Developer installation

Description
Running pip install -e '.[dev]' does not install all packages required for a full development cycle. For example, any modules related to testing are not installed.
IMO, a developer installation should allow running the entire codebase as well as unit tests without having to install additional libraries. What do you think @Marius1311, @michalk8?

It installs all the necessary things - tox and pre-commit (the latter is just for convenience of not running tox -e lint), think it's fine as it is.

It installs all the necessary things - tox and pre-commit (the latter is just for convenience of not running tox -e lint), think it's fine as it is.

Running
pip install -e '.[dev]'
pre-commit install
tox -e py38-linux

failed for me since, e.g., pytest wasn't installed.

Thanks for catching this, indeed, the required packages are not listed in tox.ini, will fix it soon.

Thanks for catching this, indeed, the required packages are not listed in tox.ini, will fix it soon.

Hmm, upon further inspection, it seems correct, the test requirements are still in setup.py and also used in tox.ini. Furthermore, I wasn't able to reproduce this or the warning in #627 (let's move the discussion here).

@Marius1311 can you reproduce on your Mac?

I'll check this out, however, it's a bit tight before the release - I'll look into it afterwards, we can exclude this from the release.

Is this still an issue?

Is this still an issue?

Did you try locally on your machine with a fresh conda environment whether you get the same issues as mentioned above? If yes, let's discuss tomorrow.

I tried:

created new conda environment with python 3.8
install cellrank: pip install -e '.[dev]'
install pre-commit: pre-commit install
run tox: tox

See below for the output I got. Is this what you guys wanted me to run?
(test_cr_dev) ➜  cellrank git:(dev) tox
covclean create: /Users/marius/Projects/cellrank/.tox/covclean
covclean installdeps: coverage
covclean installed: coverage==5.5
covclean run-test-pre: PYTHONHASHSEED='3393242636'
covclean run-test: commands[0] | coverage erase
lint create: /Users/marius/Projects/cellrank/.tox/lint
lint installdeps: pre-commit>=2.9.3
lint installed: appdirs==1.4.4,cfgv==3.3.0,distlib==0.3.2,filelock==3.0.12,identify==2.2.10,nodeenv==1.6.0,pre-commit==2.13.0,PyYAML==5.4.1,six==1.16.0,toml==0.10.2,virtualenv==20.4.7
lint run-test-pre: PYTHONHASHSEED='3393242636'
lint run-test: commands[0] | pre-commit run --all-files --show-diff-on-failure
black....................................................................Passed
isort....................................................................Passed
Strip unnecessary `# noqa`s..............................................Passed
Pretty format YAML.......................................................Passed
Detect Private Key.......................................................Passed
Check for merge conflicts................................................Passed
Check python ast.........................................................Passed
Check for broken symlinks............................(no files to check)Skipped
Check for added large files..............................................Passed
Check that executables have shebangs.....................................Passed
Fix python encoding pragma...............................................Passed
Fix End of Files.........................................................Passed
Mixed line ending........................................................Passed
Trim Trailing Whitespace.................................................Passed
Check for case conflicts.................................................Passed
Check docstring is first.................................................Passed
Check Yaml...............................................................Passed
Check Toml...............................................................Passed
Fix requirements.txt.....................................................Passed
autoflake................................................................Passed
flake8...................................................................Passed
Check executable files use .sh extension.................................Passed
rstcheck.................................................................Passed
blacken-docs.............................................................Passed
pyupgrade................................................................Passed
check for eval().........................................................Passed
type annotations not comments............................................Passed
rst ``code`` is two backticks............................................Passed
rst directives end with two colons.......................................Passed
rst ``inline code`` next to normal text..................................Passed
doc8.....................................................................Passed
py37-macos create: /Users/marius/Projects/cellrank/.tox/py37-macos
py37-macos installdeps: adjustText
ERROR: invocation failed (exit code 1), logfile: /Users/marius/Projects/cellrank/.tox/py37-macos/log/py37-macos-1.log
============================================== log start ==============================================
WARNING: pip is configured with locations that require TLS/SSL, however the ssl module in Python is not available.
WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError("Can't connect to HTTPS URL because the SSL module is not available.")': /simple/adjusttext/
WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError("Can't connect to HTTPS URL because the SSL module is not available.")': /simple/adjusttext/
WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError("Can't connect to HTTPS URL because the SSL module is not available.")': /simple/adjusttext/
WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError("Can't connect to HTTPS URL because the SSL module is not available.")': /simple/adjusttext/
WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError("Can't connect to HTTPS URL because the SSL module is not available.")': /simple/adjusttext/
Could not fetch URL https://pypi.org/simple/adjusttext/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='pypi.org', port=443): Max retries exceeded with url: /simple/adjusttext/ (Caused by SSLError("Can't connect to HTTPS URL because the SSL module is not available.")) - skipping
ERROR: Could not find a version that satisfies the requirement adjustText (from versions: none)
ERROR: No matching distribution found for adjustText
WARNING: pip is configured with locations that require TLS/SSL, however the ssl module in Python is not available.
Could not fetch URL https://pypi.org/simple/pip/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='pypi.org', port=443): Max retries exceeded with url: /simple/pip/ (Caused by SSLError("Can't connect to HTTPS URL because the SSL module is not available.")) - skipping

=============================================== log end ===============================================
ERROR: could not install deps [adjustText]; v = InvocationError('/Users/marius/Projects/cellrank/.tox/py37-macos/bin/python -m pip install adjustText', 1)
py38-macos create: /Users/marius/Projects/cellrank/.tox/py38-macos
py38-macos installdeps: adjustText
py38-macos develop-inst: /Users/marius/Projects/cellrank
ERROR: invocation failed (exit code 1), logfile: /Users/marius/Projects/cellrank/.tox/py38-macos/log/py38-macos-2.log
============================================== log start ==============================================
Obtaining file:///Users/marius/Projects/cellrank
  Installing build dependencies: started
  Installing build dependencies: finished with status 'done'
  Getting requirements to build wheel: started
  Getting requirements to build wheel: finished with status 'done'
    Preparing wheel metadata: started
    Preparing wheel metadata: finished with status 'done'
Collecting pandas>=1.2.0
  Using cached pandas-1.2.5-cp38-cp38-macosx_10_9_x86_64.whl (10.5 MB)
Collecting scvelo>=0.2.3
  Using cached scvelo-0.2.3-py3-none-any.whl (177 kB)
Collecting scipy>=1.2.0
  Using cached scipy-1.7.0-cp38-cp38-macosx_10_9_x86_64.whl (31.9 MB)
Requirement already satisfied: numpy>=1.2.0 in ./.tox/py38-macos/lib/python3.8/site-packages (from cellrank==1.3.2.dev73+ge5c6191) (1.21.0)
Collecting seaborn>=0.10.0
  Using cached seaborn-0.11.1-py3-none-any.whl (285 kB)
Collecting joblib>=0.13.1
  Using cached joblib-1.0.1-py3-none-any.whl (303 kB)
Requirement already satisfied: setuptools>=41.0.1 in ./.tox/py38-macos/lib/python3.8/site-packages (from cellrank==1.3.2.dev73+ge5c6191) (57.0.0)
Collecting wrapt>=1.12.1
  Using cached wrapt-1.12.1-cp38-cp38-macosx_10_9_x86_64.whl
Requirement already satisfied: matplotlib>=3.3.0 in ./.tox/py38-macos/lib/python3.8/site-packages (from cellrank==1.3.2.dev73+ge5c6191) (3.4.2)
Collecting pygpcca>=1.0.2
  Using cached pygpcca-1.0.2-py3-none-any.whl (68 kB)
Collecting typing-extensions
  Using cached typing_extensions-<IP_ADDRESS>-py3-none-any.whl (26 kB)
Collecting scanpy>=1.7.2
  Using cached scanpy-1.8.0-py3-none-any.whl (11.3 MB)
Collecting docrep>=0.3.0
  Using cached docrep-0.3.2-py3-none-any.whl
Collecting scikit-learn>=0.24.0
  Using cached scikit_learn-0.24.2-cp38-cp38-macosx_10_13_x86_64.whl (7.2 MB)
Collecting networkx>=2.2
  Using cached networkx-2.5.1-py3-none-any.whl (1.6 MB)
Collecting numba<0.53.0,>=0.51.0
  Using cached numba-0.52.0-cp38-cp38-macosx_10_14_x86_64.whl (2.2 MB)
Collecting pygam>=0.8.0
  Using cached pygam-0.8.0-py2.py3-none-any.whl (1.8 MB)
Collecting python-igraph
  Downloading python_igraph-0.9.6-cp38-cp38-macosx_10_9_x86_64.whl (2.0 MB)
Collecting leidenalg
  Using cached leidenalg-0.8.4-cp38-cp38-macosx_10_9_x86_64.whl (230 kB)
Collecting pytest-cov
  Downloading pytest_cov-2.12.1-py2.py3-none-any.whl (20 kB)
Collecting jaxlib
  Downloading jaxlib-0.1.68-cp38-none-macosx_10_9_x86_64.whl (44.1 MB)
Requirement already satisfied: Pillow in ./.tox/py38-macos/lib/python3.8/site-packages (from cellrank==1.3.2.dev73+ge5c6191) (8.3.0)
Collecting jax
  Downloading jax-0.2.16.tar.gz (680 kB)
Collecting bezier
  Using cached bezier-2021.2.12-cp38-cp38-macosx_10_9_x86_64.whl (1.7 MB)
Collecting pytest-xdist>=2.1.0
  Downloading pytest_xdist-2.3.0-py3-none-any.whl (37 kB)
Collecting filelock
  Using cached filelock-3.0.12-py3-none-any.whl (7.6 kB)
Collecting pytest-mock>=3.5.1
  Downloading pytest_mock-3.6.1-py3-none-any.whl (12 kB)
Collecting louvain!=0.6.2,>=0.6
  Using cached louvain-0.7.0-cp38-cp38-macosx_10_9_x86_64.whl (736 kB)
Collecting pytest>=6.1.1
  Downloading pytest-6.2.4-py3-none-any.whl (280 kB)
Collecting statot>=0.0.14
  Downloading statot-0.0.14-py3-none-any.whl (11 kB)
Collecting wot
  Downloading wot-1.0.8.post2-py2.py3-none-any.whl (60 kB)
Collecting POT
  Using cached POT-0.7.0-cp38-cp38-macosx_10_9_x86_64.whl (146 kB)
Requirement already satisfied: six in ./.tox/py38-macos/lib/python3.8/site-packages (from docrep>=0.3.0->cellrank==1.3.2.dev73+ge5c6191) (1.16.0)
Requirement already satisfied: cycler>=0.10 in ./.tox/py38-macos/lib/python3.8/site-packages (from matplotlib>=3.3.0->cellrank==1.3.2.dev73+ge5c6191) (0.10.0)
Requirement already satisfied: python-dateutil>=2.7 in ./.tox/py38-macos/lib/python3.8/site-packages (from matplotlib>=3.3.0->cellrank==1.3.2.dev73+ge5c6191) (2.8.1)
Requirement already satisfied: kiwisolver>=1.0.1 in ./.tox/py38-macos/lib/python3.8/site-packages (from matplotlib>=3.3.0->cellrank==1.3.2.dev73+ge5c6191) (1.3.1)
Requirement already satisfied: pyparsing>=2.2.1 in ./.tox/py38-macos/lib/python3.8/site-packages (from matplotlib>=3.3.0->cellrank==1.3.2.dev73+ge5c6191) (2.4.7)
Collecting decorator<5,>=4.3
  Using cached decorator-4.4.2-py2.py3-none-any.whl (9.2 kB)
Collecting llvmlite<0.36,>=0.35.0
  Using cached llvmlite-0.35.0-cp38-cp38-macosx_10_9_x86_64.whl (18.5 MB)
Collecting pytz>=2017.3
  Using cached pytz-2021.1-py2.py3-none-any.whl (510 kB)
Collecting future
  Using cached future-0.18.2-py3-none-any.whl
Collecting progressbar2
  Using cached progressbar2-3.53.1-py2.py3-none-any.whl (25 kB)
Collecting py>=1.8.2
  Using cached py-1.10.0-py2.py3-none-any.whl (97 kB)
Collecting pluggy<1.0.0a1,>=0.12
  Using cached pluggy-0.13.1-py2.py3-none-any.whl (18 kB)
Collecting packaging
  Using cached packaging-20.9-py2.py3-none-any.whl (40 kB)
Collecting iniconfig
  Using cached iniconfig-1.1.1-py2.py3-none-any.whl (5.0 kB)
Collecting toml
  Using cached toml-0.10.2-py2.py3-none-any.whl (16 kB)
Collecting attrs>=19.2.0
  Using cached attrs-21.2.0-py2.py3-none-any.whl (53 kB)
Collecting pytest-forked
  Using cached pytest_forked-1.3.0-py2.py3-none-any.whl (4.7 kB)
Collecting execnet>=1.1
  Downloading execnet-1.9.0-py2.py3-none-any.whl (39 kB)
Collecting texttable>=1.6.2
  Using cached texttable-1.6.3-py2.py3-none-any.whl (10 kB)
Collecting patsy
  Using cached patsy-0.5.1-py2.py3-none-any.whl (231 kB)
Collecting h5py>=2.10.0
  Using cached h5py-3.3.0-cp38-cp38-macosx_10_9_x86_64.whl (2.9 MB)
Collecting legacy-api-wrap
  Using cached legacy_api_wrap-1.2-py3-none-any.whl (37 kB)
Collecting natsort
  Using cached natsort-7.1.1-py3-none-any.whl (35 kB)
Collecting anndata>=0.7.4
  Using cached anndata-0.7.6-py3-none-any.whl (127 kB)
Collecting umap-learn>=0.3.10
  Using cached umap-learn-0.5.1.tar.gz (80 kB)
Collecting tqdm
  Using cached tqdm-4.61.1-py2.py3-none-any.whl (75 kB)
Collecting sinfo
  Using cached sinfo-0.3.4-py3-none-any.whl
Collecting statsmodels>=0.10.0rc2
  Using cached statsmodels-0.12.2-cp38-cp38-macosx_10_15_x86_64.whl (9.5 MB)
Collecting tables
  Using cached tables-3.6.1-cp38-cp38-macosx_10_9_x86_64.whl (4.3 MB)
Collecting xlrd<2.0
  Using cached xlrd-1.2.0-py2.py3-none-any.whl (103 kB)
Collecting threadpoolctl>=2.0.0
  Using cached threadpoolctl-2.1.0-py3-none-any.whl (12 kB)
Collecting umap-learn>=0.3.10
  Using cached umap_learn-0.4.6-py3-none-any.whl
Collecting loompy>=2.0.12
  Using cached loompy-3.0.6-py3-none-any.whl
Collecting click
  Using cached click-8.0.1-py3-none-any.whl (97 kB)
Collecting numpy-groupies
  Using cached numpy_groupies-0.9.13-py3-none-any.whl
Collecting absl-py
  Downloading absl_py-0.13.0-py3-none-any.whl (132 kB)
Collecting opt_einsum
  Downloading opt_einsum-3.3.0-py3-none-any.whl (65 kB)
Collecting flatbuffers<3.0,>=1.12
  Downloading flatbuffers-2.0-py2.py3-none-any.whl (26 kB)
Collecting get-version>=2.0.4
  Using cached get_version-3.2-py3-none-any.whl (16 kB)
Collecting dunamai
  Using cached dunamai-1.5.5-py3-none-any.whl (16 kB)
Collecting cython>=0.23
  Downloading Cython-0.29.23-cp38-cp38-macosx_10_9_x86_64.whl (1.9 MB)
Collecting python-utils>=2.3.0
  Using cached python_utils-2.5.6-py2.py3-none-any.whl (12 kB)
Collecting slepc4py<3.14,>=3.13
  Downloading slepc4py-3.13.0.tar.gz (815 kB)
Collecting mpi4py<3.1,>=3.0.3
  Downloading mpi4py-3.0.3.tar.gz (1.4 MB)
Collecting petsc4py<3.14,>=3.13
  Downloading petsc4py-3.13.0.tar.gz (1.9 MB)
Collecting petsc<3.14,>=3.13
  Downloading petsc-3.13.5.tar.gz (14.9 MB)
Collecting slepc<3.14,>=3.13
  Downloading slepc-3.13.2.tar.gz (4.8 MB)
Collecting coverage>=5.2.1
  Using cached coverage-5.5-cp38-cp38-macosx_10_9_x86_64.whl (207 kB)
Collecting stdlib-list
  Using cached stdlib_list-0.8.0-py3-none-any.whl (63 kB)
Collecting numexpr>=2.6.2
  Using cached numexpr-2.7.3-cp38-cp38-macosx_10_9_x86_64.whl (99 kB)
Building wheels for collected packages: jax, mpi4py, petsc, petsc4py, slepc, slepc4py
  Building wheel for jax (setup.py): started
  Building wheel for jax (setup.py): finished with status 'done'
  Created wheel for jax: filename=jax-0.2.16-py3-none-any.whl size=784392 sha256=779d82a6cb7ed2e81a428730e627f419413b0680908a0d674368f40cb24bea69
  Stored in directory: /Users/marius/Library/Caches/pip/wheels/1d/bd/78/aaa554c33eb6d6e44454fdddbddb67c74a4455f648f1cdedb7
  Building wheel for mpi4py (setup.py): started
  Building wheel for mpi4py (setup.py): finished with status 'error'
  ERROR: Command errored out with exit status 1:
   command: /Users/marius/Projects/cellrank/.tox/py38-macos/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/mx/0hyv8t2s26jdj79f55kvc_b80000gn/T/pip-install-0c7ialkz/mpi4py_13644ce5c597452fad3b5d585147c818/setup.py'"'"'; __file__='"'"'/private/var/folders/mx/0hyv8t2s26jdj79f55kvc_b80000gn/T/pip-install-0c7ialkz/mpi4py_13644ce5c597452fad3b5d585147c818/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /private/var/folders/mx/0hyv8t2s26jdj79f55kvc_b80000gn/T/pip-wheel-qsdjfr8v
       cwd: /private/var/folders/mx/0hyv8t2s26jdj79f55kvc_b80000gn/T/pip-install-0c7ialkz/mpi4py_13644ce5c597452fad3b5d585147c818/
  Complete output (162 lines):
  running bdist_wheel
  running build
  running build_src
  running build_py
  creating build
  creating build/lib.macosx-10.9-x86_64-3.8
  creating build/lib.macosx-10.9-x86_64-3.8/mpi4py
  copying src/mpi4py/run.py -> build/lib.macosx-10.9-x86_64-3.8/mpi4py
  copying src/mpi4py/__init__.py -> build/lib.macosx-10.9-x86_64-3.8/mpi4py
  copying src/mpi4py/bench.py -> build/lib.macosx-10.9-x86_64-3.8/mpi4py
  copying src/mpi4py/__main__.py -> build/lib.macosx-10.9-x86_64-3.8/mpi4py
  creating build/lib.macosx-10.9-x86_64-3.8/mpi4py/futures
  copying src/mpi4py/futures/_base.py -> build/lib.macosx-10.9-x86_64-3.8/mpi4py/futures
  copying src/mpi4py/futures/server.py -> build/lib.macosx-10.9-x86_64-3.8/mpi4py/futures
  copying src/mpi4py/futures/__init__.py -> build/lib.macosx-10.9-x86_64-3.8/mpi4py/futures
  copying src/mpi4py/futures/pool.py -> build/lib.macosx-10.9-x86_64-3.8/mpi4py/futures
  copying src/mpi4py/futures/aplus.py -> build/lib.macosx-10.9-x86_64-3.8/mpi4py/futures
  copying src/mpi4py/futures/__main__.py -> build/lib.macosx-10.9-x86_64-3.8/mpi4py/futures
  copying src/mpi4py/futures/_lib.py -> build/lib.macosx-10.9-x86_64-3.8/mpi4py/futures
  copying src/mpi4py/__init__.pxd -> build/lib.macosx-10.9-x86_64-3.8/mpi4py
  copying src/mpi4py/libmpi.pxd -> build/lib.macosx-10.9-x86_64-3.8/mpi4py
  copying src/mpi4py/MPI.pxd -> build/lib.macosx-10.9-x86_64-3.8/mpi4py
  creating build/lib.macosx-10.9-x86_64-3.8/mpi4py/include
  creating build/lib.macosx-10.9-x86_64-3.8/mpi4py/include/mpi4py
  copying src/mpi4py/include/mpi4py/mpi4py.MPI.h -> build/lib.macosx-10.9-x86_64-3.8/mpi4py/include/mpi4py
  copying src/mpi4py/include/mpi4py/mpi4py.MPI_api.h -> build/lib.macosx-10.9-x86_64-3.8/mpi4py/include/mpi4py
  copying src/mpi4py/include/mpi4py/mpi4py.h -> build/lib.macosx-10.9-x86_64-3.8/mpi4py/include/mpi4py
  copying src/mpi4py/include/mpi4py/mpi4py.i -> build/lib.macosx-10.9-x86_64-3.8/mpi4py/include/mpi4py
  copying src/mpi4py/include/mpi4py/mpi.pxi -> build/lib.macosx-10.9-x86_64-3.8/mpi4py/include/mpi4py
  running build_clib
  MPI configuration: [mpi] from 'mpi.cfg'
  MPI C compiler:    /usr/local/Cellar/mpich/3.3.2/bin/mpicc
  MPI C++ compiler:  /usr/local/Cellar/mpich/3.3.2/bin/mpicxx
  MPI F compiler:    /usr/local/Cellar/mpich/3.3.2/bin/mpifort
  MPI F90 compiler:  /usr/local/Cellar/mpich/3.3.2/bin/mpif90
  MPI F77 compiler:  /usr/local/Cellar/mpich/3.3.2/bin/mpif77
  checking for library 'lmpe' ...
  /usr/local/Cellar/mpich/3.3.2/bin/mpicc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/marius/miniconda3/envs/test_cr_dev/include -arch x86_64 -I/Users/marius/miniconda3/envs/test_cr_dev/include -arch x86_64 -c _configtest.c -o _configtest.o
  /usr/local/Cellar/mpich/3.3.2/bin/mpicc -flat_namespace -undefined suppress -arch x86_64 _configtest.o -llmpe -o _configtest
  ld: library not found for -llmpe
  clang: error: linker command failed with exit code 1 (use -v to see invocation)
  failure.
  removing: _configtest.c _configtest.o
  building 'mpe' dylib library
  creating build/temp.macosx-10.9-x86_64-3.8
  creating build/temp.macosx-10.9-x86_64-3.8/src
  creating build/temp.macosx-10.9-x86_64-3.8/src/lib-pmpi
  /usr/local/Cellar/mpich/3.3.2/bin/mpicc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/marius/miniconda3/envs/test_cr_dev/include -arch x86_64 -I/Users/marius/miniconda3/envs/test_cr_dev/include -arch x86_64 -c src/lib-pmpi/mpe.c -o build/temp.macosx-10.9-x86_64-3.8/src/lib-pmpi/mpe.o
  creating build/lib.macosx-10.9-x86_64-3.8/mpi4py/lib-pmpi
  /usr/local/Cellar/mpich/3.3.2/bin/mpicc -shared -undefined dynamic_lookup -L/Users/marius/miniconda3/envs/test_cr_dev/lib -arch x86_64 -L/Users/marius/miniconda3/envs/test_cr_dev/lib -arch x86_64 -arch x86_64 -install_name libmpe.dylib build/temp.macosx-10.9-x86_64-3.8/src/lib-pmpi/mpe.o -o build/lib.macosx-10.9-x86_64-3.8/mpi4py/lib-pmpi/libmpe.dylib
  ld: file not found: /usr/local/opt/gcc/lib/gcc/9/libgfortran.5.dylib for architecture x86_64
  clang: error: linker command failed with exit code 1 (use -v to see invocation)
  warning: build_clib: command '/usr/local/Cellar/mpich/3.3.2/bin/mpicc' failed with exit status 1

  warning: build_clib: building optional library "mpe" failed

  checking for library 'vt-mpi' ...
  /usr/local/Cellar/mpich/3.3.2/bin/mpicc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/marius/miniconda3/envs/test_cr_dev/include -arch x86_64 -I/Users/marius/miniconda3/envs/test_cr_dev/include -arch x86_64 -c _configtest.c -o _configtest.o
  /usr/local/Cellar/mpich/3.3.2/bin/mpicc -flat_namespace -undefined suppress -arch x86_64 _configtest.o -lvt-mpi -o _configtest
  ld: library not found for -lvt-mpi
  clang: error: linker command failed with exit code 1 (use -v to see invocation)
  failure.
  removing: _configtest.c _configtest.o
  checking for library 'vt.mpi' ...
  /usr/local/Cellar/mpich/3.3.2/bin/mpicc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/marius/miniconda3/envs/test_cr_dev/include -arch x86_64 -I/Users/marius/miniconda3/envs/test_cr_dev/include -arch x86_64 -c _configtest.c -o _configtest.o
  /usr/local/Cellar/mpich/3.3.2/bin/mpicc -flat_namespace -undefined suppress -arch x86_64 _configtest.o -lvt.mpi -o _configtest
  ld: library not found for -lvt.mpi
  clang: error: linker command failed with exit code 1 (use -v to see invocation)
  failure.
  removing: _configtest.c _configtest.o
  building 'vt' dylib library
  /usr/local/Cellar/mpich/3.3.2/bin/mpicc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/marius/miniconda3/envs/test_cr_dev/include -arch x86_64 -I/Users/marius/miniconda3/envs/test_cr_dev/include -arch x86_64 -c src/lib-pmpi/vt.c -o build/temp.macosx-10.9-x86_64-3.8/src/lib-pmpi/vt.o
  /usr/local/Cellar/mpich/3.3.2/bin/mpicc -shared -undefined dynamic_lookup -L/Users/marius/miniconda3/envs/test_cr_dev/lib -arch x86_64 -L/Users/marius/miniconda3/envs/test_cr_dev/lib -arch x86_64 -arch x86_64 -install_name libvt.dylib build/temp.macosx-10.9-x86_64-3.8/src/lib-pmpi/vt.o -o build/lib.macosx-10.9-x86_64-3.8/mpi4py/lib-pmpi/libvt.dylib
  ld: file not found: /usr/local/opt/gcc/lib/gcc/9/libgfortran.5.dylib for architecture x86_64
  clang: error: linker command failed with exit code 1 (use -v to see invocation)
  warning: build_clib: command '/usr/local/Cellar/mpich/3.3.2/bin/mpicc' failed with exit status 1

  warning: build_clib: building optional library "vt" failed

  checking for library 'vt-mpi' ...
  /usr/local/Cellar/mpich/3.3.2/bin/mpicc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/marius/miniconda3/envs/test_cr_dev/include -arch x86_64 -I/Users/marius/miniconda3/envs/test_cr_dev/include -arch x86_64 -c _configtest.c -o _configtest.o
  /usr/local/Cellar/mpich/3.3.2/bin/mpicc -flat_namespace -undefined suppress -arch x86_64 _configtest.o -lvt-mpi -o _configtest
  ld: library not found for -lvt-mpi
  clang: error: linker command failed with exit code 1 (use -v to see invocation)
  failure.
  removing: _configtest.c _configtest.o
  checking for library 'vt.mpi' ...
  /usr/local/Cellar/mpich/3.3.2/bin/mpicc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/marius/miniconda3/envs/test_cr_dev/include -arch x86_64 -I/Users/marius/miniconda3/envs/test_cr_dev/include -arch x86_64 -c _configtest.c -o _configtest.o
  /usr/local/Cellar/mpich/3.3.2/bin/mpicc -flat_namespace -undefined suppress -arch x86_64 _configtest.o -lvt.mpi -o _configtest
  ld: library not found for -lvt.mpi
  clang: error: linker command failed with exit code 1 (use -v to see invocation)
  failure.
  removing: _configtest.c _configtest.o
  building 'vt-mpi' dylib library
  /usr/local/Cellar/mpich/3.3.2/bin/mpicc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/marius/miniconda3/envs/test_cr_dev/include -arch x86_64 -I/Users/marius/miniconda3/envs/test_cr_dev/include -arch x86_64 -c src/lib-pmpi/vt-mpi.c -o build/temp.macosx-10.9-x86_64-3.8/src/lib-pmpi/vt-mpi.o
  /usr/local/Cellar/mpich/3.3.2/bin/mpicc -shared -undefined dynamic_lookup -L/Users/marius/miniconda3/envs/test_cr_dev/lib -arch x86_64 -L/Users/marius/miniconda3/envs/test_cr_dev/lib -arch x86_64 -arch x86_64 -install_name libvt-mpi.dylib build/temp.macosx-10.9-x86_64-3.8/src/lib-pmpi/vt-mpi.o -o build/lib.macosx-10.9-x86_64-3.8/mpi4py/lib-pmpi/libvt-mpi.dylib
  ld: file not found: /usr/local/opt/gcc/lib/gcc/9/libgfortran.5.dylib for architecture x86_64
  clang: error: linker command failed with exit code 1 (use -v to see invocation)
  warning: build_clib: command '/usr/local/Cellar/mpich/3.3.2/bin/mpicc' failed with exit status 1

  warning: build_clib: building optional library "vt-mpi" failed

  checking for library 'vt-hyb' ...
  /usr/local/Cellar/mpich/3.3.2/bin/mpicc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/marius/miniconda3/envs/test_cr_dev/include -arch x86_64 -I/Users/marius/miniconda3/envs/test_cr_dev/include -arch x86_64 -c _configtest.c -o _configtest.o
  /usr/local/Cellar/mpich/3.3.2/bin/mpicc -flat_namespace -undefined suppress -arch x86_64 _configtest.o -lvt-hyb -o _configtest
  ld: library not found for -lvt-hyb
  clang: error: linker command failed with exit code 1 (use -v to see invocation)
  failure.
  removing: _configtest.c _configtest.o
  checking for library 'vt.ompi' ...
  /usr/local/Cellar/mpich/3.3.2/bin/mpicc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/marius/miniconda3/envs/test_cr_dev/include -arch x86_64 -I/Users/marius/miniconda3/envs/test_cr_dev/include -arch x86_64 -c _configtest.c -o _configtest.o
  /usr/local/Cellar/mpich/3.3.2/bin/mpicc -flat_namespace -undefined suppress -arch x86_64 _configtest.o -lvt.ompi -o _configtest
  ld: library not found for -lvt.ompi
  clang: error: linker command failed with exit code 1 (use -v to see invocation)
  failure.
  removing: _configtest.c _configtest.o
  building 'vt-hyb' dylib library
  /usr/local/Cellar/mpich/3.3.2/bin/mpicc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/marius/miniconda3/envs/test_cr_dev/include -arch x86_64 -I/Users/marius/miniconda3/envs/test_cr_dev/include -arch x86_64 -c src/lib-pmpi/vt-hyb.c -o build/temp.macosx-10.9-x86_64-3.8/src/lib-pmpi/vt-hyb.o
  /usr/local/Cellar/mpich/3.3.2/bin/mpicc -shared -undefined dynamic_lookup -L/Users/marius/miniconda3/envs/test_cr_dev/lib -arch x86_64 -L/Users/marius/miniconda3/envs/test_cr_dev/lib -arch x86_64 -arch x86_64 -install_name libvt-hyb.dylib build/temp.macosx-10.9-x86_64-3.8/src/lib-pmpi/vt-hyb.o -o build/lib.macosx-10.9-x86_64-3.8/mpi4py/lib-pmpi/libvt-hyb.dylib
  ld: file not found: /usr/local/opt/gcc/lib/gcc/9/libgfortran.5.dylib for architecture x86_64
  clang: error: linker command failed with exit code 1 (use -v to see invocation)
  warning: build_clib: command '/usr/local/Cellar/mpich/3.3.2/bin/mpicc' failed with exit status 1

  warning: build_clib: building optional library "vt-hyb" failed

  running build_ext
  MPI configuration: [mpi] from 'mpi.cfg'
  MPI C compiler:    /usr/local/Cellar/mpich/3.3.2/bin/mpicc
  MPI C++ compiler:  /usr/local/Cellar/mpich/3.3.2/bin/mpicxx
  MPI F compiler:    /usr/local/Cellar/mpich/3.3.2/bin/mpifort
  MPI F90 compiler:  /usr/local/Cellar/mpich/3.3.2/bin/mpif90
  MPI F77 compiler:  /usr/local/Cellar/mpich/3.3.2/bin/mpif77
  checking for dlopen() availability ...
  checking for header 'dlfcn.h' ...
  gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/marius/miniconda3/envs/test_cr_dev/include -arch x86_64 -I/Users/marius/miniconda3/envs/test_cr_dev/include -arch x86_64 -I/Users/marius/Projects/cellrank/.tox/py38-macos/include -I/Users/marius/miniconda3/envs/test_cr_dev/include/python3.8 -c _configtest.c -o _configtest.o
  success!
  removing: _configtest.c _configtest.o
  success!
  checking for library 'dl' ...
  gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/marius/miniconda3/envs/test_cr_dev/include -arch x86_64 -I/Users/marius/miniconda3/envs/test_cr_dev/include -arch x86_64 -I/Users/marius/Projects/cellrank/.tox/py38-macos/include -I/Users/marius/miniconda3/envs/test_cr_dev/include/python3.8 -c _configtest.c -o _configtest.o
  gcc -flat_namespace -undefined suppress -arch x86_64 _configtest.o -Lbuild/temp.macosx-10.9-x86_64-3.8 -ldl -o _configtest
  success!
  removing: _configtest.c _configtest.o _configtest
  checking for function 'dlopen' ...
  gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/marius/miniconda3/envs/test_cr_dev/include -arch x86_64 -I/Users/marius/miniconda3/envs/test_cr_dev/include -arch x86_64 -I/Users/marius/Projects/cellrank/.tox/py38-macos/include -I/Users/marius/miniconda3/envs/test_cr_dev/include/python3.8 -c _configtest.c -o _configtest.o
  gcc -arch x86_64 _configtest.o -Lbuild/temp.macosx-10.9-x86_64-3.8 -ldl -o _configtest
  success!
  removing: _configtest.c _configtest.o _configtest
  building 'mpi4py.dl' extension
  gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/marius/miniconda3/envs/test_cr_dev/include -arch x86_64 -I/Users/marius/miniconda3/envs/test_cr_dev/include -arch x86_64 -DHAVE_DLFCN_H=1 -DHAVE_DLOPEN=1 -I/Users/marius/Projects/cellrank/.tox/py38-macos/include -I/Users/marius/miniconda3/envs/test_cr_dev/include/python3.8 -c src/dynload.c -o build/temp.macosx-10.9-x86_64-3.8/src/dynload.o
  gcc -bundle -undefined dynamic_lookup -L/Users/marius/miniconda3/envs/test_cr_dev/lib -arch x86_64 -L/Users/marius/miniconda3/envs/test_cr_dev/lib -arch x86_64 -arch x86_64 build/temp.macosx-10.9-x86_64-3.8/src/dynload.o -Lbuild/temp.macosx-10.9-x86_64-3.8 -ldl -o build/lib.macosx-10.9-x86_64-3.8/mpi4py/dl.cpython-38-darwin.so
  checking for MPI compile and link ...
  /usr/local/Cellar/mpich/3.3.2/bin/mpicc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/marius/miniconda3/envs/test_cr_dev/include -arch x86_64 -I/Users/marius/miniconda3/envs/test_cr_dev/include -arch x86_64 -I/Users/marius/Projects/cellrank/.tox/py38-macos/include -I/Users/marius/miniconda3/envs/test_cr_dev/include/python3.8 -c _configtest.c -o _configtest.o
  success!
  removing: _configtest.c _configtest.o
  /usr/local/Cellar/mpich/3.3.2/bin/mpicc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/marius/miniconda3/envs/test_cr_dev/include -arch x86_64 -I/Users/marius/miniconda3/envs/test_cr_dev/include -arch x86_64 -I/Users/marius/Projects/cellrank/.tox/py38-macos/include -I/Users/marius/miniconda3/envs/test_cr_dev/include/python3.8 -c _configtest.c -o _configtest.o
  /usr/local/Cellar/mpich/3.3.2/bin/mpicc -arch x86_64 _configtest.o -Lbuild/temp.macosx-10.9-x86_64-3.8 -o _configtest
  ld: file not found: /usr/local/opt/gcc/lib/gcc/9/libgfortran.5.dylib for architecture x86_64
  clang: error: linker command failed with exit code 1 (use -v to see invocation)
  failure.
  removing: _configtest.c _configtest.o
  error: Cannot link MPI programs. Check your configuration!!!
  ----------------------------------------
  ERROR: Failed building wheel for mpi4py
  Running setup.py clean for mpi4py
  Building wheel for petsc (setup.py): started
  Building wheel for petsc (setup.py): finished with status 'error'
  ERROR: Command errored out with exit status 1:
   command: /Users/marius/Projects/cellrank/.tox/py38-macos/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/mx/0hyv8t2s26jdj79f55kvc_b80000gn/T/pip-install-0c7ialkz/petsc_e84ec31d200d465281c352ed1b3e9719/setup.py'"'"'; __file__='"'"'/private/var/folders/mx/0hyv8t2s26jdj79f55kvc_b80000gn/T/pip-install-0c7ialkz/petsc_e84ec31d200d465281c352ed1b3e9719/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /private/var/folders/mx/0hyv8t2s26jdj79f55kvc_b80000gn/T/pip-wheel-imbvjykx
       cwd: /private/var/folders/mx/0hyv8t2s26jdj79f55kvc_b80000gn/T/pip-install-0c7ialkz/petsc_e84ec31d200d465281c352ed1b3e9719/
  Complete output (1 lines):
  petsc: this package cannot be built as a wheel
  ----------------------------------------
  ERROR: Failed building wheel for petsc
  Running setup.py clean for petsc
  Building wheel for petsc4py (setup.py): started
  Building wheel for petsc4py (setup.py): finished with status 'error'
  ERROR: Command errored out with exit status 1:
   command: /Users/marius/Projects/cellrank/.tox/py38-macos/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/mx/0hyv8t2s26jdj79f55kvc_b80000gn/T/pip-install-0c7ialkz/petsc4py_021ad2ca40d54fcfa2cc85152483e4a2/setup.py'"'"'; __file__='"'"'/private/var/folders/mx/0hyv8t2s26jdj79f55kvc_b80000gn/T/pip-install-0c7ialkz/petsc4py_021ad2ca40d54fcfa2cc85152483e4a2/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /private/var/folders/mx/0hyv8t2s26jdj79f55kvc_b80000gn/T/pip-wheel-2yircs6m
       cwd: /private/var/folders/mx/0hyv8t2s26jdj79f55kvc_b80000gn/T/pip-install-0c7ialkz/petsc4py_021ad2ca40d54fcfa2cc85152483e4a2/
  Complete output (587 lines):
  running bdist_wheel
  running build
  running build_src
  running build_py
  creating build
  creating build/lib.macosx-10.9-x86_64-3.8
  creating build/lib.macosx-10.9-x86_64-3.8/petsc4py
  copying src/PETSc.py -> build/lib.macosx-10.9-x86_64-3.8/petsc4py
  copying src/__init__.py -> build/lib.macosx-10.9-x86_64-3.8/petsc4py
  copying src/__main__.py -> build/lib.macosx-10.9-x86_64-3.8/petsc4py
  creating build/lib.macosx-10.9-x86_64-3.8/petsc4py/lib
  copying src/lib/__init__.py -> build/lib.macosx-10.9-x86_64-3.8/petsc4py/lib
  creating build/lib.macosx-10.9-x86_64-3.8/petsc4py/include
  creating build/lib.macosx-10.9-x86_64-3.8/petsc4py/include/petsc4py
  copying src/include/petsc4py/numpy.h -> build/lib.macosx-10.9-x86_64-3.8/petsc4py/include/petsc4py
  copying src/include/petsc4py/petsc4py.h -> build/lib.macosx-10.9-x86_64-3.8/petsc4py/include/petsc4py
  copying src/include/petsc4py/petsc4py.PETSc.h -> build/lib.macosx-10.9-x86_64-3.8/petsc4py/include/petsc4py
  copying src/include/petsc4py/petsc4py.PETSc_api.h -> build/lib.macosx-10.9-x86_64-3.8/petsc4py/include/petsc4py
  copying src/include/petsc4py/petsc4py.i -> build/lib.macosx-10.9-x86_64-3.8/petsc4py/include/petsc4py
  copying src/include/petsc4py/PETSc.pxd -> build/lib.macosx-10.9-x86_64-3.8/petsc4py/include/petsc4py
  copying src/include/petsc4py/__init__.pxd -> build/lib.macosx-10.9-x86_64-3.8/petsc4py/include/petsc4py
  copying src/include/petsc4py/__init__.pyx -> build/lib.macosx-10.9-x86_64-3.8/petsc4py/include/petsc4py
  copying src/PETSc.pxd -> build/lib.macosx-10.9-x86_64-3.8/petsc4py
  copying src/lib/petsc.cfg -> build/lib.macosx-10.9-x86_64-3.8/petsc4py/lib
  running build_ext
  PETSC_DIR:    /Users/marius/petsc-3.13.0
  PETSC_ARCH:   macx
  version:      3.13.0 release
  integer-size: 32-bit
  scalar-type:  real
  precision:    double
  language:     CONLY
  compiler:     /Users/marius/petsc-3.13.0/macx/bin/mpicc
  linker:       /Users/marius/petsc-3.13.0/macx/bin/mpicc
  building 'PETSc' extension
  creating build/temp.macosx-10.9-x86_64-3.8
  creating build/temp.macosx-10.9-x86_64-3.8/macx
  creating build/temp.macosx-10.9-x86_64-3.8/macx/src
  /Users/marius/petsc-3.13.0/macx/bin/mpicc -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -g3 -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -I/Users/marius/miniconda3/envs/test_cr_dev/include -arch x86_64 -I/Users/marius/miniconda3/envs/test_cr_dev/include -arch x86_64 -I/Users/marius/petsc-3.13.0/macx/include -I/Users/marius/petsc-3.13.0/include -Isrc/include -I/Users/marius/Projects/cellrank/.tox/py38-macos/lib/python3.8/site-packages/numpy/core/include -I/Users/marius/Projects/cellrank/.tox/py38-macos/include -I/Users/marius/miniconda3/envs/test_cr_dev/include/python3.8 -c src/PETSc.c -o build/temp.macosx-10.9-x86_64-3.8/macx/src/PETSc.o
  In file included from src/PETSc.c:4:
  src/petsc4py.PETSc.c:302985:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
    0, /*tp_print*/
    ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
      Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  In file included from src/PETSc.c:4:
  src/petsc4py.PETSc.c:303284:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
    0, /*tp_print*/
    ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
      Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  In file included from src/PETSc.c:4:
  src/petsc4py.PETSc.c:303408:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
    0, /*tp_print*/
    ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
      Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  In file included from src/PETSc.c:4:
  src/petsc4py.PETSc.c:303541:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
    0, /*tp_print*/
    ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
      Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  In file included from src/PETSc.c:4:
  src/petsc4py.PETSc.c:303741:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
    0, /*tp_print*/
    ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
      Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  In file included from src/PETSc.c:4:
  src/petsc4py.PETSc.c:303880:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
    0, /*tp_print*/
    ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
      Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  In file included from src/PETSc.c:4:
  src/petsc4py.PETSc.c:304012:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
    0, /*tp_print*/
    ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
      Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  In file included from src/PETSc.c:4:
  src/petsc4py.PETSc.c:304436:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
    0, /*tp_print*/
    ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
      Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  In file included from src/PETSc.c:4:
  src/petsc4py.PETSc.c:304531:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
    0, /*tp_print*/
    ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
      Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  In file included from src/PETSc.c:4:
  src/petsc4py.PETSc.c:304620:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
    0, /*tp_print*/
    ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
      Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  In file included from src/PETSc.c:4:
  src/petsc4py.PETSc.c:304722:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
    0, /*tp_print*/
    ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
      Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  In file included from src/PETSc.c:4:
  src/petsc4py.PETSc.c:304867:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
    0, /*tp_print*/
    ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
      Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  In file included from src/PETSc.c:4:
  src/petsc4py.PETSc.c:305310:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
    0, /*tp_print*/
    ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
      Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  In file included from src/PETSc.c:4:
  src/petsc4py.PETSc.c:305407:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
    0, /*tp_print*/
    ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
      Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  In file included from src/PETSc.c:4:
  src/petsc4py.PETSc.c:305595:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
    0, /*tp_print*/
    ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
      Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  In file included from src/PETSc.c:4:
  src/petsc4py.PETSc.c:305993:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
    0, /*tp_print*/
    ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
      Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  In file included from src/PETSc.c:4:
  src/petsc4py.PETSc.c:306453:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
    0, /*tp_print*/
    ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
      Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  In file included from src/PETSc.c:4:
  src/petsc4py.PETSc.c:306865:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
    0, /*tp_print*/
    ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
      Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  In file included from src/PETSc.c:4:
  src/petsc4py.PETSc.c:307135:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
    0, /*tp_print*/
    ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
      Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  In file included from src/PETSc.c:4:
  src/petsc4py.PETSc.c:307230:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
    0, /*tp_print*/
    ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
      Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  In file included from src/PETSc.c:4:
  src/petsc4py.PETSc.c:307447:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
    0, /*tp_print*/
    ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
      Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  In file included from src/PETSc.c:4:
  src/petsc4py.PETSc.c:307550:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
    0, /*tp_print*/
    ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
      Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  In file included from src/PETSc.c:4:
  src/petsc4py.PETSc.c:307645:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
    0, /*tp_print*/
    ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
      Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  In file included from src/PETSc.c:4:
  src/petsc4py.PETSc.c:307735:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
    0, /*tp_print*/
    ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
      Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  In file included from src/PETSc.c:4:
  src/petsc4py.PETSc.c:307872:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
    0, /*tp_print*/
    ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
      Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  In file included from src/PETSc.c:4:
  src/petsc4py.PETSc.c:308009:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
    0, /*tp_print*/
    ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
      Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  In file included from src/PETSc.c:4:
  src/petsc4py.PETSc.c:308136:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
    0, /*tp_print*/
    ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
      Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  In file included from src/PETSc.c:4:
  src/petsc4py.PETSc.c:308295:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
    0, /*tp_print*/
    ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
      Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  In file included from src/PETSc.c:4:
  src/petsc4py.PETSc.c:308526:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
    0, /*tp_print*/
    ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
      Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  In file included from src/PETSc.c:4:
  src/petsc4py.PETSc.c:308673:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
    0, /*tp_print*/
    ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
      Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  In file included from src/PETSc.c:4:
  src/petsc4py.PETSc.c:308868:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
    0, /*tp_print*/
    ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
      Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  In file included from src/PETSc.c:4:
  src/petsc4py.PETSc.c:308977:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
    0, /*tp_print*/
    ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
      Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  In file included from src/PETSc.c:4:
  src/petsc4py.PETSc.c:309080:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
    0, /*tp_print*/
    ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
      Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  In file included from src/PETSc.c:4:
  src/petsc4py.PETSc.c:309304:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
    0, /*tp_print*/
    ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
      Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  In file included from src/PETSc.c:4:
  src/petsc4py.PETSc.c:309507:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
    0, /*tp_print*/
    ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
      Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  In file included from src/PETSc.c:4:
  src/petsc4py.PETSc.c:309732:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
    0, /*tp_print*/
    ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
      Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  In file included from src/PETSc.c:4:
  src/petsc4py.PETSc.c:309826:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
    0, /*tp_print*/
    ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
      Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  In file included from src/PETSc.c:4:
  src/petsc4py.PETSc.c:310014:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
    0, /*tp_print*/
    ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
      Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  In file included from src/PETSc.c:4:
  src/petsc4py.PETSc.c:310170:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
    0, /*tp_print*/
    ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
      Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  In file included from src/PETSc.c:4:
  src/petsc4py.PETSc.c:310346:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
    0, /*tp_print*/
    ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
      Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  In file included from src/PETSc.c:4:
  src/petsc4py.PETSc.c:310439:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
    0, /*tp_print*/
    ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
      Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  In file included from src/PETSc.c:4:
  src/petsc4py.PETSc.c:310544:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
    0, /*tp_print*/
    ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
      Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  In file included from src/PETSc.c:4:
  src/petsc4py.PETSc.c:310665:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
    0, /*tp_print*/
    ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
      Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  In file included from src/PETSc.c:4:
  src/petsc4py.PETSc.c:310854:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
    0, /*tp_print*/
    ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
      Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  In file included from src/PETSc.c:4:
  src/petsc4py.PETSc.c:310973:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
    0, /*tp_print*/
    ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
      Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  In file included from src/PETSc.c:4:
  src/petsc4py.PETSc.c:311234:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
    0, /*tp_print*/
    ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
      Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  In file included from src/PETSc.c:4:
  src/petsc4py.PETSc.c:311380:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
    0, /*tp_print*/
    ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
      Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  In file included from src/PETSc.c:4:
  src/petsc4py.PETSc.c:333201:5: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
      0,
      ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
      Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  48 warnings generated.
  /Users/marius/petsc-3.13.0/macx/bin/mpicc -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -g3 -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -I/Users/marius/miniconda3/envs/test_cr_dev/include -arch x86_64 -I/Users/marius/miniconda3/envs/test_cr_dev/include -arch x86_64 -I/Users/marius/petsc-3.13.0/macx/include -I/Users/marius/petsc-3.13.0/include -Isrc/include -I/Users/marius/Projects/cellrank/.tox/py38-macos/lib/python3.8/site-packages/numpy/core/include -I/Users/marius/Projects/cellrank/.tox/py38-macos/include -I/Users/marius/miniconda3/envs/test_cr_dev/include/python3.8 -c src/libpetsc4py.c -o build/temp.macosx-10.9-x86_64-3.8/macx/src/libpetsc4py.o
  In file included from src/libpetsc4py.c:6:
  src/libpetsc4py/libpetsc4py.c:29354:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
    0, /*tp_print*/
    ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
      Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  In file included from src/libpetsc4py.c:6:
  src/libpetsc4py/libpetsc4py.c:29433:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
    0, /*tp_print*/
    ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
      Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  In file included from src/libpetsc4py.c:6:
  src/libpetsc4py/libpetsc4py.c:29512:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
    0, /*tp_print*/
    ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
      Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  In file included from src/libpetsc4py.c:6:
  src/libpetsc4py/libpetsc4py.c:29591:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
    0, /*tp_print*/
    ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
      Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  In file included from src/libpetsc4py.c:6:
  src/libpetsc4py/libpetsc4py.c:29670:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
    0, /*tp_print*/
    ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
      Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  In file included from src/libpetsc4py.c:6:
  src/libpetsc4py/libpetsc4py.c:29749:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
    0, /*tp_print*/
    ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
      Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  6 warnings generated.
  creating build/lib.macosx-10.9-x86_64-3.8/petsc4py/lib/macx
  /Users/marius/petsc-3.13.0/macx/bin/mpicc -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -g3 -bundle -undefined dynamic_lookup -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -I/Users/marius/miniconda3/envs/test_cr_dev/include -arch x86_64 -I/Users/marius/miniconda3/envs/test_cr_dev/include -arch x86_64 -L/Users/marius/miniconda3/envs/test_cr_dev/lib -arch x86_64 -L/Users/marius/miniconda3/envs/test_cr_dev/lib -arch x86_64 -arch x86_64 build/temp.macosx-10.9-x86_64-3.8/macx/src/PETSc.o build/temp.macosx-10.9-x86_64-3.8/macx/src/libpetsc4py.o -L/Users/marius/petsc-3.13.0/macx/lib -L/Users/marius/petsc-3.13.0/macx/lib -lpetsc -o build/lib.macosx-10.9-x86_64-3.8/petsc4py/lib/macx/PETSc.cpython-38-darwin.so
  ld: file not found: /usr/local/opt/gcc/lib/gcc/9/libgfortran.5.dylib for architecture x86_64
  clang: error: linker command failed with exit code 1 (use -v to see invocation)
  error: command '/Users/marius/petsc-3.13.0/macx/bin/mpicc' failed with exit status 1
  ----------------------------------------
  ERROR: Failed building wheel for petsc4py
  Running setup.py clean for petsc4py
  Building wheel for slepc (setup.py): started
  Building wheel for slepc (setup.py): finished with status 'error'
  ERROR: Command errored out with exit status 1:
   command: /Users/marius/Projects/cellrank/.tox/py38-macos/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/mx/0hyv8t2s26jdj79f55kvc_b80000gn/T/pip-install-0c7ialkz/slepc_7369694c127545d298d73e5cbee629cc/setup.py'"'"'; __file__='"'"'/private/var/folders/mx/0hyv8t2s26jdj79f55kvc_b80000gn/T/pip-install-0c7ialkz/slepc_7369694c127545d298d73e5cbee629cc/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /private/var/folders/mx/0hyv8t2s26jdj79f55kvc_b80000gn/T/pip-wheel-l91o2ll8
       cwd: /private/var/folders/mx/0hyv8t2s26jdj79f55kvc_b80000gn/T/pip-install-0c7ialkz/slepc_7369694c127545d298d73e5cbee629cc/
  Complete output (1 lines):
  slepc: this package cannot be built as a wheel
  ----------------------------------------
  ERROR: Failed building wheel for slepc
  Running setup.py clean for slepc
  Building wheel for slepc4py (setup.py): started
  Building wheel for slepc4py (setup.py): finished with status 'error'
  ERROR: Command errored out with exit status 1:
   command: /Users/marius/Projects/cellrank/.tox/py38-macos/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/mx/0hyv8t2s26jdj79f55kvc_b80000gn/T/pip-install-0c7ialkz/slepc4py_dfeec3854c6d4a0dbdb6700555f4acf3/setup.py'"'"'; __file__='"'"'/private/var/folders/mx/0hyv8t2s26jdj79f55kvc_b80000gn/T/pip-install-0c7ialkz/slepc4py_dfeec3854c6d4a0dbdb6700555f4acf3/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /private/var/folders/mx/0hyv8t2s26jdj79f55kvc_b80000gn/T/pip-wheel-3z12de0x
       cwd: /private/var/folders/mx/0hyv8t2s26jdj79f55kvc_b80000gn/T/pip-install-0c7ialkz/slepc4py_dfeec3854c6d4a0dbdb6700555f4acf3/
  Complete output (165 lines):
  running bdist_wheel
  running build
  running build_src
  running build_py
  creating build
  creating build/lib.macosx-10.9-x86_64-3.8
  creating build/lib.macosx-10.9-x86_64-3.8/slepc4py
  copying src/__init__.py -> build/lib.macosx-10.9-x86_64-3.8/slepc4py
  copying src/SLEPc.py -> build/lib.macosx-10.9-x86_64-3.8/slepc4py
  copying src/__main__.py -> build/lib.macosx-10.9-x86_64-3.8/slepc4py
  creating build/lib.macosx-10.9-x86_64-3.8/slepc4py/lib
  copying src/lib/__init__.py -> build/lib.macosx-10.9-x86_64-3.8/slepc4py/lib
  creating build/lib.macosx-10.9-x86_64-3.8/slepc4py/include
  creating build/lib.macosx-10.9-x86_64-3.8/slepc4py/include/slepc4py
  copying src/include/slepc4py/slepc4py.h -> build/lib.macosx-10.9-x86_64-3.8/slepc4py/include/slepc4py
  copying src/include/slepc4py/slepc4py.SLEPc.h -> build/lib.macosx-10.9-x86_64-3.8/slepc4py/include/slepc4py
  copying src/include/slepc4py/slepc4py.SLEPc_api.h -> build/lib.macosx-10.9-x86_64-3.8/slepc4py/include/slepc4py
  copying src/include/slepc4py/slepc4py.i -> build/lib.macosx-10.9-x86_64-3.8/slepc4py/include/slepc4py
  copying src/include/slepc4py/__init__.pxd -> build/lib.macosx-10.9-x86_64-3.8/slepc4py/include/slepc4py
  copying src/include/slepc4py/SLEPc.pxd -> build/lib.macosx-10.9-x86_64-3.8/slepc4py/include/slepc4py
  copying src/include/slepc4py/__init__.pyx -> build/lib.macosx-10.9-x86_64-3.8/slepc4py/include/slepc4py
  copying src/SLEPc.pxd -> build/lib.macosx-10.9-x86_64-3.8/slepc4py
  copying src/lib/slepc.cfg -> build/lib.macosx-10.9-x86_64-3.8/slepc4py/lib
  running build_ext
  SLEPC_DIR:   /Users/marius/slepc-3.13.1
  PETSC_DIR:    /Users/marius/petsc-3.13.0
  PETSC_ARCH:   macx
  version:      3.13.0 release
  integer-size: 32-bit
  scalar-type:  real
  precision:    double
  language:     CONLY
  compiler:     /Users/marius/petsc-3.13.0/macx/bin/mpicc
  linker:       /Users/marius/petsc-3.13.0/macx/bin/mpicc
  building 'SLEPc' extension
  creating build/temp.macosx-10.9-x86_64-3.8
  creating build/temp.macosx-10.9-x86_64-3.8/macx
  creating build/temp.macosx-10.9-x86_64-3.8/macx/src
  /Users/marius/petsc-3.13.0/macx/bin/mpicc -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -g3 -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -I/Users/marius/miniconda3/envs/test_cr_dev/include -arch x86_64 -I/Users/marius/miniconda3/envs/test_cr_dev/include -arch x86_64 -I/Users/marius/slepc-3.13.1/include -I/Users/marius/slepc-3.13.1/macx/include -I/Users/marius/petsc-3.13.0/macx/include -I/Users/marius/petsc-3.13.0/include -Isrc/include -I/Users/marius/Projects/cellrank/.tox/py38-macos/include -I/Users/marius/miniconda3/envs/test_cr_dev/include/python3.8 -c src/SLEPc.c -o build/temp.macosx-10.9-x86_64-3.8/macx/src/SLEPc.o
  In file included from src/SLEPc.c:3:
  src/slepc4py.SLEPc.c:58818:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
    0, /*tp_print*/
    ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
      Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  In file included from src/SLEPc.c:3:
  src/slepc4py.SLEPc.c:58966:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
    0, /*tp_print*/
    ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
      Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  In file included from src/SLEPc.c:3:
  src/slepc4py.SLEPc.c:59101:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
    0, /*tp_print*/
    ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
      Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  In file included from src/SLEPc.c:3:
  src/slepc4py.SLEPc.c:59225:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
    0, /*tp_print*/
    ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
      Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  In file included from src/SLEPc.c:3:
  src/slepc4py.SLEPc.c:59349:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
    0, /*tp_print*/
    ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
      Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  In file included from src/SLEPc.c:3:
  src/slepc4py.SLEPc.c:59671:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
    0, /*tp_print*/
    ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
      Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  In file included from src/SLEPc.c:3:
  src/slepc4py.SLEPc.c:59901:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
    0, /*tp_print*/
    ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
      Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  In file included from src/SLEPc.c:3:
  src/slepc4py.SLEPc.c:60081:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
    0, /*tp_print*/
    ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
      Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  In file included from src/SLEPc.c:3:
  src/slepc4py.SLEPc.c:60231:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
    0, /*tp_print*/
    ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
      Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  In file included from src/SLEPc.c:3:
  src/slepc4py.SLEPc.c:60365:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
    0, /*tp_print*/
    ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
      Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  In file included from src/SLEPc.c:3:
  src/slepc4py.SLEPc.c:60470:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
    0, /*tp_print*/
    ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
      Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  In file included from src/SLEPc.c:3:
  src/slepc4py.SLEPc.c:60565:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
    0, /*tp_print*/
    ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
      Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      ^
  /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  12 warnings generated.
  creating build/lib.macosx-10.9-x86_64-3.8/slepc4py/lib/macx
  /Users/marius/petsc-3.13.0/macx/bin/mpicc -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -g3 -bundle -undefined dynamic_lookup -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -I/Users/marius/miniconda3/envs/test_cr_dev/include -arch x86_64 -I/Users/marius/miniconda3/envs/test_cr_dev/include -arch x86_64 -L/Users/marius/miniconda3/envs/test_cr_dev/lib -arch x86_64 -L/Users/marius/miniconda3/envs/test_cr_dev/lib -arch x86_64 -arch x86_64 build/temp.macosx-10.9-x86_64-3.8/macx/src/SLEPc.o -L/Users/marius/slepc-3.13.1/lib -L/Users/marius/slepc-3.13.1/macx/lib -L/Users/marius/petsc-3.13.0/macx/lib -L/Users/marius/slepc-3.13.1/lib -L/Users/marius/slepc-3.13.1/macx/lib -L/Users/marius/petsc-3.13.0/macx/lib -lslepc -lpetsc -o build/lib.macosx-10.9-x86_64-3.8/slepc4py/lib/macx/SLEPc.cpython-38-darwin.so
  ld: file not found: /usr/local/opt/gcc/lib/gcc/9/libgfortran.5.dylib for architecture x86_64
  clang: error: linker command failed with exit code 1 (use -v to see invocation)
  error: command '/Users/marius/petsc-3.13.0/macx/bin/mpicc' failed with exit status 1
  ----------------------------------------
  ERROR: Failed building wheel for slepc4py
  Running setup.py clean for slepc4py
Successfully built jax
Failed to build mpi4py petsc petsc4py slepc slepc4py
Installing collected packages: threadpoolctl, scipy, pytz, llvmlite, joblib, dunamai, xlrd, stdlib-list, scikit-learn, patsy, pandas, packaging, numexpr, numba, natsort, h5py, get-version, decorator, umap-learn, tqdm, toml, tables, statsmodels, sinfo, seaborn, python-utils, py, pluggy, numpy-groupies, networkx, legacy-api-wrap, iniconfig, click, attrs, anndata, texttable, scanpy, pytest, progressbar2, petsc4py, mpi4py, loompy, future, docrep, cython, wrapt, typing-extensions, slepc4py, slepc, scvelo, python-igraph, pytest-forked, pygpcca, pygam, POT, petsc, opt-einsum, flatbuffers, execnet, coverage, absl-py, wot, statot, pytest-xdist, pytest-mock, pytest-cov, louvain, leidenalg, jaxlib, jax, filelock, cellrank, bezier
    Running setup.py install for petsc4py: started
    Running setup.py install for petsc4py: finished with status 'error'
    ERROR: Command errored out with exit status 1:
     command: /Users/marius/Projects/cellrank/.tox/py38-macos/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/mx/0hyv8t2s26jdj79f55kvc_b80000gn/T/pip-install-0c7ialkz/petsc4py_021ad2ca40d54fcfa2cc85152483e4a2/setup.py'"'"'; __file__='"'"'/private/var/folders/mx/0hyv8t2s26jdj79f55kvc_b80000gn/T/pip-install-0c7ialkz/petsc4py_021ad2ca40d54fcfa2cc85152483e4a2/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /private/var/folders/mx/0hyv8t2s26jdj79f55kvc_b80000gn/T/pip-record-b0ixmx7y/install-record.txt --single-version-externally-managed --compile --install-headers /Users/marius/Projects/cellrank/.tox/py38-macos/include/site/python3.8/petsc4py
         cwd: /private/var/folders/mx/0hyv8t2s26jdj79f55kvc_b80000gn/T/pip-install-0c7ialkz/petsc4py_021ad2ca40d54fcfa2cc85152483e4a2/
    Complete output (587 lines):
    running install
    running build
    running build_src
    running build_py
    creating build
    creating build/lib.macosx-10.9-x86_64-3.8
    creating build/lib.macosx-10.9-x86_64-3.8/petsc4py
    copying src/PETSc.py -> build/lib.macosx-10.9-x86_64-3.8/petsc4py
    copying src/__init__.py -> build/lib.macosx-10.9-x86_64-3.8/petsc4py
    copying src/__main__.py -> build/lib.macosx-10.9-x86_64-3.8/petsc4py
    creating build/lib.macosx-10.9-x86_64-3.8/petsc4py/lib
    copying src/lib/__init__.py -> build/lib.macosx-10.9-x86_64-3.8/petsc4py/lib
    creating build/lib.macosx-10.9-x86_64-3.8/petsc4py/include
    creating build/lib.macosx-10.9-x86_64-3.8/petsc4py/include/petsc4py
    copying src/include/petsc4py/numpy.h -> build/lib.macosx-10.9-x86_64-3.8/petsc4py/include/petsc4py
    copying src/include/petsc4py/petsc4py.h -> build/lib.macosx-10.9-x86_64-3.8/petsc4py/include/petsc4py
    copying src/include/petsc4py/petsc4py.PETSc.h -> build/lib.macosx-10.9-x86_64-3.8/petsc4py/include/petsc4py
    copying src/include/petsc4py/petsc4py.PETSc_api.h -> build/lib.macosx-10.9-x86_64-3.8/petsc4py/include/petsc4py
    copying src/include/petsc4py/petsc4py.i -> build/lib.macosx-10.9-x86_64-3.8/petsc4py/include/petsc4py
    copying src/include/petsc4py/PETSc.pxd -> build/lib.macosx-10.9-x86_64-3.8/petsc4py/include/petsc4py
    copying src/include/petsc4py/__init__.pxd -> build/lib.macosx-10.9-x86_64-3.8/petsc4py/include/petsc4py
    copying src/include/petsc4py/__init__.pyx -> build/lib.macosx-10.9-x86_64-3.8/petsc4py/include/petsc4py
    copying src/PETSc.pxd -> build/lib.macosx-10.9-x86_64-3.8/petsc4py
    copying src/lib/petsc.cfg -> build/lib.macosx-10.9-x86_64-3.8/petsc4py/lib
    running build_ext
    PETSC_DIR:    /Users/marius/petsc-3.13.0
    PETSC_ARCH:   macx
    version:      3.13.0 release
    integer-size: 32-bit
    scalar-type:  real
    precision:    double
    language:     CONLY
    compiler:     /Users/marius/petsc-3.13.0/macx/bin/mpicc
    linker:       /Users/marius/petsc-3.13.0/macx/bin/mpicc
    building 'PETSc' extension
    creating build/temp.macosx-10.9-x86_64-3.8
    creating build/temp.macosx-10.9-x86_64-3.8/macx
    creating build/temp.macosx-10.9-x86_64-3.8/macx/src
    /Users/marius/petsc-3.13.0/macx/bin/mpicc -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -g3 -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -I/Users/marius/miniconda3/envs/test_cr_dev/include -arch x86_64 -I/Users/marius/miniconda3/envs/test_cr_dev/include -arch x86_64 -I/Users/marius/petsc-3.13.0/macx/include -I/Users/marius/petsc-3.13.0/include -Isrc/include -I/Users/marius/Projects/cellrank/.tox/py38-macos/lib/python3.8/site-packages/numpy/core/include -I/Users/marius/Projects/cellrank/.tox/py38-macos/include -I/Users/marius/miniconda3/envs/test_cr_dev/include/python3.8 -c src/PETSc.c -o build/temp.macosx-10.9-x86_64-3.8/macx/src/PETSc.o
    In file included from src/PETSc.c:4:
    src/petsc4py.PETSc.c:302985:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
      0, /*tp_print*/
      ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
        Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
        ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
    #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                         ^
    In file included from src/PETSc.c:4:
    src/petsc4py.PETSc.c:303284:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
      0, /*tp_print*/
      ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
        Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
        ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
    #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                         ^
    In file included from src/PETSc.c:4:
    src/petsc4py.PETSc.c:303408:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
      0, /*tp_print*/
      ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
        Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
        ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
    #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                         ^
    In file included from src/PETSc.c:4:
    src/petsc4py.PETSc.c:303541:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
      0, /*tp_print*/
      ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
        Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
        ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
    #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                         ^
    In file included from src/PETSc.c:4:
    src/petsc4py.PETSc.c:303741:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
      0, /*tp_print*/
      ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
        Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
        ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
    #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                         ^
    In file included from src/PETSc.c:4:
    src/petsc4py.PETSc.c:303880:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
      0, /*tp_print*/
      ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
        Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
        ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
    #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                         ^
    In file included from src/PETSc.c:4:
    src/petsc4py.PETSc.c:304012:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
      0, /*tp_print*/
      ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
        Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
        ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
    #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                         ^
    In file included from src/PETSc.c:4:
    src/petsc4py.PETSc.c:304436:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
      0, /*tp_print*/
      ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
        Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
        ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
    #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                         ^
    In file included from src/PETSc.c:4:
    src/petsc4py.PETSc.c:304531:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
      0, /*tp_print*/
      ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
        Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
        ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
    #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                         ^
    In file included from src/PETSc.c:4:
    src/petsc4py.PETSc.c:304620:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
      0, /*tp_print*/
      ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
        Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
        ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
    #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                         ^
    In file included from src/PETSc.c:4:
    src/petsc4py.PETSc.c:304722:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
      0, /*tp_print*/
      ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
        Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
        ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
    #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                         ^
    In file included from src/PETSc.c:4:
    src/petsc4py.PETSc.c:304867:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
      0, /*tp_print*/
      ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
        Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
        ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
    #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                         ^
    In file included from src/PETSc.c:4:
    src/petsc4py.PETSc.c:305310:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
      0, /*tp_print*/
      ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
        Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
        ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
    #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                         ^
    In file included from src/PETSc.c:4:
    src/petsc4py.PETSc.c:305407:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
      0, /*tp_print*/
      ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
        Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
        ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
    #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                         ^
    In file included from src/PETSc.c:4:
    src/petsc4py.PETSc.c:305595:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
      0, /*tp_print*/
      ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
        Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
        ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
    #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                         ^
    In file included from src/PETSc.c:4:
    src/petsc4py.PETSc.c:305993:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
      0, /*tp_print*/
      ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
        Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
        ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
    #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                         ^
    In file included from src/PETSc.c:4:
    src/petsc4py.PETSc.c:306453:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
      0, /*tp_print*/
      ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
        Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
        ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
    #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                         ^
    In file included from src/PETSc.c:4:
    src/petsc4py.PETSc.c:306865:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
      0, /*tp_print*/
      ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
        Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
        ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
    #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                         ^
    In file included from src/PETSc.c:4:
    src/petsc4py.PETSc.c:307135:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
      0, /*tp_print*/
      ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
        Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
        ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
    #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                         ^
    In file included from src/PETSc.c:4:
    src/petsc4py.PETSc.c:307230:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
      0, /*tp_print*/
      ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
        Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
        ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
    #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                         ^
    In file included from src/PETSc.c:4:
    src/petsc4py.PETSc.c:307447:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
      0, /*tp_print*/
      ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
        Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
        ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
    #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                         ^
    In file included from src/PETSc.c:4:
    src/petsc4py.PETSc.c:307550:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
      0, /*tp_print*/
      ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
        Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
        ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
    #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                         ^
    In file included from src/PETSc.c:4:
    src/petsc4py.PETSc.c:307645:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
      0, /*tp_print*/
      ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
        Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
        ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
    #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                         ^
    In file included from src/PETSc.c:4:
    src/petsc4py.PETSc.c:307735:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
      0, /*tp_print*/
      ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
        Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
        ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
    #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                         ^
    In file included from src/PETSc.c:4:
    src/petsc4py.PETSc.c:307872:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
      0, /*tp_print*/
      ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
        Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
        ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
    #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                         ^
    In file included from src/PETSc.c:4:
    src/petsc4py.PETSc.c:308009:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
      0, /*tp_print*/
      ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
        Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
        ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
    #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                         ^
    In file included from src/PETSc.c:4:
    src/petsc4py.PETSc.c:308136:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
      0, /*tp_print*/
      ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
        Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
        ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
    #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                         ^
    In file included from src/PETSc.c:4:
    src/petsc4py.PETSc.c:308295:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
      0, /*tp_print*/
      ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
        Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
        ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
    #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                         ^
    In file included from src/PETSc.c:4:
    src/petsc4py.PETSc.c:308526:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
      0, /*tp_print*/
      ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
        Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
        ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
    #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                         ^
    In file included from src/PETSc.c:4:
    src/petsc4py.PETSc.c:308673:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
      0, /*tp_print*/
      ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
        Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
        ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
    #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                         ^
    In file included from src/PETSc.c:4:
    src/petsc4py.PETSc.c:308868:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
      0, /*tp_print*/
      ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
        Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
        ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
    #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                         ^
    In file included from src/PETSc.c:4:
    src/petsc4py.PETSc.c:308977:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
      0, /*tp_print*/
      ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
        Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
        ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
    #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                         ^
    In file included from src/PETSc.c:4:
    src/petsc4py.PETSc.c:309080:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
      0, /*tp_print*/
      ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
        Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
        ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
    #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                         ^
    In file included from src/PETSc.c:4:
    src/petsc4py.PETSc.c:309304:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
      0, /*tp_print*/
      ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
        Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
        ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
    #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                         ^
    In file included from src/PETSc.c:4:
    src/petsc4py.PETSc.c:309507:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
      0, /*tp_print*/
      ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
        Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
        ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
    #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                         ^
    In file included from src/PETSc.c:4:
    src/petsc4py.PETSc.c:309732:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
      0, /*tp_print*/
      ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
        Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
        ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
    #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                         ^
    In file included from src/PETSc.c:4:
    src/petsc4py.PETSc.c:309826:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
      0, /*tp_print*/
      ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
        Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
        ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
    #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                         ^
    In file included from src/PETSc.c:4:
    src/petsc4py.PETSc.c:310014:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
      0, /*tp_print*/
      ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
        Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
        ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
    #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                         ^
    In file included from src/PETSc.c:4:
    src/petsc4py.PETSc.c:310170:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
      0, /*tp_print*/
      ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
        Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
        ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
    #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                         ^
    In file included from src/PETSc.c:4:
    src/petsc4py.PETSc.c:310346:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
      0, /*tp_print*/
      ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
        Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
        ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
    #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                         ^
    In file included from src/PETSc.c:4:
    src/petsc4py.PETSc.c:310439:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
      0, /*tp_print*/
      ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
        Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
        ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
    #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                         ^
    In file included from src/PETSc.c:4:
    src/petsc4py.PETSc.c:310544:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
      0, /*tp_print*/
      ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
        Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
        ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
    #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                         ^
    In file included from src/PETSc.c:4:
    src/petsc4py.PETSc.c:310665:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
      0, /*tp_print*/
      ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
        Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
        ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
    #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                         ^
    In file included from src/PETSc.c:4:
    src/petsc4py.PETSc.c:310854:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
      0, /*tp_print*/
      ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
        Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
        ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
    #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                         ^
    In file included from src/PETSc.c:4:
    src/petsc4py.PETSc.c:310973:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
      0, /*tp_print*/
      ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
        Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
        ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
    #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                         ^
    In file included from src/PETSc.c:4:
    src/petsc4py.PETSc.c:311234:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
      0, /*tp_print*/
      ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
        Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
        ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
    #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                         ^
    In file included from src/PETSc.c:4:
    src/petsc4py.PETSc.c:311380:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
      0, /*tp_print*/
      ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
        Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
        ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
    #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                         ^
    In file included from src/PETSc.c:4:
    src/petsc4py.PETSc.c:333201:5: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
        0,
        ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
        Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
        ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
    #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                         ^
    48 warnings generated.
    /Users/marius/petsc-3.13.0/macx/bin/mpicc -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -g3 -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -I/Users/marius/miniconda3/envs/test_cr_dev/include -arch x86_64 -I/Users/marius/miniconda3/envs/test_cr_dev/include -arch x86_64 -I/Users/marius/petsc-3.13.0/macx/include -I/Users/marius/petsc-3.13.0/include -Isrc/include -I/Users/marius/Projects/cellrank/.tox/py38-macos/lib/python3.8/site-packages/numpy/core/include -I/Users/marius/Projects/cellrank/.tox/py38-macos/include -I/Users/marius/miniconda3/envs/test_cr_dev/include/python3.8 -c src/libpetsc4py.c -o build/temp.macosx-10.9-x86_64-3.8/macx/src/libpetsc4py.o
    In file included from src/libpetsc4py.c:6:
    src/libpetsc4py/libpetsc4py.c:29354:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
      0, /*tp_print*/
      ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
        Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
        ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
    #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                         ^
    In file included from src/libpetsc4py.c:6:
    src/libpetsc4py/libpetsc4py.c:29433:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
      0, /*tp_print*/
      ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
        Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
        ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
    #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                         ^
    In file included from src/libpetsc4py.c:6:
    src/libpetsc4py/libpetsc4py.c:29512:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
      0, /*tp_print*/
      ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
        Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
        ^
    /Users/marius/miniconda3/envs/test_cr_dev/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
    #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))