/man1/obprop.1
-- Installing: /usr/local/share/man/man1/obrms.1
-- Installing: /usr/local/share/man/man1/obrotamer.1
-- Installing: /usr/local/share/man/man1/obrotate.1
-- Installing: /usr/local/share/man/man1/obspectrophore.1
-- Installing: /usr/local/share/man/man1/obsym.1
-- Installing: /usr/local/share/man/man1/obtautomer.1
-- Installing: /usr/local/share/man/man1/obthermo.1
-- Installing: /usr/local/share/man/man1/roundtrip.1
-- Installing: /usr/local/share/openbabel/3.1.0/splash.png
-- Installing: /usr/local/lib/libopenbabel.so.7.0.0
-- Installing: /usr/local/lib/libopenbabel.so.7
-- Set runtime path of "/usr/local/lib/libopenbabel.so.7.0.0" to "/usr/local/lib"
-- Installing: /usr/local/lib/libopenbabel.so
-- Installing: /usr/local/lib/openbabel/3.1.0/plugin_descriptors.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/plugin_descriptors.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/plugin_fingerprints.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/plugin_fingerprints.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/plugin_forcefields.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/plugin_forcefields.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/plugin_ops.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/plugin_ops.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/plugin_charges.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/plugin_charges.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/smilesformat.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/smilesformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/mdlformat.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/mdlformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/mol2format.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/mol2format.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/pdbformat.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/pdbformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/inchiformat.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/inchiformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/asciiformat.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/asciiformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/copyformat.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/copyformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/MNAformat.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/MNAformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/molreport.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/molreport.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/nulformat.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/nulformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/painterformat.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/painterformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/povrayformat.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/povrayformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/reportformat.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/reportformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/svgformat.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/svgformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/textformat.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/textformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/titleformat.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/titleformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/confabreport.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/confabreport.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/pngformat.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/pngformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/acesformat.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/acesformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/abinitformat.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/abinitformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/adfformat.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/adfformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/aoforceformat.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/aoforceformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/castepformat.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/castepformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/crystal09format.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/crystal09format.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/daltonformat.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/daltonformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/dmolformat.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/dmolformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/fchkformat.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/fchkformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/fhiaimsformat.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/fhiaimsformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/gamessformat.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/gamessformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/gaussformat.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/gaussformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/gausscubeformat.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/gausscubeformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/gausszmatformat.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/gausszmatformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/gulpformat.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/gulpformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/hinformat.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/hinformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/jaguarformat.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/jaguarformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/molproformat.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/molproformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/mopacformat.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/mopacformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/nwchemformat.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/nwchemformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/pwscfformat.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/pwscfformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/qchemformat.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/qchemformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/siestaformat.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/siestaformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/turbomoleformat.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/turbomoleformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/vaspformat.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/vaspformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/xsfformat.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/xsfformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/zindoformat.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/zindoformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/gamessukformat.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/gamessukformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/orcaformat.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/orcaformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/APIInterface.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/APIInterface.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/CSRformat.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/CSRformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/PQSformat.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/PQSformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/MCDLformat.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/MCDLformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/alchemyformat.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/alchemyformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/acrformat.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/acrformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/amberformat.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/amberformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/balstformat.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/balstformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/bgfformat.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/bgfformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/boxformat.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/boxformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/cacaoformat.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/cacaoformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/cacheformat.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/cacheformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/carformat.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/carformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/cccformat.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/cccformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/chem3dformat.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/chem3dformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/chemdrawct.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/chemdrawct.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/chemtoolformat.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/chemtoolformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/cifformat.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/cifformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/cofformat.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/cofformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/crkformat.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/crkformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/cssrformat.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/cssrformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/dlpolyformat.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/dlpolyformat.so" to "/usr/local/lib"
-- Installing: /usr/local/lib/openbabel/3.1.0/exyzformat.so
-- Set runtime path of "/usr/local/lib/openbabel/3.1.0/exyzformat.so" to "/usr/local/lib"