About the trained models and ROC curve

Dear authors,
We are recently working on your paper and the released code, and we have the following two issues that we hope you could help us to manage them:

training the models for all the protein sequences from scratch is quite time-consuming, we are thus wondering if there are trained models of all the protein sequences along with the released code?
you evaluated AUC and ROC in your paper, however, it seems there is no corresponding code in the released one, could you please provide the code?

Many thanks.

Dear Wei,
Apologies about the delayed response. Regarding your two questions:

We have made available all scores for the proteins we have trained models for at: https://evemodel.org/. You may also download from that website the MSAs we used to train the different models with the training script in the repo (latest version available at: https://github.com/OATML-Markslab/EVE).
Whenever we mention AUC in the paper, we always mean Area Under the Receiver Operating Characteristic. We use the default implementation from sklearn.metrics. See for example the performance_helpers.py script under utils (https://github.com/OATML-Markslab/EVE/blob/master/utils/performance_helpers.py#L42).
Kind regards,
Pascal

Closing the issue now but feel free to re-open if needed.


[suggestion] AdBlock/Hosts lists.

https://github.com/eladkarako/hosts

https://raw.githubusercontent.com/eladkarako/hosts/master/build/hosts0.txt

https://raw.githubusercontent.com/eladkarako/hosts/master/build/hosts0_with_localhost.txt

---------------------------------------------------------------------------------------------------

https://raw.githubusercontent.com/eladkarako/hosts/master/build/hosts_adblock.txt

https://raw.githubusercontent.com/eladkarako/hosts/master/build/hosts_adblock_anti_annoyances_hide.txt

https://raw.githubusercontent.com/eladkarako/hosts/master/build/hosts_adblock_anti_annoyances_block.txt

https://raw.githubusercontent.com/eladkarako/hosts/master/build/hosts_adblock_anti_annoyances_block_inline_script.txt

https://raw.githubusercontent.com/eladkarako/hosts/master/build/hosts_adblock_anti_annoyances_style_inject.txt

Thanks for this suggestion.
I'm currently working on a project that offers a detailed tutorial and a consolidated, ordered and deduplicated hosts list for use in a DNS Sinkhole Server with an encrypted forwarder link.
Using this method should allow users to not use adblockers at all in browsers (a nice performance boost).
Or use them much more sparingly.
More development is needed on my end for this before I release it publicly. Any work will appear in my GitHub repos.


Option to resize JSON/Table div to take up more space and reduce map size

Be able to resize the JSON/Table part similar to http://jsfiddle.net/, currently you can hide it so the map takes the whole screen but I think it would be useful if one can resize or hide the map when working using the table option.
If you got a few columns is not so easy to navigate.

Closing stale issue


logger: remove use of desciption param

https://github.com/sourcegraph/sourcegraph/pull/57690

Just need to update the go.mod to point to the now merged change


Image not showing in 4.2.2.a

In section 4.2 in lab "Interfacing with Sensors", there is a line saying
<img src="img/AccelerometerDisplay.png" alt"AccelerometerDisplay diagram"/>
which indicates a missing image. A screenshot is shown below. Can anyone fix this?

Fixed!  Thanks for pointing it out.


Fix: SnippetsFilter CRD missing from crd.yaml

Proposed changes
Problem: The SnippetsFilter CRD is missing from the deploy/crd.yaml file.
Solution: Add the SnippetsFilter CRD to the kustomize file that is used to generate deploy/crd.yaml.
Checklist
Before creating a PR, run through this checklist and mark each as complete.

[x] I have read the CONTRIBUTING doc
[ ] I have added tests that prove my fix is effective or that my feature works
[x] I have checked that all unit tests pass after adding my changes
[ ] I have updated necessary documentation
[x] I have rebased my branch onto main
[ ] I will ensure my PR is targeting the main branch and pulling from my branch from my own fork

Release notes
If this PR introduces a change that affects users and needs to be mentioned in the release notes,
please add a brief note that summarizes the change.

NONE

This will need to be cherry-picked to the release branch


[Feat] IoC Filter for Severity and Confidence via Web UI

Why
It is uncomfortable and not always possible that the Splunk user can change the severity and confidence via shell on the server itself.
What
The min/max severity and confidence should be able to setup in the Web UI. This settings should only be available if the user activate additional settings.
How

[ ] ...

This is now supported in 2.0.0b1. Min/Max can be used as well as setting a particular value for severity and confidence.