code gets deletes automatically

Issue Type: Bug
I am havhcing two problems

nullnullnullnullnullnullnullnullnullnullnull gets added  to my code at the bottom of the page on it's own

bottom portion omy code gets deleted automatically

I cannot reproduce this error.
it happens after I save
VS Code version: Code 1.65.2 (c722ca6c7eed3d7987c0d5c3df5c45f6b15e77d1, 2022-03-10T14:33:55.248Z)
OS version: Windows_NT x64 10.0.19043
Restricted Mode: No

System Info

Item
Value

CPUs
Intel(R) Core(TM) i7-6700T CPU @ 2.80GHz (8 x 2808)

GPU Status
2d_canvas: enabledgpu_compositing: enabledmultiple_raster_threads: enabled_onoop_rasterization: enabledopengl: enabled_onrasterization: enabledskia_renderer: enabled_onvideo_decode: enabledvulkan: disabled_offwebgl: enabledwebgl2: enabled

Load (avg)
undefined

Memory (System)
7.90GB (1.31GB free)

Process Argv
--crash-reporter-id f66a5b93-3f73-403d-b88b-1eb853576610

Screen Reader
no

VM
0%

Extensions (10)

Extension
Author (truncated)
Version

vscode-sql-formatter
adp
1.4.4

aws-toolkit-vscode
ama
1.36.0

atlascode
atl
2.10.9

es7-react-js-snippets
dsz
4.4.3

beautify
Hoo
1.5.0

python
ms-
2022.2.1924087327

vscode-pylance
ms-
2022.3.2

jupyter
ms-
2022.2.1030672458

vscode-xml
red
0.19.1

vscode-yaml
red
1.5.1

A/B Experiments
vsliv368:30146709
vsreu685:30147344
python383:30185418
vspor879:30202332
vspor708:30202333
vspor363:30204092
pythonvspyl392:30443607
pythontb:30283811
pythonptprofiler:30281270
vshan820:30294714
vstes263cf:30335440
pythondataviewer:30285071
vscod805cf:30301675
pythonvspyt200:30340761
binariesv615:30325510
bridge0708:30335490
bridge0723:30353136
vsaa593cf:30376535
vsc1dst:30438360
pythonvs932:30410667
wslgetstarted:30449410
vsclayoutctrt:30451275
dsvsc009:30452663
pythonvspyt640:30450904
vscscmwlcmt:30438805
vscgsvid2:30447481
pynewfile477cf:30450039

/needsMoreInfo
Is it reproducible with all extensions disabled?
You can try this with F1 and >Developer: Reload Window With Extensions Disabled

I followed the step above and was able to reproduce the issue.
[image: image.png]
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Your screenshot didn't make it through email, you need to upload it on the webpage.
This definitely sounds like something from a misbehaving extension, so please check that you can repro with them disabled.


// timeout expired comment is wrong?

The sample E4_SmsPhoneVerification orchestrator function has // timeout expired in else branch, but this branch should be reached when user put wrong challenge digit. It should be // wrong challenge code?

Document Details
⚠ Do not edit this section. It is required for docs.microsoft.com ➟ GitHub issue linking.

ID: 32f10048-0374-3561-c66d-6279708b1272
Version Independent ID: 64cbe0eb-0e05-2432-128f-9e738735f0ef
Content: Human interaction and timeouts in Durable Functions - Azure
Content Source: articles/azure-functions/durable/durable-functions-phone-verification.md
Service: azure-functions
GitHub Login: @ggailey777
Microsoft Alias: azfuncdf

@kenakamu Thank you for your feedback! We will review and update as appropriate.

@kenakamu Not really. The Task.WhenAny call returns the first task to finish and if it's not the challengeResponseTask, it's the timeoutTask.
If the code is incorrect, it just retries until the loop ends and would return false at the end.

ah okay, I misunderstood the code then. Thank for your reply it makes sense now :)


[Azure Cognitive Search] Creating new SDK version to match new management-plane API Version 2020-03-13

SDK version to point to swagger changes from this PR - Updated default tag to latest stable version. #9085.
Due to data-plane tests being dependent on the generated management-plane code, all session records were re-recorded. This PR contains no changes to generated data-plane SDK code. There is planned work to separate the dependency between data-plane tests and management-plane generated code.

Sorry, I rebased when I meant to merge in the recent changes to master. I will fix this quickly.


How to provide dictionary for ZSTD encoder/decoder?

ZSTD format works effectively when dict is provided:
https://github.com/klauspost/compress/blob/master/zstd/encoder_options.go#L31
see graphs: https://github.com/facebook/zstd#the-case-for-small-data-compression
I wonder how to provide dict value for Encoder/Decoder options defined here:
https://github.com/mholt/archiver/blob/master/zstd.go#L17-L18
Do I need to register own format? There is no option to update options for already registered formats?
I am currently using following snippet and wondering what I need to do to leverage fully ZSTD format by using dictionaries.
archiver.Archive([]string{sourceDir}, "myfile/tar.zst)

Any ideas?
Greetings, Krystian

Hi Krystian, thanks for the question!
I don't know much about this myself. But I learned something about it from the README of the compress package we use: https://pkg.go.dev/github.com/klauspost/compress/zstd#section-readme (see the "Dictionaries" heading)
As for configuring the Zstd format, you can get EOption and DOption values from the compress package: https://pkg.go.dev/github.com/klauspost/compress/zstd#pkg-index (see types EOption and DOption -- some are dictionary-related)
Hope that helps!

not really but ok ;) your lib is rather providing a facade that does not offer to customize format-specific options.
today I even struggled with another problem. I am instantiating TarZstd archiver intentionally but I want to output the file with the custom extension, let's say myfile.aemb- I am trying to hide the archive format to make it not explicit. I cannot do that because your lib is checking extension twice. at first when trying to auto-detect the correct archiver,  then the second time when calling the detected archiver. this makes it impossible to use different archive extensions than those supported.
it's just FYI. I could live with it ;) since you are working on 4.x I thought that you may want to address that case as well.

@krystian-panek-wttech

@mholt not really but ok ;) your lib is rather providing a facade that does not offer to customize format-specific options.

Sorry, but huh? You linked to the exported struct you can set the options on:
https://github.com/mholt/archiver/blob/f1ef6ebbdf2a7b10af9c44b4540fe9b953b7fba1/zstd.go#L15-L19
That lets you customize Zstd with any of the Zstandard options in the klauspost/compress package. What more do you need?

simply saying I am not sure if this extension checking is needed here: https://github.com/mholt/archiver/blob/v3.5.1/tarzst.go#L31

That's for Archiver v3... FYI I'm no longer maintaining that as v4 is the future.

we inspect file type by reading the header rather than a file extension only.

that's the clarification I wanted to read ;) cool

You linked to the exported struct you can set the options on:

yes sure, I could always use libs directly but I wanted just to tune settings for zstd but still supporting other formats as well
nvm, I am good with your feedback, thanks ;)


HTML interaction on past and future items

When flipster_item--past or flipster_item--future contain interactive HTML elements, they still trigger interaction responses (hover states, clickable buttons, etc.). Not sure if this intended behavior.

In the above example, the add to cart button works, the hover states (orange highlight) work, and the qty field is also interactable.
EDIT: This workaround should work:
.flipster__item--future *, .flipster__item--past * { pointer-events: none; }

Actually, a slightly modified CSS DOES work:
	 .flipster__item--future *, .flipster__item--past * { 		 pointer-events: none; 	 }
Navigation and scrolling still work that way, but nothing in the HTML of that item will interact until it becomes the current item.
Should I make this a pull request?

:hover effects, are allowed, yes, but if you have Flipster's  click option set to true, clicking the non-current flipster item should only switch to the item, not whatever the default action would be.
If you need to disable :hover states, then target specifically with CSS so that only the current item's content will have the hover state,
.flipster__item--current .button:hover { background: orange; }

Or use pointer-events: none like you have, though that may disable the click to switch option.


developer

( note to team: this compare and pull request appeared after Christy merged #8 inside GitHub )

Closing pull request for now (while we hold off on pushing to main branch). Please reopen if needed or help troubleshoot how/why this commit might have appeared. Thank you!


Handle new trustline update events

Handle the new trustline update request events, add a new args for balance and default to 0 if not present
see https://github.com/trustlines-network/project/issues/942

done


Read/Write register value using P4Runtime

Hi all,
I have recently started working with p4 and p4Runtime and I am now stuck on a register read/write problem.
I have defined a register in my p4 program and everything works fine when I read its value using the simple_switch_CLI. However, I wanted to do the same using the p4Runtime python API but I noticed that the .p4info file does not have any declaration regarding the register that I have created. As a result, i get the following error when I try to read the register value:
AttributeError: Could not find 'g_ingress.port_pkt_in' of type registers
Am I doing something wrong?
Thank you in advance for your help!
P.S. I apologize if this is not the right place to post this issue.

I was using the p4c compiler that is installed when running the tutorial and it was dating in April.
I updated the compiler and now the register instance does show in the .p4info file.


[bay-services] Bump jobs service, so it contains github auth

The image was built in Jenkins and pushed https://cucos-jenkins.rhev-ci-vms.eng.rdu2.redhat.com/job/fabric8-analytics-jobs-master/212/
Credentials required to run this should be upload too.

Please wait with merge, need to test it in staging. Otherwise we won't be able to access jobs service. Thanks in advance.

It's OK now, so we can proceed with merging and deploying this.

built image of jobs is visible here: https://cucos-jenkins.rhev-ci-vms.eng.rdu2.redhat.com/job/fabric8-analytics-jobs-master/248/


Bump Go and Dockerfile versions

This PR updates:

Move Dockerfile.dapper to use BCI Golang bci/golang:1.19.
Move the main CLI image in package/Dockerfile to use BCI Base bci/bci-base:15.5.
Move the main CLI image in package/Dockerfile to run as a non-root user.
Bump Go to 1.19 in go.mod.
Several bumps in go.mod to fix CVEs:

github.com/rancher/wrangler
golang.org/x/crypto
golang.org/x/net
golang.org/x/sys
golang.org/x/term
golang.org/x/text
No other major dependency was bumped besides the ones listed.

Bump rancher/dapper to v0.6.0 in .drone.yml.
Run go fmt on config/config.go to fix a small formatting issue.

The symptom of -race no longer working could be related to the fact that something on the changes broke CGO - which -race relies on.
This project does not use CGO directly, however some of its dependencies does (e.g. docker). Therefore, this may result in specific execution paths having a different behaviour (or may panic at runtime) due to the lack of CGO - i.e. some specific features may not be supported.

What does it was not working properly. mean? I have removed it from RKE https://github.com/rancher/rke/pull/3174 because it needs an additional package to be installed to be used.
  | go1.19-race                      | Go runtime race detector                                               | package

@superseb you are right, I somehow missed that bci/golang doesn't have the go1.19-race package. Locally it worked for me, because it's available in Tumbleweed. I updated the PR to re-add the -race flag to go test.
Will check offline with the BCI team if they can add the package.

FYI the BCI team said that they will add go1.xx-race package in the next Go BCI image update.

@superseb you are right, I somehow missed that bci/golang doesn't have the go1.19-race package. Thanks for noticing it. Locally it worked for me, because it's available in Tumbleweed. I updated the PR to re-add the -race flag to go test.
Will check offline with the BCI team if they can add the package.

Removed the hacky code to add go-racer package, because it's now inside the Go base image by default:
> podman run --rm -it registry.suse.com/bci/golang:1.19 rpm -aq | grep go
go1.19-doc-1.19.11-150<IP_ADDRESS>.x86_64
libgomp1-12.3.0+git1204-150<IP_ADDRESS>.x86_64
go1.19-1.19.11-150<IP_ADDRESS>.x86_64
go1.19-race-1.19.11-150<IP_ADDRESS>.x86_64

CC @superseb and @pjbgf


Create LICENSE file

Without a license this is not legally usable by others.
@meets2tarun To which license would you agree?

GPLv3
MIT

Or any other?
You can create a pull-request with a LICENSE file in the root directory. Github provides the license text.
I will merge, so we see that we both agree in the git history.
What do you think?

Fine, I will soon make a PR.

Thanks! It is a pleasure working with you :)


Problems with OSX High Sierra and OSX El Capitan.

Multiple crashes during reboot, stand-by and normal working session. Looks like the fix is not effective on OSX High Sierra. The kernel panic during reboot happens with OSX El Capitan too (SIP Disabled, system patched with MBPMid2010_GPUFix 5.0 before and then 6.0). Any solution?

The fix works for a lot of people on High Sierra and on Capitan (including me). It must be something related to your configuration.

do you have any external screen plugged in?
does the application of the patch works fine (success message at the end of patching)
do you have the software GFXCardStatus installed?

I have not any external screen plugged in and I get a success message at the end of patching. Yes, I'm using GFXCardStatus too (do I need to remove it?). At the moment the main problem is during the start and reboot. I'm using High Sierra 10.13.1 (17B48).

I would recommend to uninstall GfxCardStatus, it may overide the patch action.
Also try to apply the patch once, reboot and then re-apply again.

I re-applied the patch, rebooted and re-applied it again. It solved the first problem (while OS is running, no more KP) while the problem persists during the start/restart (boot of the machine).
Only after N failed reboots it access to the OS.
Seems it crashes always when the "loading" bar of OSX is in the middle. If it pass that point, I do not experience any other KP and I can start my session. It seems the patch is working only after that point for me.
Am I the only one experiencing problems of kernel panic during boot phase?
Thank You.

As far as I can remember, you are the only one I encountered with KP at startup/reboot.
To be honest, I have absolutely no idea about what you can do. Except avoid shutting down your computer...

Thank You, If I'll find any reason behind this behavior at startup/reboot I'll provide info.

Hello.
MBPMid2010_GPUFix 5.0 worked fine. But when I updated the Mac OS Sierra to version 10.13.1, the GPS panic is started. I installed MBPMid2010_GPUFix 6.0 version, but the panic appeared again. May be 6.0 version does not support 10.13.1 OS ??

After install MBPMid2010_GPUFix 6.0 i started GfxCardStatus to see how works GPU. May be this is the reason??/

First please try to reboot and apply the patch a second time, may need two application.
Also, I recommend to uninstall GfxCardStatus because it may cause conflicts with my app.

Julian, I also am having the same issue on 10.13. Your fix was amazing, and I got greedy and upgraded. I shouldn't have.
I tried the methods above like installing twice, but it didn't work. I tried both 0.5 of your program and just recently 0.6. The ktext file is loaded in the extensions section of the About my Mac. Any ideas?

@ey5dimes You can try to upload the extension manually as it is explained here : https://forums.macrumors.com/threads/gpu-kernel-panic-in-mid-2010-whats-the-best-fix.1890097/#post-23312990

Hello. I just installed High Sierra update 2 days ago, and now the favicons in my browser, Opera, are blurred, sometimes they are not displayed, just a white square in the tab.
Since this doesn't seem to happen in other browsers,  it must be an Opera related issue, I think.

I also updated to ver 10.13.6 install again MBP6.0 but do not work, my graphics is intel as default :(   Julian could you update MBP  to be compatible ? :)

@bgarm and @michcio29 : There's too much issues in a single issue thread. Please create your own issue so I can help everyone separatly.


Feature/83 add gh orgs

Add GH orgs in addition to 'ipfs':

'ipld'
'libp2p'
'multiformats'

Fixes #83
Merge #85 before this one.

Merge #85 before this one.

LGTM!


support piper tts

https://github.com/rhasspy/piper

It may make sense to fork piper and add a server build using httplib similar to whisper.cpp server

Arbius has a $100 AIUS bounty for this issue!
Brief: Fix/Complete Issue.
Please read carefully:
To begin work on a bounty, reply by saying “I claim this bounty” - you will have 48 hours to submit your PR before someone else may attempt to claim this bounty.
To complete the bounty, within 48 hours of claiming, reply with a link to your PR referencing this issue and an Ethereum address. You must comply with reviewers comments and have the PR merged to receive the bounty reward. Please be sure to focus on quality submissions to minimize the amount of time reviewers must take.

I claim this bounty

#85

Please put your Ethereum address here.

It may make sense to fork piper and add a server build using httplib similar to whisper.cpp server

Issue kept open, since Piper support added, but server is on another repo.

Please put your Ethereum address here.

0xD44248b6Ab4B6580cd982A80D4B26dC7058264f2

Bounty sent rewards with #54  : https://etherscan.io/tx/0xb50e3b438db231e3de48ad674af3dcefbcde8090cf1461333c290362ecd2606b?__cf_chl_tk=iEk9B0QAmaj2zaBd8r_MGtGQjHgl4mOm_AwchPgWodo-1712532013-<IP_ADDRESS>-1514


Create Clothing Store Template

Description 📜
Please include a summary of the change and which issue is fixed. Please also include relevant motivation and context.
Fixes # <issue_number_here>

This would be great if you provide any of this   📝

[ ] Video (Animations, screen-recordings, presentations and regular explanatory films are all possibilties etc)
[ ] Documentation (Content Creation in the form of codes or tutorials)
[ ] Other (If you choose other, Please mention changes below)

Domain of Contribution 📊

[ ] Navbar design
[ ] Footer
[ ] Single page website
[ ] Animation design
[ ] parallax effect design
[ ] Others

Checklist ✅
]

[ ] I have performed a self-review of my own code or work.
[ ] I have commented my code, particularly in hard-to-understand areas.
[ ] My changes generates no new warnings.
[ ] I'm Hacktoberfest contributor

Any tutorials or documentation have you added
(made by you only not from google)

[ ] Tutorial
[ ] Documentation

Screenshots / Gif (Compulsory) 📸

add issue no

What it means please let me know. I am beginner. Please!!
On Sun, Oct 3, 2021, 12:25 PM Ayan gupta @.***> wrote:

add issue no
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What it means please let me know. I am beginner. Please!!
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have you created an issue before making a PR ? @ujjwalgupta9125

No. Please let me know how to do that!
It will be a great help
On Sun, Oct 3, 2021, 12:34 PM Ayan gupta @.***> wrote:

What it means please let me know. I am beginner. Please!!
… <#m_-295206034116612971_>
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How can I use inline table

Code
 if(!deps) deps = cpptoml::make_table();
 auto dep = deps->get_table(name);
 if(!dep)  dep  = cpptoml::make_table();
 dep->insert("module"    ,cmake_name);
 deps->insert(name, dep);

result
[dependencies]
	[dependencies.cpptoml]
		module = "cpptoml"

but I want results like this
[dependencies]
cpptoml = {module = "cpptoml"}

how can i use inline table

I'm having the same trouble. It looks like cpptoml can parse inline tables, but cannot write them out?  I tried setting the is_inline to true when I called make_table_array, but it made no difference.

Writing inline tables seems not implemented. I would like to see this working properly as well.


[Feature] Support llvm::Function::addFnAttr

This API would be very helpful with optimization hints, such as readonly. More on this: https://llvm.org/docs/LangRef.html#function-attributes

OK, I will add this API soon.
BTW, if you need other APIs, please try to list them all at once, so that I don't have to release a version every time I add an API

Certainly! Thank you!

addParamAttr would also be a nice addition :)

@dvoytenko @ApsarasX In the meantime, I created a fork to add basic support for attributes.

@dvoytenko @ApsarasX In the meantime, I created a fork to add basic support for attributes.

Good job!
Looking forward to your PR.


Add support for security headers

http://docs.spring.io/spring-security/site/docs/current/reference/html/headers.html
HSTS in particular.

This type of change seems appropriate for a 2.1 release.

Also see https://thestack.com/security/2015/09/24/cookies-can-render-secure-websites-vulnerable-in-all-modern-browsers/


fix: replace Inngest app/generation.requested with an async worker function

Description
The quiz designer uses inngest functions. We're transitioning away from inngest and it isn't set up as a Vercel integraiton on the new Vercel project

Extract generation inngest function to a file
Wrap and call generation code
Use async background pattern

How to test

Go to the quiz designer
Generations should work after ~10 seconds instead of hanging

:tada: This PR is included in version 1.2.2 :tada:
The release is available on GitHub release
Your semantic-release bot :package::rocket:


add test for validator

#17

Codecov Report
All modified and coverable lines are covered by tests :white_check_mark:

Project coverage is 47.88%. Comparing base (e5c860e) to head (c4287f3).

Additional details and impacted files
@@            Coverage Diff             @@
##             main      #19      +/-   ##
==========================================
+ Coverage   41.34%   47.88%   +6.53%
==========================================
  Files          21       21
  Lines         520      520
==========================================
+ Hits          215      249      +34
+ Misses        294      257      -37
- Partials       11       14       +3

:umbrella: View full report in Codecov by Sentry.
:loudspeaker: Have feedback on the report? Share it here.


Scalability of Singer

Hi, @YunDeng98, I learned from the paper that we could run Singer with tens of or hundreds of sequences. Have you tried Singer with thousands of sequences? I wonder if Singer can handle that sample size. Thank you!

Hi @dandanpeng The scalability of SINGER is on hundreds of WGS, as mentioned in the first paragraph in the Discussion Section. The mentioning of "tens or hundreds of thousands" is probably in the abstract/introduction when describing other methods like tsinfer/ARG-Needle, not SINGER. I personally tried 500 sequences, but not more than that. I wouldn't recommend running SINGER for thousands of sequences.


unknown queue: gpu

Environment:

Python version 3.7.4
Spark version 2.3
TensorFlow version 2.0.0
TensorFlowOnSpark version 2.0.0
Cluster version Hadoop 2.6.5

Describe the bug:
to inform you, i can't update hadoop in major version.
i read this issue: https://github.com/yahoo/TensorFlowOnSpark/issues/76
Then, i followed this guide: https://docs.cloudera.com/HDPDocuments/HDP2/HDP-2.6.5/bk_yarn-resource-management/content/configuring_node_labels.html
I added a few Node Labels (in point 4)
Then, how can i configure the GPU nodes with a node label?

Isn't it just steps 5-7 in that guide? (Unfortunately, I didn't set this up for our grids, so I can't provide much other direction).


Milestone 5 - Refactor OOP

In this branch we implement:

Refactoring create method files.
Create separate classes for app.rb functions.
We attention to the "Single-responsibility Principle"
We tested all functions and it's working well.

We are fixing the problem, thank you in advance!


Indicate test failures with return value.

This changes the return values of the FOO! functions to indicate whether all tests succeeded. Why? Because otherwise that has to repeated every time the tests have be integrated into some toolchain, like I recently did for Travis CI. Since ASDF doesn't help with TEST-SYSTEM (grr), having a single function like RUN! return an "exit status" we can use immediately makes the code much smaller and doesn't require exporting TEST-PASSED-P (although I'd rather that and TEST-FAILURE-P were exported as well).
Single test case is added as well. I assume nobody relied on the undefined return value of EXPLAIN!, so IMO this is safe.

How about adding multiple return values to RESULTS-STATUS?

but in any case I like this feature. It is more meaningful to return some information rather than simply returning NIL.

A test can be skipped because of circular dependencies, failing dependencies or user intervention. In a CI environment the first two should be treated as failures, and the third cannot happen, so I changed this commit to use RESULTS-STATUS.
Thanks.

is this change automatically updated to the documentation site? https://common-lisp.net/project/fiveam/docs/index.html


Allow expressions with multiple attributes

Description
This PR attempts to tackle a long-standing TODO for CVXPY, which is enabling users to specify more than one special attribute for variables and parameters.
Note: I don't think the PR is ready by any means yet, but I would like some feedback and potentially start a discussion on what tests can be added (which combinations of attributes, what sorts of feasibility problems, etc.).
I have imported the cvx2attr reduction to ensure that the attributes are in fact able to create all the expected new constraints. It seems like many things are working by default (for example, bounds and integer/boolean and also PSD with nonneg).
Issue link (if applicable): #566
Type of change

[x] New feature (backwards compatible)
[ ] New feature (breaking API changes)
[ ] Bug fix
[ ] Other (Documentation, CI, ...)

Contribution checklist

[x] Add our license to new files.
[x] Check that your code adheres to our coding style.
[x] Write unittests.
[x] Run the unittests and check that they’re passing.
[x] Run the benchmarks to make sure your change doesn’t introduce a regression.

 Thank you for your submission! We really appreciate it. Like many open source projects, we ask that you sign our Contributor License Agreement before we can accept your contribution.William Zijie Zhang seems not to be a GitHub user. You need a GitHub account to be able to sign the CLA. If you have already a GitHub account, please add the email address used for this commit to your account.You have signed the CLA already but the status is still pending? Let us recheck it.

We decided to pause work on multiple attributes until ND-array support is finished.


Make main-branch Qiskit distribution report as dev version

Summary
This moves the .dev0 pre-release version specifier from being part of the git-hash logic to being an inherent part of the distribution version.  The qiskit/VERSION.txt file is currently used for two very similar purposes: it identifies the version of (what will be) the qiskit distribution on PyPI, and the qiskit Python package.
We currently have runtime logic on import qiskit to modify the version to append .dev0+<hash> if the source is in a git checkout, but this does not affect the distribution version (which is what pip reads, when doing things like pip install git+<qiskit>@main).  This causes problems for downstream projects wanting to proactively test against Qiskit main, where some of their dependencies have put in qiskit<1.0 pins for the time being.
We don't want to require all downstream packages to relax their release pins until necessary and verified, but ~1.0.0.dev0 < 1 in Python land, so moving the .dev0 logic to be hardcoded in the distribution version as well should allow pip resolution to be overridden when a git dependency on Qiskit-main is used in a complete pip install command.~

[!WARNING]
While the packaging guidelines do say that "1.0.0.dev0 is less than 1.0.0" and things like packaging.version will confirm this using Python's built-in <, the trouble is that later down, when used in requirements, < excludes pre-releases unless the RHS is a pre-release itself.

For the immediate term goal of getting Qiskit Experiments' testing working, which relies on qiskit-dynamics, which in turn (very validly) relies on qiskit<1, so installing Qiskit from main will cause a packaging conflict.  The only way I can see to get round this is to use the pip "feature" that environment resolution need not be consistent through multiple calls to pip install.  I guess that means we're going to have to do
pip install -c constraints.txt qiskit-experiments qiskit-dynamics [... all requirements ...]
pip uninstall -y qiskit-terra qiskit
pip install -U git+https://github.com/Qiskit/qiskit

which is obviously highly fragile, and technically a broken environment.

Details and comments
If this is accepted and something we want to keep doing in the future (imo we should), then we might want to tweak our release-process documentation to include it.

Pull Request Test Coverage Report for Build<PHONE_NUMBER>

0 of 0   changed or added relevant lines in 0 files are covered.
No unchanged relevant lines lost coverage.
Overall coverage increased (+0.01%) to 89.548%

Totals

Change from base Build<PHONE_NUMBER>:
0.01%

Covered Lines:
59623

Relevant Lines:
66582

💛  - Coveralls

The QPY test failure is easy to fix, but I've just been testing more locally, and this doesn't actually completely fix the resolution issues I was seeing, so I need to debug a bit more.

TBH, if we were to go this route I'd probably prefer that we just start using something like setuptools-scm and set all the version strings dynamically based on the git repo.

Yeah, that's probably a better strategy, and something that'd be good to maybe look into.  That said, it doesn't actually solve the immediate problem, so I'm not super bothered about pushing this through quickly now.

Closing as not needed.


Update es.json

Please do not accept any translation again, I made several corrections.
"I only say that if they change what is already well translated, I will not collaborate again".

First of all I would like to accept that I don't know Spanish.

Please do not accept any translation again

If this was the case, then KNTRO was the original Spanish translator (#92). You made changes in #94 and I accepted them. So, I cannot reject contribution from others. It feels rude.
Also, the latest translation in #239 added 10 new translations. That was a good enough reason for me to accept.
I would take care not to accept in future if anyone else just changes the letters from small to capital.

"I only say that if they change what is already well translated, I will not collaborate again".

To me, what KNTRO did was already well translated. You changed it, but I did not reject your work, the time you put into doing it and I'm still accepting this pull request. So, if someone is doing some work and it feels genuine to me, I will accept it.

Just say that if you accept new translations that are new lines, and the new translator only corrected 2 lines that I'm wrong, and increase about 5 new lines, and the rest just change from lowercase to uppercase. Example: a - A
In Spanish, any sentence begins with capital letters and then all with capitals, except proper names. Example: Google - and not "google"
Thank you for your understanding, it's just that it's annoying to change something that is well done.


Calculation Unsuccessful preventing confirming payments

Title
Calculation Unsuccessful preventing confirming payments
Description
Unable to use the wallet due to this issue

Date added
Bounty Amount

@kri8or was this resolved or are you still getting this?

Will close this issue due to inactivity.  I think we had an issue displaying errors related to fees which should be fixed in the most recent release.


warning Error running install script for optional dependency: ".../node_modules/unix-dgram: Command failed. Exit code: 1

You need to use a more recent version of NPM (v9 or later)


Debug the .elf file, enter the abort

After generating an elf file, I enter debug and cannot run to _main,
If after entering abnormal inter
CMakeLists.txt
rupt。

It seems your project builds fine and then the application never reaches main(). This question beyond the cmake-tutorial.
I'd advise you contact the IAR Systems Technical Support (https://www.iar.com/rfta) directly if you need further assistance.
I will close now this issue.


Portus vs Docker credential store

This is more of a question for the maintainers of project. Docker is supposed to be landing capability to use an external credential store for registry authentication in 1.11  How do you see this development in relation to this project? Will there be redundancies?

Hi! In principle there should be no redundancies. The thing here is that the external credential store is a safer way to implement the credentials stored in your system that docker will use. Therefore, there's no interference between this new credential store and the registry or Portus.
That being said, one of the side-effects of this is that Application tokens are no longer required to work around this security threat. However, we are planning to use application tokens for other use cases, so this new credential store support does not discard this idea either.

Moreover, we recently setup a Google Group for Portus in which these kinds of questions are better suited. So keep that in mind for the next time. For now, feel free to submit comments here if you have any more doubts on this topic :wink:

Hello, appreciate this. Many thanks.


BGFX Vsync issue with Vulkan

Version
3.3.2 (nightly)
Platform
Linux x64
JDK
Zulu OpenJDK 17
Module
BGFX, Vulkan, GLFW
Bug description
I am having issues using VSync with BGFX when the Vulkan backend is enabled.
When using BGFX, you can enable VSync using BGFX_RESET_VSYNC as a reset flag. Initially it appears to start and run fine, however when doing any window (GLFW specific) events, such as resizing or moving the window, the application begins to freeze and then eventually lead to a hang and/or crash.
Steps to reproduce:

Run the ExampleBGFX (NanoVG) demo.
Ensure the BGFX.BGFX_RESET_VSYNC is set as a reset flag, so that Vsync is enabled.
Ensure the Vulkan renderer is being used or select it manually using BGFX_RENDERER_TYPE_VULKAN with BGFXInit.type(), on linux it mostly appears to default to Vulkan.
Resize the window for a bit or drag it around and it will eventually cause the program to hang and/or crash.

I have reproduced the issue on multiple computers using Linux x64, however have not yet been able to test it on Windows or any AMD graphics cards (so if anyone could test this there that would also help narrow the issue down to whether its platform or graphics card specific).
The issue does not happen when using the OpenGL renderer, BGFX_RENDERER_TYPE_OPENGL, so appears to be Vulkan renderer specific. This may be an upstream issue however, best to first try narrow it down further.
Stacktrace or crash log output
Current thread (0x00007f5440a546e0):  JavaThread "Thread-0" daemon [_thread_in_native, id=10948, stack(0x00007f5472252000,0x00007f5472a51000)]

Stack: [0x00007f5472252000,0x00007f5472a51000],  sp=0x00007f5472a4f4e8,  free space=8181k
Native frames: (J=compiled Java code, j=interpreted, Vv=VM code, C=native code)
C  [libnvidia-glcore.so.515.65.01+0x128d9d4]

siginfo: si_signo: 11 (SIGSEGV), si_code: 1 (SEGV_MAPERR), si_addr: 0x00000000000000a8

Register to memory mapping:

RAX=0x0 is NULL
RBX=0x00007f5472a4f600 is pointing into the stack for thread: 0x00007f5440a546e0
RCX=0x0000000000000023 is an unknown value
RDX=0x000000df961d0000 is an unknown value
RSP=0x00007f5472a4f4e8 is pointing into the stack for thread: 0x00007f5440a546e0
RBP=0x0000000000000001 is an unknown value
RSI=0x00007f5472a4f510 is pointing into the stack for thread: 0x00007f5440a546e0
RDI=0x00007f544035abf0 points into unknown readable memory: 0x00007f544035a5d0 | d0 a5 35 40 54 7f 00 00
R8 =0x0 is NULL
R9 =0x0 is NULL
R10=0x00007f5433a52380: <offset 0x0000000001252380> in /usr/lib/libnvidia-glcore.so.515.65.01 at 0x00007f5432800000
R11=0x00007f5440a45740 points into unknown readable memory: 0x0000000001cdc0de | de c0 cd 01 00 00 00 00
R12=0x00007f5440a8d640 points into unknown readable memory: 0x00007f5434c8dca0 | a0 dc c8 34 54 7f 00 00
R13=0x00007f5440a26d00 points into unknown readable memory: 0x00007f5434c8dca0 | a0 dc c8 34 54 7f 00 00
R14=0x0000000000000001 is an unknown value
R15=0x00007f544035bbd0 points into unknown readable memory: 0x00007f5434c8dae8 | e8 da c8 34 54 7f 00 00

Hey @kappaOne,
Tested on Windows 11, Zulu JDK 18, latest Nvidia drivers:

Vsync works with the D3D9, D3D12, OpenGL and Vulkan backends, no crash on window move/resize.
Vsync does not work with the D3D11 backend, again no crash on window move/resize.

Hi Spasi,
Thanks for the quick testing.
After some more testing, the hanging and slow down (and eventual crash) appears to be due to sudden 100% CPU usage on the main thread.
It appears that while resizing the GLFW window using the OpenGL Renderer, VSync continues to work (consistent fps) thus throttling the main thread (application loop) as normal.
However when using the Vulkan Renderer and resizing the window, the fps becomes uncapped causing main thread (application loop) to run at 100% causing the hanging and eventually crashing the driver/app. If you stop resizing the window before it hangs the vsync capped fps returns back to normal.
Adding a simple Thread.sleep() into the application loop prevents the issue with the Vulkan renderer. I am leaning towards this being a driver bug or a problem with the way BGFX Vulkan renderer handles resizing here.

I've now tested on an intel card and can confirm that the issues doesn't happen there, therefore this is most likely a nvidia driver bug.


Overhaul

Suggest an overhaul to improve the library:

Change debounce states from #define statements to a new enumerated type (HIGH, LOW, RISE, FALL)
Change getDebounceState() to getState()
Change constructor to simplify initialization: DebounceNoInt(int pin, int mode, unsigned long time_us)

mode is then passed to pinMode(pin, mode) in begin()

Change run() to update()

If update() changes the debounce state to RISE or FALL, the state is set to HIGH or LOW on the next update() call, even if it hasn't been long enough to update the history buffer. This will prevent edge states being repeated over multiple update() calls.
No need to check the history buffer for HIGH or LOW states, they are covered by the method described in the previous bullet. This removes the need for a NOISE state and reduces run time.
update() returns the debounce state, giving user code more flexibility.

Remove runAndGetDebounceState()

This will break old code, requiring a major release.

Using the enumerated type will likely cause compiler errors due to conflicts with the internal Arduino definitions of HIGH and LOW.
One solution would be to #define RISE and FALL and use the Arduino HIGH and LOW.
Another solution might be a scoped enumerated like done here: https://stackoverflow.com/questions/34319637/how-solve-compiler-enum-redeclaration-conflict

Completed by #6.


Exclude bots from "Moderators" pane

Put their names into faf_client.properties (or better; let the server tell us their names)

The increasing number of bots support my point against this: we had to maintain a list of bot names in the client, which is not really sensible.


Spring cloud vault in branch 2.x cant be setup without SSL

due to the fact that SSL is always initialized in the class VaultProperties.java, you are unable to run get the system running without specifying a keystore and a trust.
Is there a way to disable the SSL?
thank you.

Could you elaborate why you're mentioning 2.x explicitly? Is there a difference to 1.x?
Did you try to set spring.cloud.vault.scheme=http?

@mp911de thanks for the quick reply (and specially thanks for releasing the 2.x snaps)
I do have the scheme set to http and I mentioned 2.x since that is where we have been active. I have not tried this on 1.x branch, My feedback was solely based on the source and our config.  I can add our config here tomorrow just to have a reference as well.

Here is what I have in my bootstrap.yml
spring:
  application:
    name: config-server
  profiles:
    active: ide,vault
  cloud:
    vault:
      token: some-token-uuid
      host: vault
      port: 8200
      scheme: http
    config:
      server:
        vault:
          host: vault
          port: 8200
          scheme: http
          backend: secret
          defaultKey: application

running it as mentioned above will produce the exception that spring.cloud.vault.ssl.keyStore is not defined (vault running without ssl).
I tried removing spring.cloud.vault and keeping spring.config.server.vault only, then I got the error that spring.cloud.vault.uri is not defined.
As result I switched vault to run with SSL and included spring.cloud.vault.ssl  conf , then we had it running.
Any ideas?  Am I misconfiguring something ?
Here is my stack for the config server:
compile('org.springframework.cloud:spring-cloud-config-server:2.0.0.BUILD-SNAPSHOT')
compile('org.springframework.cloud:spring-cloud-starter-bus-kafka:2.0.0.BUILD-SNAPSHOT')
compile('org.springframework.cloud:spring-cloud-starter-vault-config:2.0.0.BUILD-SNAPSHOT')
compile('org.springframework.cloud:spring-cloud-vault-config:2.0.0.BUILD-SNAPSHOT')
compile('org.springframework.cloud:spring-cloud-config-monitor:2.0.0.BUILD-SNAPSHOT')

What exactly are you trying to achieve? Spring Cloud Config Server does not use Spring Cloud Vault.

oh wow, now that I look at the source I can clearly see that I didnt require the spring-cloud-starter-vault-config at all for the vault backend in my config server. Damn this is so confusing as the name of almost implies that it connected to config and vault. The reason we explicitly included spring-cloud-vault-config was to force override the version (which we dont require at all)
I apologize again, I will remove the extra dependencies tomorrow and give me feedback here once more.
Thank you for taking the time.
p.s. thats why the boot project made sense!


feat: Add spark-connect tests suite

Feature Type

[X] Adding new functionality to quinn

[ ] Changing existing functionality in quinn

[ ] Removing existing functionality in quinn

Problem Description
We need to test quinn against both connect and classic.
Feature Description
.
Additional Context
This one may be used as an example: https://github.com/pyspark-ai/pyspark-ai/blob/master/run_spark_connect.sh

Hi @SemyonSinchenko - are you okay if I give this one a try?

@nijanthanvijayakumar This one is little tricky. It requires to download and run Spark-Connect server before running tests and also use SparkSession.remote(...). You may check how I did it for pyspark-ai:

https://github.com/pyspark-ai/pyspark-ai/blob/master/run_spark_connect.sh
https://github.com/pyspark-ai/pyspark-ai/blob/master/.github/workflows/build_and_test.yml#L33
https://github.com/pyspark-ai/pyspark-ai/blob/master/tests/test_spark_connect.py

Feel free to ask me if you face any problem with it.

Feel free to ask me if you face any problem with it.

Thank you; will definitely do. A few initial questions:

Does the version have to be locked to v3.5.1?
Also does all of the functions have to be tested with Spark-Connect?

Feel free to ask me if you face any problem with it.

Thank you; will definitely do. A few initial questions:

Does the version have to be locked to v3.5.1?
Also does all of the functions have to be tested with Spark-Connect?

I would like to take a version from environment variable
We do need to cover all the cases but it could be cool to cover each function at least once

BUT! To avoid very big PRs that are hard to review, please focus at first on CI/CD and suite. You may create a single test for that.

@SemyonSinchenko - I created the basic version based on the references you shared and I got a pretty good idea of what all files should be changed to extend the Spark-Connect session to the other tests. Here's the link to the commit.
However, I was trying to execute the spark-connect tests using make on my local and it has been failing with issues related to dependencies such as pandas, numpy and pyarrow. Following are the versions of those libraries/dependencies I updated in the pyproject.toml and tried setting them up in my local VENV.
[tool.poetry.dependencies]
pandas = "^1.3.0"
pyarrow = "^5.0.0"
numpy = "^1.21.0"

However, while installing pyarrow I keep getting an error (as below).  Any suggestions on how to resolve these issues?
Note: This error originates from the build backend, and is likely not a problem with poetry but with numpy (1.19.4) not supporting PEP 517 builds. You can verify this by running 'pip wheel --no-cache-dir --use-pep517 "numpy (==1.19.4)"'.

  Error:

  at /opt/homebrew/Cellar/poetry/1.8.3_2/libexec/lib/python3.12/site-packages/poetry/installation/chef.py:102 in install
       98│             InstalledRepository.load(self._env),
       99│         )
      100│         installer.update(True)
      101│         if installer.run() != 0:
    → 102│             raise ChefInstallError(requirements, io.fetch_output(), io.fetch_error())
      103│
      104│
      105│ class Chef:
      106│     def __init__(

Cannot install build-system.requires for pyarrow.

@SemyonSinchenko - I created the basic version based on the references you shared and I got a pretty good idea of what all files should be changed to extend the Spark-Connect session to the other tests. Here's the link to the commit.
However, I was trying to execute the spark-connect tests using make on my local and it has been failing with issues related to dependencies such as pandas, numpy and pyarrow. Following are the versions of those libraries/dependencies I updated in the pyproject.toml and tried setting them up in my local VENV.
[tool.poetry.dependencies]
pandas = "^1.3.0"
pyarrow = "^5.0.0"
numpy = "^1.21.0"

Tried with pyarrow=4.0.1 and numpy=2.0.0 as well. Observing the same issue.
However, while installing pyarrow I keep getting an error (as below).  Any suggestions on how to resolve these issues?
Note: This error originates from the build backend, and is likely not a problem with poetry but with numpy (1.19.4) not supporting PEP 517 builds. You can verify this by running 'pip wheel --no-cache-dir --use-pep517 "numpy (==1.19.4)"'.

  Error:

  at /opt/homebrew/Cellar/poetry/1.8.3_2/libexec/lib/python3.12/site-packages/poetry/installation/chef.py:102 in install
       98│             InstalledRepository.load(self._env),
       99│         )
      100│         installer.update(True)
      101│         if installer.run() != 0:
    → 102│             raise ChefInstallError(requirements, io.fetch_output(), io.fetch_error())
      103│
      104│
      105│ class Chef:
      106│     def __init__(

Cannot install build-system.requires for pyarrow.

@SemyonSinchenko - an update on the above.

I was able to fix that by using pyarrow=1.16.x. I have updated the pyproject.toml with the latest list of libraries.
I was able to get this spark-connect test working in CI 🥳. Here's the link to the GitHub Actions on my fork.

I will raise a PR for you to review. Please let me know your comments on that.

@nijanthanvijayakumar I think you may continue to work in this issue. If you can, try to run all the existing tests with Spark Connect. Feel free to ask me, if you face any issue.

Thank you @SemyonSinchenko . Will work on integrating the test cases and create a new PR.

@SemyonSinchenko - sorry I have been away from my computer for a while. I was able to fix the column_to_list function under the quinn/dataframe_helpers.py, which was one of the tests that were failing.
However, there are a couple of other test cases/functions that were failing too. Following are those:

test_array_choice
test_sort_struct_nested_with_arraytypes_nullable

| =========================== short test summary info ============================
| FAILED tests/test_functions.py::test_array_choice - TypeError: Unsupported Data Type Column
| FAILED tests/test_transformations.py::test_sort_struct_nested_with_arraytypes_nullable - chispa.schema_comparer.SchemasNotEqualError:

@nijanthanvijayakumar Thank you! May you post a more detailed stacktrace? Or even run tests in CI in your fork an give me a link to the logs?

Thank you. Yep, here they are:

CI pipeline for Spark-Connect 3.4.3 tests
CI pipeline for Spark-Connect 3.5.1 tests

@nijanthanvijayakumar It seems to me that you found an interesting behavior. Let's pause it for now.

Thank you @SemyonSinchenko; tried fixing this for hours and couldn't. Keen to know/learn more about the behaviour here.

It seems to me that is a bug in PySpark itself.
@nijanthanvijayakumar Are you in 'mrpowers' slack channel, related to this project? If so, may you say ur nickname

It seems to me that is a bug in PySpark itself.
@nijanthanvijayakumar Are you in 'mrpowers' slack channel, related to this project? If so, may you say ur nickname

@SemyonSinchenko - I'm not in that channel, but would love to be part of it. Thanks.

@nijanthanvijayakumar Give me your email, please. I will ask @MrPowers to contact you

Hi @SemyonSinchenko - thanks. It's<EMAIL_ADDRESS>

Hello @SemyonSinchenko . Hope you got my email address (noticed your thumbs up earlier and I assumed you had got it)? I have removed it from this chat for now, just for privacy reasons.

@nijanthanvijayakumar FYI https://github.com/apache/spark/commit/536445cc9544e22ca8b988684c0bb3df4bbed77e
May you mark this function as "non-working" if the version of spark is less than 4.0 (or less than 3.5.2 for 3.5-branch) and throw an exception, like "This function is not working in Connect environments for spark less than 3.5.2"?

@nijanthanvijayakumar FYI apache/spark@536445c
May you mark this function as "non-working" if the version of spark is less than 4.0 (or less than 3.5.2 for 3.5-branch) and throw an exception, like "This function is not working in Connect environments for spark less than 3.5.2"?

Hi @SemyonSinchenko - if my understanding is right, do you want me to do the following?

In the link you had shared, comment This function is not working for Spark-Connect v3.5.2 and less and,
Update the test_array_choice and test_sort_struct_nested_with_arraytypes_nullable test cases to throw an exception saying This function is not working on Spark-Connect environments for Spark version less than 3.5.2?

I mean you should mark functions in chispa as non-workin in connect. These functions (array_choice, etc.) should trow an exception if u are trying to call them in Connect env from spark version less than 3.5.2

@nijanthanvijayakumar FYI apache/spark@536445c
May you mark this function as "non-working" if the version of spark is less than 4.0 (or less than 3.5.2 for 3.5-branch) and throw an exception, like "This function is not working in Connect environments for spark less than 3.5.2"?

Thanks for the guidance @SemyonSinchenko . I have updated the test cases and the actual function implementation accordingly. I will be sending a PR shortly.


Release 2.13.2

Description
It's been 49 days since the last release - usually releases have been about once a month. There have been some good fixes and enhancements in v2 since then.
Can we get a version bump?
Expected behaviour
This is expected, it's a release request.
Actual behaviour
Still on 2.10 to wait for fixes in that are in the v2 branch but not 2.13.1.
Steps to reproduce
pip install connexion
Additional info:
Output of the commands:

python --version
Python 3.8.12
pip show connexion | grep "^Version\:"
Version: 2.10.0

Hi @rickpr,
We just released 2.14.0.


Deploy application: Edit manifest or specify custom manifest

From @irfanhabib on January 26, 2018 12:44
Copied from original issue: SUSE/stratos#184

Closing in favour of #1446


fixed coveralls to report both integration and unit tests (#263)

no mas. won't work as is because the
mvn coveralls:report
command fails on the parent pom with
[ERROR] No plugin found for prefix 'coveralls' in the current project and in the plugin groups [org.apache.maven.plugins, org.codehaus.mojo] available from the repositories [local (/home/travis/.m2/repository), central (https://repo.maven.apache.org/maven2)] -> [Help 1]
I tried tweaking the .travis.yml to run the coveralls command in the geowave-test directory, but it then complains that it can't find source for other files.

Coverage increased (+24.36%) to 57.22% when pulling 6501ff91f0a2efa0e251488699a33e2b632c7d00 on GEOWAVE-263-squash into d9d65bd4bddd30e5948eff91f047337313c6c023 on master.

Coverage increased (+24.36%) to 57.22% when pulling 6501ff91f0a2efa0e251488699a33e2b632c7d00 on GEOWAVE-263-squash into d9d65bd4bddd30e5948eff91f047337313c6c023 on master.

Coverage increased (+24.36%) to 57.22% when pulling d08eb457b10f1f749e4b783a9965f81fab2fba9e on GEOWAVE-263-squash into d9d65bd4bddd30e5948eff91f047337313c6c023 on master.


nuke: Fix txReader to properly restore saved mip level knob value

Description
Proposed fix for https://github.com/OpenImageIO/oiio/issues/1455.
The issue is caused by the fact that the user-facing Enumeration_knob is populated from within the Reader's constructor, which is too late when the Read is created with a non-default mip level (e.g. when loading a saved script).
To work around this without resorting to saving all of the knob's menu items, the menu index is no longer stored by the Read or used in the op hash. Instead, its value is copied to a hidden Int_knob, which drives the actual Reader and gets saved when the Read is serialized.
Also, the txReader now sets the bit-depth metadata key properly when the input file contains half data, which was an earlier oversight.

Seems good to me - thanks!

fixes #1455
(I think you have to say it like that)

LGTM. I'll test it on my end and if it builds properly, I'll merge it into master and RB-1.7.

Builds for me. Merging.


BUG: optimize: keep dim of Jacobian for n = 1

Closes #19936
The fix involves a check within approx_fprime to determine if the input size is 1. If so, the output is reshaped to a 2-dimensional array (1x1 matrix). This is the general expectation for Jacobian computation.

Before reviewing I think we need to have a deeper discussion. Let's do that in the issue.

Closing, because any changes would probably use a keyword argument, and probably the use of something along the lines of:
if mykeywordargument:
    return np.atleast_2d(J)


As a developer, I want a <Loader /> component

Strong UX will inform the user as to when certain procedures are in progress -- if even indeterminately. As a developer, therefore, it may be useful to have a reusable <LoadingIndicator />, or <Loader /> (nomenclature debatable), component, so as to convey transient loading states.
In most cases, as simple spinner will likely suffice. Accordingly:

[x] There should be a <Loader />.
[x] To accommodate the most common of use cases, the developer should be able to pass props of small={true} or large={true} to appropriately size the component.
[x] To accommodate developers or designers seeking finer control, a prop of size={Number} may be passed, which should dynamically adjust the <Loader />'s height and width.
[x] There should be a color={String} prop to enable specification of the <Loader />'s primary color.
[x] There should be a secondaryColor={String} prop to enable specification of the <Loader />'s secondary color.

Reference:

https://www.w3schools.com/howto/howto_css_loader.asp

Status update:
Although a preliminary version of the <Loader /> component was integrated with master, I have:

Performed light housekeeping, and opened PR #174 for review.

This looks good to me and has shipped in 3.4.0!

Status update:
Provide eligible:

The <Loader /> component could benefit from a design pass. In particular, we might:
[ ] Specify a default value for its color prop. To do so, please edit the border-top attribute of class .rev-Loader in file _Loader.scss.
[ ] Specify a default value for its secondaryColor prop. To do so, please edit the border attribute of class .rev-Loader in file _Loader.scss.
[ ] Specify default values for prop sizes small, medium, large, and huge. To do so, please edit the SCSS rules for .rev-Loader--small, .rev-Loader--medium, .rev-Loader--large, and .rev-Loader--huge.

Once ready:

Include a link to https://possum.revelry.co/components/loader/ in the website's main navigation.

Status update:

Reopening issue to submit PR #192.
Component could benefit from a design pass.


Encountered children with the same key

I am using MasonryList to show a list which can be switched between 1 and 2 columns. When there is just 1 column, it works normally without any errors or warnings. However, when I switch to 2 columns mode and scroll the list up, there are warnings prompting "Warning: flattenChildren(...): Encountered children with the same key".
In the keyExtractor function, I return the id of the the item. I dont think there are items with the same id.
I am a beginner in react native. So I have no idea where does this error comes from.
Please help me. Thanks.

That error will only be shown if multiple components have the same key. You might want to double check the values you are using for the key or perhaps you are doing some kind of unwanted concat of the array and causing dupes that way?

I found the reason. It is because onEndReached is triggered so many times, so the data returned is duplicated. Don't know why, so I worked around it.

Ahh okay true that would do it :)

I have the same issue and its happends when i use hot-reload. After reloading i get as endless loop:
Warning: flattenChildren(...): Encountered two children with the same key, `-Kq8fxiEzneMg3CzeoK0`. Child keys must be unique; when two children share a key, only the first child will be used.
    in RCTView (at View.js:133)
    in View (at MasonryList.js:86)
    in FakeScrollView (at MasonryList.js:203)
    in VirtualizedList (at MasonryList.js:227)
    in RCTView (at View.js:133)
    in View (at MasonryList.js:225)
    in RCTScrollContentView (at ScrollView.js:668)
    in RCTScrollView (at ScrollView.js:751)
    in ScrollView (at MasonryList.js:108)

Yes there is a known issue which onEndReached, it will be called once per column sadly. I don't have a timeline for a fix.
What I'm doing in my apps is adding a loading flag to prevent loading new data multiple times at once on onEndReached.

I'll keep #13 open to track this issue


header is different for different pages

@ANSHIKA-26 the header is different for different pages and is written multiple times which is not good in few pages like in the travel page. So, a common header file can be used which will reduce the number of lines and enhance the look.
Please assign it to me with the gssoc and hacktoberfest tags.
Below is the home page header:

and this is of the travel page header:

Thank you!

Pleasee assign me this issue!

already fixed in a PR


AMBARI-24741. Update simplejson to newest with speedup bindings to python2.7 and PyUnicodeUCS4/PyUnicodeUCS2 variations (dgrinenko)

What changes were proposed in this pull request?
simplejson version update  with implementing custom native extension loader to support same platforms as Ambari does. To see in the future, if extensions are working fine, warning were added for simplejson and subproccess32 modules.
How was this patch tested?
On cluster during Agent start/stop

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Test PASSed.

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相交链表 – LeetCode精选100题

https://krahets.com/160-intersection-of-two-linked-lists/

Test comment :)


Value attribrute on afArrayField

Hi,
I have a document and I want to insert its values in an form created by an autoform.
Let's say my doc is like :
doc = {name: "string", array: ["string1","string2"]};
The form works with a db called "Activities" with the following schema:
Activities.attachSchema(new SimpleSchema({
array: {
type: [String],
},
name: {
type: String,
},
}));
when I write :
{{> afQuickField name="name" id="name" value=name}}
I have "string" as a default value in the input and it works fine.
However, when I write
{{> afArrayField name="array" value=array}}
"string1" and "string2" do not appear in the input field
How can I make it work?
Thanks!

+1

@charlesvestur did you figure out how to make this work! I seem to have run into a similar issue


Add "shim" config so JSPM/SystemJS loads angular first.

This only affects installations done with:
jspm install npm:angular-touch

@petebacondarwin I'm slowly adding this to all the bower- repos.

Landed thanks


Loader not display when I show it on delete or some long process

Hello, I am trying to add loader because when I remove multiple fields then for user experience screen is hang. but actually in it doing process like update cell etc..
So here I add the loader in updateCells function in jquery.jexcel.js
The issue is I can see in console that loader is in hide/show but can not see it in display.
I also check if there is any z-index or some other process but can not find.
I remove 5 column/2 row and the result will display to chart and during that process I am trying to display loader.
Please help me how can I show the loader.

Sorry, you need to send same example. But this seems out of the jExcel scope... ;(


MRG: Fix text label

Fixes this problem:
https://larsoner.github.io/mne-biomag-group-demo/_images/sphx_glr_plot_source_stats_001.png
While I was at it, I hit a couple of minor snags on Py3k so I added a 3.6 CI (via environment.yml) and also moved over to pytest (nose is no longer maintained).

Okay I removed the Py3k CI because I couldn't get it to be stable, but the rest of this (including the transition to pytest from nose) is good to go and CIs are happy
https://41-1551431-gh.circle-artifacts.com/0/tmp/circle-artifacts.SmD6e3t/html/auto_examples/plot_meg_inverse_solution.html

LGTM

Great! pytest is such an improvement.


Keypairs not removed from old hosts

Rancher Version:
1.1.2
Docker Version:
1.11
OS and where are the hosts located? (cloud, bare metal, etc):
AWS
Setup Details: (single node rancher vs. HA rancher, internal DB vs. external DB)

Single node Rancher
External DB (RDS)
No HA proxy

Environment Type: (Cattle/Kubernetes/Swarm/Mesos)
Any
Steps to Reproduce:

Create any new environment, and add 2x machines, named staging1 & staging2
Delete the machines and the environment
Create a new environment, and add the same 2 machines (same names)

Results:

Expected:
Keys to be removed when machines are removed, so that those re-creating new instances with the same name won't conflict with old names

Note: I don't have the steps to reproduce exactly how the machines were removed in the first place. It could be because I simply deleted the environment (assuming the machines would go down with it), and then later removed the hosts manually - which would make sense why keypairs weren't removed with them.
This probably relates to #5777

You are correct, if you remove the host manually, AWS does not remove the keypairs.  Associated to #5777.


Snackbar throws error when anchorOrigin value is number

[x] This is a v1.x issue.
[x] I have searched the issues of this repository and believe that this is not a duplicate.

Expected Behavior
According to the Snackbar docs docs, The <Snackbar/> component should be able to accept a number for anchorOrigin.vertical and anchorOrigin.horizontal. It should work like the <Popover/> component.
Current Behavior
MUI throws a runtime error if you pass a number:
Material-UI: capitalize(string) expects a string argument.

It's because of this line:
https://github.com/mui-org/material-ui/blob/master/packages/material-ui/src/Snackbar/Snackbar.js#L243
Steps to Reproduce
In this CodeSandbox example, it'll throw a runtime error when you try to open the snackbar.
Here is a similar (working) CodeSandbox example for a popover.
Context
I don't see this issue as a major blocker since consumers of <Snackbar/> can always customize the positioning using classes. Also, you can pass a numeric string (e.g. "10" or "10px") to anchorOrigin.vertical and anchorOrigin.horizontal.
I think the most important thing right now is that the docs and the TypeScript definitions should be consistent with the runtime behavior.
Should we update the docs and the TS definitions to indicate that numbers can't be used? If so, I'll definitely submit a PR. Or should we actually implement support for passing numbers to anchorOrigin?

@oliviertassinari Great point, thanks! This weekend, I'll update the docs, prop-types, and TypeScript definitions.
By the way, what I said here is wrong:

Also, you can pass a numeric string (e.g. "10" or "10px") to anchorOrigin.vertical and anchorOrigin.horizontal.

You can not pass a numeric string. It won't cause a runtime exception, but it won't actually position the snackbar as expected. I'll make sure that the typings prevent generic strings like "10px" from being used. We should only allow the enums.


whitespace on top

Your Environment

plugin version: 3.1.1
Prettier version: 2.3.2
node version 14

Describe the bug
The plugin removes the whitespace before the imports' block, but it should not be affected at all.
To Reproduce
Input:
/* istanbul ignore file */

import foo from 'foo';

Output:
/* istanbul ignore file */
import foo from 'foo';

Expected behavior
/* istanbul ignore file */

import foo from 'foo';

Configuration File (cat .prettierrc, prettier.config.js, .prettier.js)
{
  "printWidth": 80,
  "tabWidth": 2,
  "useTabs": false,
  "semi": true,
  "singleQuote": true,
  "trailingComma": "all",
  "bracketSpacing": false,
  "jsxBracketSameLine": false,
  "arrowParens": "always",
  "importOrder": ["^@(.*)/(.*)$", "^#/(.*)$", "^[./]"],
  "importOrderSeparation": true,
  "importOrderSortSpecifiers": true
}

@byara The "input" example above is properly handled by Prettier (if several lines added between the comment and the first import, then just 1 empty line remains) but once added this plugin, it removes all the whitespace.

Looks like this PR wanted to fix this issue: https://github.com/trivago/prettier-plugin-sort-imports/pull/24
@ayusharma @byara Can you provide any info why that PR was closed? Is this planned to be fixed?
Thanks!

Looks like this PR wanted to fix this issue: #24 @ayusharma @byara Can you provide any info why that PR was closed? Is this planned to be fixed? Thanks!

Same. Hope this feature can be considered. In the projects I work on, we put the Apache License at the top. So we want to have a blank line between it and the actual code.

I'm seeing the same issues with copyright blocks on top of our files.  It's removing the blank separator line.

Same problem with copyright blocks in our project.

Same here (copyrights issue)


textInputbar in the middle screen after the transition

If don't hide the keyboard before moving to another viewController, after return textInputbar in center screen. It begins after first transition.

I believe this is the same issue as discussed in #487. I was having very similar behavior and when I logged the calls on didChangeKeyboardStatus, I was getting the same results of didHide never being called.


[BUG] Federation support.

I'm unsure if this is a bug, or just not in the preset. But currently, I'm trying to use the preset in combination with federation.
But I'm not seeing any types being generated.
To Reproduce
Use the following config:
import type { CodegenConfig } from '@graphql-codegen/cli'
import { preset } from '@eddeee888/gcg-typescript-resolver-files'

const config: CodegenConfig = {
  schema: '**/schema.graphql',
  generates: {
    'src/schema': {
      preset,
      config: { federation: true },
    }
  }
}
export default config

generate types
Expected behavior
I expect a referenceResolver type to be generated.

Hello 👋
You can pass typescript-resolvers config through presetConfig.typesPluginsConfig option. I'll update the README to make it clearer
In your case, this should work:
import type { CodegenConfig } from "@graphql-codegen/cli";
import { preset } from "@eddeee888/gcg-typescript-resolver-files";

const config: CodegenConfig = {
  schema: "**/schema.graphql",
  generates: {
    "src/schema": {
      preset,
      presetConfig: {
        typesPluginsConfig: {
          federation: true,
        },
      },
    },
  },
};
export default config;

Doing this adds a _FieldSet in Scalars:

I also haven't tried federation so please let me know what else's missing. Thanks! 🙏


dropdown styling

Description
Adds basic, consistent styling for the Dropdown component
Checklist

[x] For UI or styling changes, I have added a screenshot or gif showing before & after
[ ] I have added a changeset

Chrome

Safari

Firefox

no idea why this mac node 20 test is failing - happening every time for a different reason

I've got conflicting icons and base styles in safari. Going to throw in some fixes.

I missed a build step -- disregard the above 👍


suffix bug

I'm trying to use the suffix "years" and it's showing "yers". It removes the letter "a" from any word I try to use as a suffix.
$('#cover-years').inputmask('decimal', {
suffix:" years",
rightAlign: false,
onBeforeMask: function (value, opts) {
return value;
}
});

Try something like this
I solved the same problem with this
$('#cover-years').inputmask('decimal', {
suffix:" years",
rightAlign: false,
definitions: {
a: { validator: "" }
},
onBeforeMask: function (value, opts) {
return value;
}
});

Thank you, this worked. 👍

@marcelokohl , @IvanZepeta ,
There was a regression due to some changes in the definitions, which causes this.
This is now fixed so you can use the suffix years again without the workaround.


Mock2 expected abundance replication issue

Hello,
I'm trying to replicate the Mock2 expected abundance results at 99% confidence, and more specifically only the expected abundance at the genus level.
From the provided data I have used only the "forward read" which I have trimmed at the position 135 towards the 3'.  I didn't use the "reverse read" because the quality didn't seem that good.
I have done various trials using Qiime 1.9.1 and the parameters that brought me closer to the expected results were the following:
split_libraries_fastq.py \
-m ${mapping} \
-i ${raw} \
-b ${index} \
-o splitting_tmp \
-p 0.75 \
-q 19 \
-r 3 \
--rev_comp_mapping_barcodes

pick_open_reference_otus.py \
-i ${fasta_file} \
-o ${output_dir}\
-r $HOME/gg_13_8_otus/rep_set_aligned/99_otus.fasta \
-p ${parameters_file}

Parameters_file:
pick_otus:similarity	0.99
assign_taxonomy:assignment_method	rdp  # version 2.2
assign_taxonomy:id_to_taxonomy	$HOME/gg_13_8_otus/taxonomy/99_otu_taxonomy.txt
assign_taxonomy:reference_seqs_fp	$HOME/gg_13_8_otus/rep_set/99_otus.fasta
align_seqs:template_fp	$HOME/gg_13_8_otus/rep_set_aligned/99_otus.fasta

Genera identified:
In total 28 genera were identified.
5/28 genera were not in the expected results (denoted as misclassified).
23/24 of the expected genera were identified.
Genera abundances:
In most of the cases the abundances were not matching the expected ones. Please see the results at the bottom.
Bokulich et al. 2015
According to the paper sortmerna should give better results regarding precision, recall and F measure. I used the parameters mentioned in the methods for sortmerna (0.51:0.8:1:0.8:1) and actually I got worst results (8/29 genera misclassified, 21/24 of the expected genera were identified).
Could please tell me what I'm doing wrong?
Results using RDP classifier:
Genera            Found    Expected  Source
Acinetobacter     0.0680   NA        NA
Akkermansia       4.5545   2.1277    2.0833
Alistipes         0.6976   2.1277    2.0833
Anaerococcus      2.5559   2.1277    2.0833
Anaerotruncus     0.4444   2.1277    2.0833
Bacteroides       29.8751  25.5319   25.0000
Bifidobacterium   5.3094   4.2553    4.1667
Blautia           2.0612   4.2553    4.1667
Clostridium       4.5551   8.5106    14.5833
Collinsella       0.1558   2.1277    2.0833
Coprococcus       NA       2.1277    2.0833
Dorea             8.4409   8.5106    4.1667
Edwardsiella      2.0291   2.1277    2.0833
Enterobacter      0.0134   2.1277    2.0833
Escherichia       6.8449   4.2553    4.1667
Eubacterium       NA       NA        6.2500
Faecalibacterium  0.0498   2.1277    2.0833
Lachnospira       2.7171   NA        NA
Lactobacillus     0.3774   NA        NA
Parabacteroides   2.6164   2.1277    2.0833
Proteus           0.0535   2.1277    2.0833
Providencia       0.0123   2.1277    2.0833
Roseburia         0.4342   2.1277    2.0833
Ruminococcus      1.3711   4.2553    6.2500
Shigella          0.0262   NA        NA
Streptococcus     8.9549   2.1277    2.0833
Subdoligranulum   4.8672   2.1277    2.0833
Victivallis       0.0375   NA        NA
[Eubacterium]     0.5718   6.3830    NA
[Ruminococcus]    10.3051  4.2553    NA

Thank you for your quick response.
I see that I have created confusion with the word "replicate", apologies for that.
The aim was not to replicate in the lab the source composition of the Mock2 community and run a bioinformatic analysis afterwards, but to analyze the publicly available data of the following repository:
https://github.com/caporaso-lab/mockrobiota/tree/master/data/mock-2
In this repository the following files are provided:

forward-read
reverse-read
index-read
sample-metadata.tsv
source taxonomy abundance
greengenes_13_8_99 expected taxonomy abundance

According to the README file this mock community is referred as B2 dataset in Bokulich et al. 2015.
So what I tried to do was to download the data and try to get as closer to the expect abundance as possible. The reason that I think I'm doing something wrong is because the provided expected abundance file shows that all the genera of the source have been identified with quite accurate abundances, but my results are quite off. I have been trying to understand the reason but with no luck so far.

Either I am still misunderstanding, or there is no misunderstanding. By "replicate", you mean that you are attempting to analyze the mock-2 data and detect the expected genera at the expected abundances. Correct?
I think I have identified the source of confusion. It looks like you are interpreting the greengenes_13_8_99 expected taxonomy abundance to be the abundances observed after analysis. These are in fact just the source taxonomies reformatted to have labels that are consistent with the Greengenes 13_8 99% OTUs taxonomy, not the product of any type of analysis. That is why the expected abundances are so close to the source — they are the source, except that some source taxonomies may be "collapsed" together into a single expected taxonomy where, e.g., the species labels do not exist in the Greengenes taxonomy.
Does that make sense?
So I think you are actually doing everything correctly and your "found" abundances actually look quite good.
For example, by looking at either the 2015 or 2017 preprints, you will see that none of the methods actually have 100% accuracy at species level for mock communities — this is because the taxon abundances are always skewed during sample handling/PCR/sequencing, and no bioinformatic analysis can really correct this perfectly. Genus-level classification are actually quite a lot better but still not perfect for this same reason.

During my trials my conclusions on parameters were in congruence with yours in 2015 preprint. It was just that "greengenes_13_8_99 expected taxonomy abundance" file that was driving me nuts.
Thank you very much for your time and explanation.


Earthdawn (FASA) v320

Submission Checklist
Required

[x] The pull request title clearly contains the name of the sheet I am editing.
[x] The pull request title clearly states the type of change I am submitting (New Sheet/New Feature/Bugfix/etc.).
[x] The pull request makes changes to files in only one sub-folder.
[x] The pull request does not contain changes to any json files in the translations folder (translation.json is permitted)

New Sheet Details

The name of this game is: <   >  (i.e. Dungeons & Dragons 5th Edition, The Dresden Files RPG)

The publisher of this game is: <   > (i.e. Wizards of the Coast, Evil Hat)

The name of this game system/family is: <   > (i.e. Dungeons & Dragons, FATE)

[ ] I have followed the Character Sheets Standards when building this sheet.

[ ] This sheet has been made on behalf of, or by, the game's publisher.
[ ] This game is not a traditionally published game, but a copy of the game rules can be purchased/downloaded/found at: <   >
[ ] This sheet is for an unofficial fan game, modification to an existing game, or a homebrew system.

Changes / Description

Character Sheet Info Roll20 Internal Use only.

Hey @Jiboux ,
Sorry for the delay on this one.  Looks like you've got CRLF line endings on Earthdawn.css - once you swap that to LF, this is good to go.

Done, I don't know why my editor keeps getting back to CRLF.


🐞 - updater is not a function

Which @taiga-ui/* package(s) are the source of the bug?
Don't known / other
Please provide a link to a minimal reproduction of the bug
https://stackblitz.com/edit/taiga-starter
Is this issue blocking you?
Blocking
Description
While adding taiga-ui to my app project, I receive an updater is not a function error which does not let me continue with installation.
λ ng version

     _                      _                 ____ _     ___
    / \   _ __   __ _ _   _| | __ _ _ __     / ___| |   |_ _|
   / △ \ | '_ \ / _` | | | | |/ _` | '__|   | |   | |    | |
  / ___ \| | | | (_| | |_| | | (_| | |      | |___| |___ | |
 /_/   \_\_| |_|\__, |\__,_|_|\__,_|_|       \____|_____|___|
                |___/

Angular CLI: 14.0.1
Node: 16.15.0
Package Manager: npm 8.5.5
OS: win32 x64

Angular: 14.0.1
... animations, cdk, cli, common, compiler, compiler-cli, core
... forms, material, material-moment-adapter, platform-browser
... platform-browser-dynamic, router

Package                         Version
---------------------------------------------------------
@angular-devkit/architect       0.1400.1
@angular-devkit/build-angular   14.0.1
@angular-devkit/core            14.0.1
@angular-devkit/schematics      14.0.1
@schematics/angular             14.0.1
rxjs                            7.5.5
typescript                      4.7.3

λ ng add taiga-ui
Skipping installation: Package already installed
? Do you want to use Taiga UI dialogs? Yes
? Do you plan on using custom SVGs/icons or addon-editor? If `Yes` we will include ng-dompurify as sanitizer, read more: https://taiga-ui.dev/icon-set#sanitizer Yes
? Do you want to use Taiga UI alerts? Yes
? Choose additional packages to install addon-charts      Components for various charts, graphs and visualizations, addon-commerce    Money-related extension with currencies, credit card
inputs and validators, addon-mobile      Components and tools specific to mobile version of the app, addon-table       Interactive table component and related utilities, addon-tablebars
Group action sliding toolbar, addon-editor      Rich text editor extension with related components, addon preview     Custom fullscreen dialog to preview various content such as documents,
images etc.
    The main packages will be installed - core,cdk,kit,icons
UPDATE package.json (2052 bytes)
updater is not a function

Angular version
14.0.1
Taiga UI version
2.48.0
Which browsers have you used?

[X] Chrome
[ ] Firefox
[ ] Safari
[ ] Edge

Which operating systems have you used?

[ ] macOS
[X] Windows
[ ] Linux
[ ] iOS
[ ] Android

Same issue for me


empty vcf/stderr/stdout

Hi, I got all files empty after 48h running for 130* draft genome, version is 0.10.1. Here is all  the commands:
$nanopolish index -d fast5_files/1 -d fast5_file/2 -s summary1.txt  -s summary2.txt filtered_albacore_reads.fastq
num reads: 1407668, num reads with path to fast5: 1407668, output 4 files
$minimap2 -ax map-ont -t 8 draft.fa filtered_albacore_reads.fastq | samtools sort -o reads.sorted.bam
samtools index reads.sorted.bam
$python ~/nanopolish/scripts/nanopolish_makerange.py draft.fa | parallel --results nanopolish.results -P 8 \ ~/nanopolish/nanopolish variants --consensus -o polished.{1}.vcf -w {1}
-r filtered_albacore_reads.fastq -b reads.sorted.bam -g draft.fa -t 8 --min-candidate-frequency 0.1 --methylation-aware=cpg  --max-haplotypes 1000000
all vcf/stderr/stdout are empty so far, and it only has warning even tough set 1m max-haplotypes
28 variants in span [9 87]
Number of variants in span (28) would exceed max-haplotypes. Variants may be missed. Consider running with a higher value of max-haplotypes!
Do you have any suggestion?
Best,
panpan

I don't suggest running with --max-haplotypes 1000000, it will make calling extremely slow. You can just ignore those warnings.
Jared

Hi Jared, thank you for your suggestion. I also reduced P that to polish 2 segments at once,  finally got something in one vcf. But do you suggest any command to speed up CPU time?

Dear Jared, it have taken 12 days so far and just outputed vcf files for 3.5 contigs in the cluster of 1 node, 12 threads. I am afraid to I need to terminate it because we have 60 contigs in this genome and other 12 candidate genomes to polish. i guess --faster option will still consume long time, shall i give up nanopolish or do you have better suggestion?

What command did you run? What sequencing depth do you have?

For reference on my system it takes ~5minutes to polish each 50kb segment, so there is something unusual going on with your dataset. What program generated the draft assembly?

How large is the genome expected to be?

130M,  it took ~2h for a 50k segment in this dataset.

130x coverage for a estimated 130Mbp genome

That is quite a large genome, I don't think it is practical to polish it using a single 12-core server. Greater than 12 days of runtime is not unexpected.

It is possible that smrtdenovo does not work well for nanopore reads, so the initial consensus accuracy is low and nanopolish needs to do a lot of extra work. Are you able to estimate the accuracy of the draft assembly? Have you tried running canu instead?

Thank you, I will try it in serval nodes, and check the 50k polish time for canu-assembled genome.

OK, let me know how it goes.

Hi, the average identity for this genome is 93% calculated by mummer dnadiff, so I think it is not that bad, but the N50 of canu assembled genome is 40% less than it.

93% is too low for nanopolish, it expects the input to be >98%. This is why it is running slowly. Maybe you can try running racon on the assembly before nanopolish.


Codicons used in screenshot

Was wondering if it would be possible to have a list of the codicons you have in the README's screenshot alongside with the font necessary for them.

The font can be grabbed from here https://github.com/microsoft/vscode-codicons/blob/main/dist/codicon.ttf
Though setting  it `preset = 'codicons' gives a weird result.

@onsails do we need to update in built preset mapping for it?

Not repo author, but there are three steps:-

Download codicon from here and install it.

If on linux, check font name using fc-list | grep -i codicon. It would be codicon (notice it is not plural).

Setup lspkind

lua require('lspkind').init({ preset = 'codicons' })

If you are using nvim-cmp, an additional step is needed. Add this to cmp.setup
  formatting = {
    format = require'lspkind'.cmp_format({
      mode = 'symbol',
      maxwidth = 50,
    })
  }

Now the hard part. Your terminal emulator must be able to use codicon symbols as the fallback or it should give you an option to override few (unicode) chars with other font. Here's what looks like for kitty term:

https://github.com/ajitid/dotfiles/blob/2fb58488b07789b846a530c7edc79754bcea3fc2/kitty/.config/kitty/kitty.conf#L69
Once you make these changes, reopen your terminal, open nvim and then try checking if it works.


django-hijack 3.0.0 is not compatible with latest release tag (2.1.10)

While integrating it with Django==3.2, I started to get error because the settings files have been remove from django and put in conf.py
Traceback (most recent call last):

  File "/src/manage.py", line 19, in <module>

    execute_from_command_line(sys.argv)

  File "/home/mitodl/.local/lib/python3.9/site-packages/django/core/management/__init__.py", line 419, in execute_from_command_line

    utility.execute()

  File "/home/mitodl/.local/lib/python3.9/site-packages/django/core/management/__init__.py", line 395, in execute

    django.setup()

  File "/home/mitodl/.local/lib/python3.9/site-packages/django/__init__.py", line 24, in setup

    apps.populate(settings.INSTALLED_APPS)

  File "/home/mitodl/.local/lib/python3.9/site-packages/django/apps/registry.py", line 122, in populate

    app_config.ready()

  File "/home/mitodl/.local/lib/python3.9/site-packages/django/contrib/admin/apps.py", line 27, in ready

    self.module.autodiscover()

  File "/home/mitodl/.local/lib/python3.9/site-packages/django/contrib/admin/__init__.py", line 24, in autodiscover

    autodiscover_modules('admin', register_to=site)

  File "/home/mitodl/.local/lib/python3.9/site-packages/django/utils/module_loading.py", line 47, in autodiscover_modules

    import_module('%s.%s' % (app_config.name, module_to_search))

  File "/usr/local/lib/python3.9/importlib/__init__.py", line 127, in import_module

    return _bootstrap._gcd_import(name[level:], package, level)

  File "<frozen importlib._bootstrap>", line 1030, in _gcd_import

  File "<frozen importlib._bootstrap>", line 1007, in _find_and_load

  File "<frozen importlib._bootstrap>", line 986, in _find_and_load_unlocked

  File "<frozen importlib._bootstrap>", line 680, in _load_unlocked

  File "<frozen importlib._bootstrap_external>", line 850, in exec_module

  File "<frozen importlib._bootstrap>", line 228, in _call_with_frames_removed

  File "/src/users/admin.py", line 5, in <module>

    from hijack_admin.admin import HijackUserAdminMixin

  File "/usr/local/lib/python3.9/site-packages/hijack_admin/admin.py", line 9, in <module>

    from hijack import settings as hijack_settings

ImportError: cannot import name 'settings' from 'hijack' (/home/mitodl/.local/lib/python3.9/site-packages/hijack/__init__.py)

Confirmed. Suggest title: "django-hijack-admin release tag 2.1.10 not compatible with django-hijack v. 3.x"
hijack_admin.admin contains this import statement:
from hijack import settings as hijack_settings
But hijack.settings no longer exists.
I'd be happy to have a crack at updating hijack_admin for compatibility with hijack V.3.x  if no one else is already at that task?

Will anyone be fixing this bug?


deserializers break when using with immutables

https://github.com/immutables/immutables/issues/461
@jonpeterson I'm trying to hunt this issue down and I'm stumped a bit.
Let me know if you have any ideas.
@Immutable
@JsonSerialize(as = ImmutableEntity.class)
@JsonDeserialize(as = ImmutableEntity.class)
@JsonInclude(JsonInclude.Include.NON_NULL)
@JsonVersionedModel(
        currentVersion = "1",
        defaultDeserializeToVersion = "0",
        versionToSuppressPropertySerialization = "0",
        toCurrentConverterClass = EntityCurrentConverter.class,
        toPastConverterClass = EntityPastConverter.class
)
@Value.Style(additionalJsonAnnotations = {JsonVersionedModel.class})
public interface Entity {

    int MIN_LEN_ANOTHER_FIELD = 2;
    int MAX_LEN_ANOTHER_FIELD = 10;

    @JsonSerializeToVersion(defaultToSource = true)
    @Nullable
    String getSerializeToVersion();

    /**
     * @return The field
     */
    String field();

    /**
     * @return another field
     */
    @Size(min = MIN_LEN_ANOTHER_FIELD, max = MAX_LEN_ANOTHER_FIELD)
    String getAnotherField();
}

Essentially using jackson to deserialize a string like:
        ObjectMapper m = new ObjectMapper();
        m.registerModule(new VersioningModule());

        String json
                = "{\"field\":\"f\",\"anotherField\":\"a\",\"modelVersion\":\"1\"}";

        Entity pe = m.readValue(json, Entity.class);

Winds up causing issues because VersionedModelDeserializer.deserialize() gets called twice and the modelVersion is removed in the 2nd pass making it seem as if the modelVersion should be "0" when it should be "1".
Thoughts?

Found a way around this by writing a custom deserializer.  I'm going to put in a new PR which allows us to extend this module so it works with immutables without needing to change this project.  See https://github.com/immutables/immutables/issues/461 for more details.

Merged and released to Maven Central as 1.2.2.  Thanks.


Refactored and redid backend

This PR has 0 flake8 errors.
Backend now uses aliases to handle keyword differences in routines and the model.
For example, a routine or build might reference a network "a_net", but this reference is only useful in the context of the routine or build. The model owns a dictionary of all the networks, and the routine simply has an alias (can be thought of a sort of pointer) to that network. That way, the routine can reference "a_net" without knowing how the model is using it.
Updated classifier, gan, vae, and ali to follow this framework.
Cleaned up code and fixed some small errors.
Cleaned up noise.py
Removed global network handler.
Now, routines and builds "own" their kwargs and help. These are containers of aliases which point to the model kwargs and help.
All models "train" correctly, but no tests are implemented. This is the next step.
cortex-config does not work (this script is not yet compatible with cortex.)
Note / TODO:
The interface for building models works, but it can be tricky to debug. This needs to be stressed tested as well as include more informative errors.

Review away

@ReyhaneAskari can we test travis integration on this PR?

@rdevon yes we should. @joeljpoulin should be working on this.

Test suites are too heavy to implement it all in 1 PR. A project card as been open to plan. Basic Flake8  has been run and corrected, ignoring E901 errors. The PR should be merge soon to avoid conflicts.

@joeljpoulin
https://travis-ci.com/rdevon/cortex2.0/builds/76582242
This is apparently because there is no "script" entry in .travis.yml. How to fix?

Why do we have so many CIs?

@rdevon

This is apparently because there is no "script" entry in .travis.yml. How to fix?
Attributing it as a script and not before_script.
Changes have been made to add tox in Travis-CI pipeline.

The build passed, but I'm not sure that it actually ran correctly the tox. I will change it to make it compatible only with Flake8 for now.


Defaults - use list view not card view

By default, the cards view is shown on the home screen [1]  and requests screen [2].  Unfortunately, in his view text ends up all over the place and makes things hard to compare.
While it may be possible to fix this, I'd suggest that the row view [3] doesn't have this issue and suggest using it as the default instead.
Home screen on first open [1]

Requests screen on first open [2]

Row view of requests screen [3]

This is a nice suggestion. I think it would also be nice to also have links on the request page that allow the user to go directly from the requests row page to the Request SQL or Request Profile pages.
Happy to create an MR if there is any interest updating the project on the frontend. Let me know!