Wrong quality scores for GATK

Hi,
I'm getting an error when doing variant calling on a very high coverage illumina dataset:

ERROR MESSAGE: SAM/BAM/CRAM file htsjdk.samtools.SamReader$PrimitiveSamReaderToSamReaderAdapter@5ed88e31 appears to be using the wrong encoding for quality scores: we encountered an extremely high quality score of 62. Please see https://www.broadinstitute.org/gatk/guide/article?id=6470 for more details and options related to this error.

I read that I should add a flag " --fix_misencoded_quality_scores" to GATK run. My problem is that I can't
seem to find a way to add that option. I tried to add:

resources:
gatk-haplotype:
options: [--fix_misencoded_quality_scores]

To the config.yaml but it didn't do the trick. Is there a way to customize additional flags for specific tools?
Thanks,
Eyal

Just an update. I tried running again with "illumina" quality scores and got an error that the supplied quality scores are wrong. I changed a line in gatk.py to be:

if _joint_calling(items) or any("gvcf" in dd.get_tools_on(d) for d in items):
params += ["--emitRefConfidence", "GVCF", "--variant_index_type", "LINEAR",
"--variant_index_parameter", "128000","--fix_misencoded_quality_scores"]

Not saying it's pretty but I'm trying it again, it might work?

It didn't work, with an error that there is a mixture of valid and invalid quality values...

Eyal;
Thanks for the detailed report. It sounds like there is something problematic about your BAM file. How as it generated? If you have the original fastqs and know the quality encoding you could try aligning with bcbio instead of using the pre-aligned BAM. Alternatively you could use bam_clean to try and fix the input BAM:
http://bcbio-nextgen.readthedocs.io/en/latest/contents/configuration.html#alignment
It sounds like something like:
aligner: false
bam_clean: picard
quality_format: illumina

might help rescue the BAM. Hope this helps.

Thanks for the help.
I'm actually realigning the whole thing from fastq, and specifying quality_format: illumina gives an error early that the wrong quality format was specified. Also, as I wrote, having GATK fix the scores doesn't work either since apparently only some are incompatible and some aren't.
These are extremely high coverage sequencing of specific c. elegans strains, way beyond what you would get for human (because of the smaller genome). Could this cause higher qualities than expected and result in this error?

Eyal;
High depth won't affect the quality scores, those are individually encoded for each read. I'm not sure how you got a mix of different quality scores but it sounds like you'll have to resolve these to a single encoding prior feeding into bcbio. Most tools won't correctly handle a mix of encodings.
You'd probably have to write something custom to split your fastq file into the different encodings and the wikipedia FASTQ page has a nice description of expected quality scores for each encoding:
https://en.wikipedia.org/wiki/FASTQ_format#Encoding
Hope this helps.

Ok, thanks I understand now. Will try to figure this out.


Update free-programming-books.md

Add in a resource to 'Machine Learning' section. The LambdaSchool mini bootcamp for machine learning. Very helpful and free.

Before I look at this, why in the books list, not in the free courses list?

I may have put this in the incorrect place then. My apologies @eshellman


Error on pulling links

This is the error I get when running the script to download links - sudo python kisscartoon.py -l -s [link]
It occurs about halfway through the list
Traceback (most recent call last):
File "kisscartoon.py", line 85, in
qualitys = get_episode(episode, args.quiet, args.low_quality)
File "kisscartoon.py", line 43, in get_episode
print("Quality : " + quali[0])
IndexError: list index out of range

Can you give me the link you're trying to access ?

http://kisscartoon.me/Cartoon/Bobby-s-World

I can reproduce it now. We're triggering a CAPTCHA on Kisscartoon :(

I used it to download and go through season 4 ep 1 before it seemed to trigger an error. I will retry tonight though maybe add in the delay for the links. Thank you! Will let you know how it turns out

it occured again during download this time jsut fyi

Unfortunately I can't really do anything besides adding a delay

And it would be a delay like 5 minutes so we dont trigger the captcha


screensaver downloading continuously overnight

I'm seeing a network where 5-6 computers using this screensaver have downloaded about 2TB of MOV files.  Is it possible the latest version has some cache issue that is preventing cache from operating correctly, and having the same files downloaded over and over?

I have run into this as well.  Downloads constantly while screensaver is showing.

This should be fixed in V1.4, you can now disable streaming and cache videos individually.


Create initial Cronosmainnet.md

Further editing to make upon details are confirmed.

Thanks @aw126, let me picked this up in #64


Cassandra storage: service_name_index and service_span_name_index tables are not getting populated.

I am trying out Zipkin on a Clojure project with Cassandra as storage backend. But traces are not being displayed as service_name_index and service_span_name_index tables are empty. If I use default in-memory database, traces are shown correctly. Facing the same issue on both versions of cassandra 2.7.2 and 3.X. What would be the problem here?

I ran Zipkin with --logging.level.com.datastax.driver.core.QueryLogger=trace and insert queries for service_name_index and service_span_name_index did not appear.
The instrumentation library I am using is old one and does not send span.timestamp and duration. Could that be the reason?

we'll need the json for the spans that work in the in-mem, but not in cassandra. can you paste that?

ps @guilespi @aliceliang @strongh if any of you are interested in continuing work on clj-zipkin, let us know. for example, we've moved some language specific repositories into the openzipkin or so others can help maintain them. would be nice to keep the fire burning.

I have thrift serialized data that clj-zipkin is sending to scribe.
#ns525700959.Span{:trace_id 10339031, :name Renderer, :id 9887479, :parent_id 3778525, :annotations (#ns_1186963580.Annotation{:timestamp<PHONE_NUMBER>174000, :value end:Renderer, :host #ns1048748842.Endpoint{:ipv4<PHONE_NUMBER>, :port 0, :service_name RendererService}, :duration 0} #ns_1186963580.Annotation{:timestamp<PHONE_NUMBER>071000, :value start:Renderer, :host #ns1048748842.Endpoint{:ipv4<PHONE_NUMBER>, :port 0, :service_name RendererService}, :duration 0}), :binary_annotations [], :debug 0}
I tried to get JSON by running Zipkin jar in DEBUG mode but could not collect it. Any way to capture it?

Got the json from your comment in Gitter channel.
[   {     "traceId": "0000000000043ece",     "id": "00000000005245a2",     "name": ":get:/",     "timestamp":<PHONE_NUMBER>593000,     "duration": 919000,     "annotations": [       {         "timestamp":<PHONE_NUMBER>593000,         "value": "start::get:/",         "endpoint": {           "serviceName": "testservice"         }       },       {         "timestamp":<PHONE_NUMBER>512000,         "value": "end::get:/",         "endpoint": {           "serviceName": "testservice"         }       }     ],     "debug": true   },   {     "traceId": "0000000000043ece",     "id": "0000000000db87ad",     "name": "renderer",     "parentId": "00000000005245a2",     "timestamp":<PHONE_NUMBER>097000,     "duration": 105000,     "annotations": [       {         "timestamp":<PHONE_NUMBER>097000,         "value": "start:Renderer",         "endpoint": {           "serviceName": "rendererservice"         }       },       {         "timestamp":<PHONE_NUMBER>202000,         "value": "end:Renderer",         "endpoint": {           "serviceName": "rendererservice"         }       }     ],     "debug": true   } ]

ps the ip is very invalid.. that's why it isn't showing up in the json

ip32 overflows beyond <IP_ADDRESS>. I was testing on my machine with intranet IP address 192.168.XXX.XXX. That's why I changed it to ip64.

raised this to help get you along
https://github.com/sachinpkale/clj-zipkin/pull/1

Thanks for these changes. Much useful. I made few corrections to it and added it to separate branch. Spans are being stored in Cassandra successfully.

whoo hoo!


Touchscreen doesn't seem to work on IE

Touschreen drags Droplet in Pencilcode on a Microsoft Surface in IE don't fire, and instead get interpreted as a back- or forward- swipe by the browser to perform the back- or forward- button operations.

Hi @dabbler0
Shall i try working on this?
Or is there anyone who is working on this already?


No such file or directory: train_receiver_both_original.txt

hi, thanks for sharing this impressive work first.
I'd like to run train_receiver_model.py with IS_ORIGINAL=True, but I got error messages like:
[Errno 2] No such file or directory: '/home/....../Persona-Dialogue-Generation/data/ConvAI2/train_receiver_both_original.txt'
  File "/home/....../Persona-Dialogue-Generation/tasks/convai2receiver/agents.py", line 53, in yield_persona

I found that the persona_path was set to receiver_both_original in line 256 of tasks/convai2receiver/agents.py. However, the file was not contained by the original Convai2 dataset. 😄 Could you please give me a hint about what this file is actually?

I noticed there's a file named build_data.py, and I'll try it first.

problem solved.


refactor calculateFragments...

...to return a value instead of mutating i…ts argument.
It's not something important but it makes the code a bit more readable and allows to get rid of the type coercion here

@wizardzloy thanks for this!


hooks are not installed

Hi
Just installed gitolite and redmine_git_hosting on our redmine 3.3. The hooks can't be installed for some reason. Log shows this:
==> log/git_hosting.log <==
2017-05-29 14:38:51 +0000 [INFO] Hook 'redmine_gitolite.rb' does not exist, installing it ...
2017-05-29 14:38:51 +0000 [INFO] Installing hook '/home/redmine/redmine-3.3.3/plugins/redmine_git_hosting/contrib/hooks/post-receive/redmine_gitolite.rb' in '/home/git/local
/hooks/common/post-receive'
2017-05-29 14:38:51 +0000 [ERROR] Non-zero exit code pid 29061 exit 1 for `sudo -n -u git -i sh`
2017-05-29 14:38:51 +0000 [INFO] Hook 'mail_notifications.py' does not exist, installing it ...
2017-05-29 14:38:51 +0000 [INFO] Installing hook '/home/redmine/redmine-3.3.3/plugins/redmine_git_hosting/contrib/hooks/post-receive/mail_notifications.py' in '/home/git/local
/hooks/common/post-receive.d/mail_notifications'
2017-05-29 14:38:51 +0000 [ERROR] Non-zero exit code pid 29130 exit 1 for `sudo -n -u git -i sh`
2017-05-29 14:38:51 +0000 [INFO] Hook 'git_hosting_config.rb' does not exist, installing it ...
2017-05-29 14:38:51 +0000 [INFO] Installing hook '/home/redmine/redmine-3.3.3/plugins/redmine_git_hosting/contrib/hooks/post-receive/lib/git_hosting_config.rb' in '/home/git/local
/hooks/common/lib/git_hosting/config.rb'
2017-05-29 14:38:51 +0000 [ERROR] Non-zero exit code pid 29199 exit 1 for `sudo -n -u git -i sh`
2017-05-29 14:38:51 +0000 [INFO] Hook 'git_hosting_custom_hook.rb' does not exist, installing it ...
2017-05-29 14:38:51 +0000 [INFO] Installing hook '/home/redmine/redmine-3.3.3/plugins/redmine_git_hosting/contrib/hooks/post-receive/lib/git_hosting_custom_hook.rb' in '/home/git/local
/hooks/common/lib/git_hosting/custom_hook.rb'
2017-05-29 14:38:51 +0000 [ERROR] Non-zero exit code pid 29268 exit 1 for `sudo -n -u git -i sh`
2017-05-29 14:38:52 +0000 [INFO] Hook 'git_hosting_http_helper.rb' does not exist, installing it ...
2017-05-29 14:38:52 +0000 [INFO] Installing hook '/home/redmine/redmine-3.3.3/plugins/redmine_git_hosting/contrib/hooks/post-receive/lib/git_hosting_http_helper.rb' in '/home/git/local
/hooks/common/lib/git_hosting/http_helper.rb'
2017-05-29 14:38:52 +0000 [ERROR] Non-zero exit code pid 29337 exit 1 for `sudo -n -u git -i sh`
2017-05-29 14:38:52 +0000 [INFO] Hook 'git_hosting_hook_logger.rb' does not exist, installing it ...
2017-05-29 14:38:52 +0000 [INFO] Installing hook '/home/redmine/redmine-3.3.3/plugins/redmine_git_hosting/contrib/hooks/post-receive/lib/git_hosting_hook_logger.rb' in '/home/git/local
/hooks/common/lib/git_hosting/hook_logger.rb'
2017-05-29 14:38:52 +0000 [ERROR] Non-zero exit code pid 29406 exit 1 for `sudo -n -u git -i sh`
2017-05-29 14:38:52 +0000 [INFO] Hook 'git_hosting_post_receive.rb' does not exist, installing it ...
2017-05-29 14:38:52 +0000 [INFO] Installing hook '/home/redmine/redmine-3.3.3/plugins/redmine_git_hosting/contrib/hooks/post-receive/lib/git_hosting_post_receive.rb' in '/home/git/local
/hooks/common/lib/git_hosting/post_receive.rb'
2017-05-29 14:38:52 +0000 [ERROR] Non-zero exit code pid 29475 exit 1 for `sudo -n -u git -i sh`
2017-05-29 14:38:52 +0000 [INFO] Hook 'git_multimail.py' does not exist, installing it ...
2017-05-29 14:38:52 +0000 [INFO] Installing hook '/home/redmine/redmine-3.3.3/plugins/redmine_git_hosting/contrib/hooks/post-receive/lib/git_multimail.py' in '/home/git/local
/hooks/common/post-receive.d/git_multimail.py'
2017-05-29 14:38:52 +0000 [ERROR] Non-zero exit code pid 29544 exit 1 for `sudo -n -u git -i sh`
2017-05-29 14:38:52 +0000 [INFO] Set Git global parameter : redminegitolite.redmineurl (https://redmine.doc.coach/githooks/post-receive/redmine)
2017-05-29 14:38:52 +0000 [INFO] Set Git global parameter : redminegitolite.debugmode (false)
2017-05-29 14:38:53 +0000 [INFO] Set Git global parameter : redminegitolite.asyncmode (true)
2017-05-29 14:38:53 +0000 [INFO] Set Git global parameter : multimailhook.mailer (smtp)
2017-05-29 14:38:53 +0000 [INFO] Set Git global parameter : multimailhook.environment (gitolite)
2017-05-29 14:38:53 +0000 [INFO] Set Git global parameter : multimailhook.smtpauth (false)
2017-05-29 14:38:53 +0000 [INFO] Set Git global parameter : multimailhook.smtpserver (localhost)
2017-05-29 14:38:53 +0000 [INFO] Set Git global parameter : multimailhook.smtpport (25)

This is the versions we're running:
Environment:
  Redmine version                3.3.3.stable
  Ruby version                   2.3.1-p112 (2016-04-26) [x86_64-linux]
  Rails version                  <IP_ADDRESS>
  Environment                    production
  Database adapter               PostgreSQL
SCM:
  Subversion                     1.7.14
  Git                            2.13.0
  Filesystem
  Xitolite                       2.13.0
Redmine plugins:
  redmine_agile                  1.4.2
  redmine_bootstrap_kit          0.2.5
  redmine_git_hosting            1.2.2
  redmine_slack                  0.2

gitolite:
hello redmine_gitolite_admin_id_rsa, this is git@rhododendron running gitolite3 v3.6.6-11-gd77bf42 on git 2.13.0

sudo works as expected (I can sudo -iu git as redmine and it works without password). I can create repos and clone them, but pushes are not registered by redmine.

this is what happens when I click on Install hooks
Thanks in advance for any help! It is appreciated.

Setting the log level to DEBUG I found this:
2017-05-29 16:37:14 +0000 [DEBUG] Getting Gitolite version...
2017-05-29 16:37:14 +0000 [DEBUG] Non-zero exit code pid 18139 exit 1 for `sudo -n -u git -i sh`
2017-05-29 16:37:14 +0000 [ERROR] Non-zero exit code pid 18139 exit 1 for `sudo -n -u git -i sh`
2017-05-29 16:37:14 +0000 [DEBUG] Getting Gitolite version...
2017-05-29 16:37:14 +0000 [DEBUG] Getting Gitolite version...
2017-05-29 16:37:14 +0000 [INFO] Hook 'git_hosting_post_receive.rb' does not exist, installing it ...
2017-05-29 16:37:14 +0000 [DEBUG] Getting Gitolite version...
2017-05-29 16:37:15 +0000 [DEBUG] Getting Gitolite version...
2017-05-29 16:37:15 +0000 [INFO] Installing hook '/home/redmine/redmine-3.3.3/plugins/redmine_git_hosting/contrib/hooks/post-receive/lib/git_hosting_post_receive.rb' in '/home/git/local
/hooks/common/lib/git_hosting/post_receive.rb'
2017-05-29 16:37:15 +0000 [DEBUG] Getting Gitolite version...
2017-05-29 16:37:15 +0000 [DEBUG] Non-zero exit code pid 18208 exit 1 for `sudo -n -u git -i sh`
2017-05-29 16:37:15 +0000 [ERROR] Non-zero exit code pid 18208 exit 1 for `sudo -n -u git -i sh`
2017-05-29 16:37:15 +0000 [DEBUG] Getting Gitolite version...
2017-05-29 16:37:15 +0000 [DEBUG] Getting Gitolite version...
2017-05-29 16:37:15 +0000 [INFO] Hook 'git_multimail.py' does not exist, installing it ...
2017-05-29 16:37:15 +0000 [DEBUG] Getting Gitolite version...
2017-05-29 16:37:15 +0000 [DEBUG] Getting Gitolite version...
2017-05-29 16:37:15 +0000 [INFO] Installing hook '/home/redmine/redmine-3.3.3/plugins/redmine_git_hosting/contrib/hooks/post-receive/lib/git_multimail.py' in '/home/git/local
/hooks/common/post-receive.d/git_multimail.py'
2017-05-29 16:37:15 +0000 [DEBUG] Getting Gitolite version...
2017-05-29 16:37:15 +0000 [DEBUG] Non-zero exit code pid 18277 exit 1 for `sudo -n -u git -i sh`
2017-05-29 16:37:15 +0000 [ERROR] Non-zero exit code pid 18277 exit 1 for `sudo -n -u git -i sh`
2017-05-29 16:37:15 +0000 [DEBUG] Getting Gitolite version...

Might there be a problem with it finding the gitolite version? It does not say success or failure.

Outputting stderr and some other stuff yields the following:
command: sudo
args: ["-n", "-u", "git", "-i", "sh"]
opts: {:stdin_data=>"cat <<\\EOF >/home/git/local\n/hooks/common/post-receive \n#!/usr/bin/env ruby\n\n#
This file was placed here by Redmine Git Hosting. It makes sure that your pushed commits\n# will be proce
ssed properly.\n\nrefs = ARGF.read\nrepo_path = Dir.pwd\n\nrequire_relative 'lib/git_hosting/http_helper'
\nrequire_relative 'lib/git_hosting/hook_logger'\nrequire_relative 'lib/git_hosting/config'\nrequire_rela
tive 'lib/git_hosting/post_receive'\nrequire_relative 'lib/git_hosting/custom_hook'\n\nif GitHosting::Pos
tReceive.new(repo_path, refs).exec && GitHosting::CustomHook.new(repo_path, refs).exec\n  exit 0\nelse\n
 exit 1\nend\nEOF", :binmode=>true}
stderr: sh: line 1: /home/git/local: Is a directory

I managed to get it to work (in a hacky way). I changed the capture method in lib/redmine_git_hosting/utils/exec.rb to look like this:
<snip>
      def capture(command, args = [], opts = {}, &block)
        merge_output = opts.delete(:merge_output) { false }
        unless opts[:stdin_data].nil?
          opts[:stdin_data].sub!("local\n/hooks", "local/hooks")
        end
        stdout, stderr, code = execute(command, args, opts, &block)
<snip>

Now it works as expected. But there seems to have been a bug introduced in the generation of stdin_data. Someone familiar with the codebase could probably figure this out quickly, I did not have any luck :)
I will still leave this open for the moment, curios to see if this is some weirdness on my box or a general problem.

Here's the solution #646


authorize

its a simple change. no need for authorize_ee.ipynb no more.
just:
import ee
ee.Initialize()

Oh cool @eloiup didnt know. i wasn't working with the Python lately. Thanks man

the notebooks were quite helpful, i just started trying out the api, got a bunch of doubts about it, sent you an email, if its not too much trouble any help is appreciated


Support lepton3

Thank you for your 'LeptonModule' repositoy.
I used your origin/master branch, but lepton2.5 hangs in few minutes.
I forked from https://github.com/yyasuda/LeptonModule .
And I added Lepton3 support for raspberrypi_video.

Thanks for sending this pull request! The changes looks very well considered, and I would like to merge if it is working for everyone using this repository. As soon as I get the chance, I'll try this out on my own setup. I will appreciate feedback from anyone else watching this repo as well.

Revert a function.(automatic scaling range detection)
I got a good suggestion.

the original automatic range adjustment feature is also convenient, especially for the first time user.

So first off, I like the way you put this together with the command line options to choose the Lepton type and the color maps. This is a good contribution.
It's really not usable for me though. Does this run smoothly for you? On my rpi (a new pi 4), it starts off with a few frames and then it mostly just hangs. This is with a few different SPI speeds, and I also tried to nice it all the way down to -20. To be fair, I haven't had much luck running any Lepton 3 code that is based on this raspberrypi_video code in the past either.
Hopefully there's something wrong with the way I'm running this, and that there's just a little more guidance required. Can you think of anything that I should try to make this work?

I've been testing only in the following environment. (RPi3 B+ and Raspbian-stretch)
https://github.com/higuchi-toshio-intec/LeptonModule/wiki/Environment
It works like this video on my environment. It looks working not bad.
https://www.youtube.com/watch?v=DWNsL8pUeFU
Maybe something is different on your rpi4 and my rpi3b+.
I don't know what should I check about this. sorry.

Wolud you run this branch ?
https://github.com/higuchi-toshio-intec/LeptonModule/tree/support_lepton3_logs
Please check difference by git.
$ git diff support_lepton3 support_lepton3_logs
I think there are some cases (failed to display the image)

rpi is too slow to load data from spi bus.
but rpi4 is faster than rpi3b+.
Failed to get segment number.
Offen I got segment number '0' on my environment.
Got zero-value
Sometimes I got value '0' in the frame of lepton on my environment.

** but I don't know the root cause **
First, please execute with '-d 5' parameter.
Probably you can see 'wrong segment number' or 'zero-value'.
$ sudo nice -n -20 ./raspberrypi_video -cm 1 -tl 3 -min 30000 -max 32000 -d 5
Many-many logs are output with the following command.
You can see the frequency of output.
$ sudo nice -n -20 ./raspberrypi_video -cm 1 -tl 3 -min 30000 -max 32000 -d 10

With -d 5, I see almost all 'wrong segment number continuously' errors, for hundreds of times without a frame.
It's funny, with -d 10, I will see a 4 or so 'wrong segment number 0' printouts in a row, then a 'continuously 4 times [RECOVERED]' and this cycle repeats over and over, but through it I actually end up getting a video stream.
So it would seem slowing it down with this printing is helping? Could be timing related to the different raspberry pi.

I think the commit '652c0bf' is not so bad. Probably useful.
https://github.com/higuchi-toshio-intec/LeptonModule/commit/652c0bf4516cdd06e2abe0f80691e43e42d79bc7

Sometimes Lepton 3.5 is working so good.
But sometimes it's working so bad.
I wanted to see all segment numbers in the frame.
Then I add some temporary steps. See this branch 'support_lepton3_logs'
https://github.com/higuchi-toshio-intec/LeptonModule/tree/support_lepton3_logs
Please see the differences.
$ git diff support_lepton3 support_lepton3_logs LeptonThread.cpp

I got 2 log files.

'read_segment_number.log'
'read_segment_number-with-d10.log'

Ignore character '0' in the log file.
(but, Why lepton 3.5 could not return segment number?)

'read_segment_number.log'

without '-d' parameter
Some lines have characters from '1' to '4' .  This is GOOD.
Some lines stand out with the letters "1" and "4" only.  This is not good.

WHY? WHY? WHY?

'read_segment_number-with-d10.log'

with '-d 10' parameter
Many lines have characters from '1' to '4' .  This is GOOD.

Actually, I'm ready to make a next pull request.
https://github.com/higuchi-toshio-intec/LeptonModule/tree/reduce_qt_dependencies/software/raspberrypi_qt
These branch 'support_lepton3' and 'reduce_qt_dependencies' have same behavior.
I changed the structure of the source file.
And this branch 'reduce_qt_dependencies_simple' is most simple version.

without Qt

Method 'LeptonAction::setPixel' does nothing.

Read frame data from SPI
Print segment number

https://github.com/higuchi-toshio-intec/LeptonModule/tree/reduce_qt_dependencies_simple/software/raspberrypi_qt
I execute this and got following outputs.
These look right behavior.
$ ./raspberrypi_video -tl 3 -cm 1 -min 30000 -max 32000
001234000012340000123400
001234000012340000123400
001234000012340000123400
001234000012340000123400
001234000012340000123400
001234000012340000123400
001234000012340000123400
001234000012340000123400
001234000012340000123400
001234000012340000123400
001234000012340000123400
001234000012340000123400
001234000012340000123400
001234000012340000123400
001234000012340000123400
001234000012340000123400
001234000012340000123400
001234000012340000123400
001234000012340000123400

Probably image display is a heavy process for rpi.

Please try this version.

Thanks for your persistence with this. This looks like a very good update, I'll try it out as soon as I can.

OK, I tried to run this again on my pi4 and continued to have the same problems, so @matthewnavarro helped me to run some independent tests on a few other boards, and here's what he found:
Partially Works On (runs for a few seconds and stops):
RPi4
RPi3
Running Raspbian Buster

Works on:
RPi3
Running Raspbian Stretch

Does Not Work on:
RPi4
Running Raspbian Stretch (RPi4 does not work with stretch)

So it would seem that the problems with the stopping stream are somehow OS related. I'm thinking maybe the newer version of QT is messing things up, but this is just a guess.
This is totally consistent with what we're seeing in this thread, since you've got a pi3 running stretch.
Note that this code does work with fine with a pi4 running buster using an 80x60 lepton.
I'd like to spend a little bit of time trying to understand what the issues are with buster and the lepton 3. The code you've contributed looks great. But I'd like to hold off merging this before understanding what's going on with the newer OS.

Thank you for your information.
I installed buster on my RPi3.
And I saw that my lepton stopped in a short time.
Please try with '-ss 30' option, like this.
$ ./raspberrypi_video -tl 3 -cm 1 -ss 30 -min 30000 -max 32000
My lepton does not look so bad.

Its appears that there is a bug with the RPi4 SPI controller that scales the SPI clock frequency with the main clock frequency. So when the processor goes into idle the SPI clock is halved and causes issues.
https://www.raspberrypi.org/forums/viewtopic.php?t=246164
If you run the following to keep the processor from going idle, the code works perfectly:
sudo apt-get install stress
stress --cpu 1 &
DISPLAY=:0 ./raspberrypi_video -cm 1 -tl 3 -min 30000 -max 32000

Perhaps we can turn off frequency scaling or find another fix for the SPI kernel driver that prevents this errant behavior.
https://twitter.com/QwertyEmbedded/status/1200274725311664128

This was a good find.
We can turn off the frequency scaling by setting the performance governor:
sudo sh -c "echo performance > /sys/devices/system/cpu/cpufreq/policy0/scaling_governor"

I see that /sys/kernel/debug/clk/clk_summary doesn't appear to accurately reflect the changes that are happening when the cpu frequency changes

Confirmed working with PureThermal Breakout for FLIR Lepton with a Raspberry Pi4 and Lepton 3.5. On commit 2c0ef01, Raspian Buster release 10

Code merged, thanks a lot everyone!


How long does it take for the bot to accept the collaborator request?

I added lighthousebot as a collaborator and I have bee waiting for a response for close to 12 hours. How long does it take for the bot to accept the request? I would have thought it to be instant. Is this a manual process? Am I missing a step somewhere?
I went to settings > collaborators > entered the bot name and clicked on add collaborator.

Waiting for it to accept, too. I was expecting it to be automatic; if there's any process involved I'd be happy to create pull to update the README.md stating so 😃

I've been waiting for multiple collab requests for almost 2 weeks now, it'd be great to have some clarity on what the timeline/requirements is for collaboration requests to be accepted.

I have the same issue and I need to use it ASAP. 👍
Can someone of Lighthouse explain it.
Best Regards, @ebidel 💯

+1
We are also waiting for lighthousebot to accept the request since May 5th.
That's 20 days.
We just removed and added again but still waiting.

@addyosmani is someone looking after this?

@khempenius I'm trying to locate the Lighthousebot requests but don't seem to have had notifications about them. Have you received any?

@addyosmani I have not received any requests.

Hi Guys,
Any resolution about it? Or something that we can do or help?
Best Regards, @ebidel  @addyosmani @khempenius

I added lighthousebot as a collaborator and I have bee waiting for a response for close to 12 hours. How long does it take for the bot to accept the request? @ebidel @addyosmani

Did you receive an email with an API key? It looks like the form is failing
to send out emails in some cases, although I just tried it myself and it
went through. If you don't receive an email try to fill it out again.
As for the bot accepting the collaborative GitHub request I don't have
access to those emails anymore. Someone at Google will need to log in to
the bot account and accept the requests.
On Fri, May 31, 2019, 3:19 AM Sumit Gupta<EMAIL_ADDRESS>wrote:

I added lighthousebot as a collaborator and I have bee waiting for a
response for close to 12 hours. How long does it take for the bot to accept
the request? @ebidel https://github.com/ebidel @addyosmani
https://github.com/addyosmani
—
You are receiving this because you were mentioned.
Reply to this email directly, view it on GitHub
https://github.com/GoogleChromeLabs/lighthousebot/issues/55?email_source=notifications&email_token=AAB2FADDSEDB57OPNVJUPADPYD3URA5CNFSM4GYMINHKYY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGODWU2X3Q#issuecomment-497658862,
or mute the thread
https://github.com/notifications/unsubscribe-auth/AAB2FAEKPHWKEOH5TPRJBDTPYD3URANCNFSM4GYMINHA
.

@ebidel @addyosmani We are excited to have lighthouse checks as part of our CI pipeline. Getting the lighthousebot collaborator is the last step.
Any ideas on how we can reach out to "someone at google" so they can help get these requests approved?

@ebidel Hi, yes I did receive an email as an API key, but lighthouse bot has yes been added as a collaborator it is waiting for a response from lighthouse bot.

+1

Ok. Someone with credential access to the lighthouse bot account will need to approve the requests coming in. Unfortunately, I'm not sure got that completely figured out after I left the team. We were working with GH support to verify @addyosmani and @khempenius 's emails for the account.

Hey @addyosmani @khempenius  has this been resolved? I sent a collaborator invite a couple of hours ago but I'm not sure when to expect for it to go through.

@ebidel When you get a chance, could you share (email) where you were getting these approval requests sent through to? Unfortunately even with access to the lighthousebot GH account, we're still not receiving these requests.
Folks: Katie and I discussed it. If we're unable to get Lighthousebot sorted in the coming weeks, we're going to accelerate getting together working examples of LightWallet (official perf budgeting in Lighthouse) working in CI and a codelab so you can still get the perf budgeting portion of this workflow at least.

Can someone try sending through new collaborator requests again so we can test this works now? :)
@khempenius I've gone ahead and:

Created a new email address for Lighthousebot notifications (lighthousebotofficial at gmail, you should have access)
Added this as the primary account notification email for lighthousebot
Verified email notifications should be coming through correctly here now

Although I have no way of receiving old lighthousebot approval requests, we should now be able to receive them for any new users. Keeping fingers crossed at least...

Sending a new request right away

I've approved 7 requests that came through last night. Feel free to keep them coming. I've confirmed with at least one user everything is working as expected now.
To close this bug report up: the collaborator request currently requires manual approval. Katie and I will do our best to process these every few days. As we work on more official CI solutions, we'll be looking at how to automate everything to drastically reduce time between requests and approvals.

Thanks @addyosmani, lighthousebot is now added as a collaborator.

Big thanks to @addyosmani & @ebidel for getting this sorted out!
I just sent in several collab requests so hopefully we'll be able to get this slotted into our CI Pipeline.


Update OSDM-online-api-v3.1.0.yml - ProductType added

ProductType was added in 3.0.3 but missing in 3.1

@CGantert345 None of changes to 3.0.3 have been inserted into 3.1.0. I thought we would like to make via UML modelling once Andreas is back.

@CGantert345 None of changes to 3.0.3 have been inserted into 3.1.0. I thought we would like to make via UML modelling once Andreas is back.

Hello Josef, if we want to create a release end of the week we should include them, as the release would include 3.1. Are three many changes missing from your updates? In my updates i have included the 3.1.

Hello Clemens,
I don't know what everything is missing since some changes were backports and some were intended to be incorporated both into 3.0 and 3.1.
I could review in the evening and write the notes down for you.
Tomorrow-Thursday I am in Vienna... or we can work on that on Friday if that is time feasible yet.
Josef
------- Original Message -------
On Tuesday, October 3rd, 2023 at 14:17, CGantert345 @.***> wrote:

@.***(https://github.com/CGantert345) None of changes to 3.0.3 have been inserted into 3.1.0. I thought we would like to make via UML modelling once Andreas is back.

Hello Josef, if we want to create a release end of the week we should include them, as the release would include 3.1. Are three many changes missing from your updates? In my updates i have included the 3.1.
—
Reply to this email directly, view it on GitHub, or unsubscribe.
You are receiving this because your review was requested.Message ID: @.***>

Maybe we can work on that on Friday. There are not that many topics on the list.
Clemens
Von: Josef Petrák @.>
Gesendet: Dienstag, 3. Oktober 2023 14:22
An: UnionInternationalCheminsdeFer/OSDM @.>
Cc: Clemens Gantert @.>; Mention @.>
Betreff: Re: [UnionInternationalCheminsdeFer/OSDM] Update OSDM-online-api-v3.1.0.yml - ProductType added (PR #347)
Hello Clemens,
I don't know what everything is missing since some changes were backports and some were intended to be incorporated both into 3.0 and 3.1.
I could review in the evening and write the notes down for you.
Tomorrow-Thursday I am in Vienna... or we can work on that on Friday if that is time feasible yet.
Josef
------- Original Message -------
On Tuesday, October 3rd, 2023 at 14:17, CGantert345<EMAIL_ADDRESS>wrote:

@.***(https://github.com/CGantert345)mailto:***@***.***(https://github.com/CGantert345) None of changes to 3.0.3 have been inserted into 3.1.0. I thought we would like to make via UML modelling once Andreas is back.

Hello Josef, if we want to create a release end of the week we should include them, as the release would include 3.1. Are three many changes missing from your updates? In my updates i have included the 3.1.

Reply to this email directly, view it on GitHub, or unsubscribe.
You are receiving this because your review was requested.Message ID<EMAIL_ADDRESS>

Reply to this email directly, view it on GitHubhttps://github.com/UnionInternationalCheminsdeFer/OSDM/pull/347#issuecomment-1744854169, or unsubscribehttps://github.com/notifications/unsubscribe-auth/ANS4YNKC23KHUZGPFLLMJBDX5P7P7AVCNFSM6AAAAAA5QZR3Z2VHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTONBUHA2TIMJWHE.
You are receiving this because you were mentioned.Message ID<EMAIL_ADDRESS>
Pflichtangaben anzeigenhttps://www.deutschebahn.com/pflichtangaben/20231002
Nähere Informationen zur Datenverarbeitung im DB-Konzern finden Sie hier: https://www.deutschebahn.com/de/konzern/datenschutz

I will provide a single branch with multiple commits the contains all missing changes from 3.0.3 to 3.1.0. I will add these Product Types into my commit instead of the provisional ones provided before.


Test Issue for Francisca

To show Francisca how issues and branches work in GitHub.

Completed task, closing issue


merger dex throwing error in flutter

Execution failed for task ':app:mergeExtDexDebug'.

Could not resolve all files for configuration ':app:debugRuntimeClasspath'.
Failed to transform truecaller-sdk-3.0.0.aar (com.truecaller.android.sdk:truecaller-sdk:3.0.0) to match attributes {artifactType=android-dex, asm-transformed-variant=NONE, dexing-enable-desugaring=true, dexing-enable-jacoco-instrumentation=false, dexing-is-debuggable=true, dexing-min-sdk=22, org.gradle.category=library, org.gradle.libraryelements=jar, org.gradle.status=release, org.gradle.usage=java-runtime}.
Execution failed for DexingWithClasspathTransform: /Users/sunilsingh/.gradle/caches/transforms-3/f1dc8b5454f6833ac4870e59b83ad0ba/transformed/jetified-truecaller-sdk-3.0.0-runtime.jar.
Error while dexing.

@sunil-singh-chaudhary  Have you got any solution?

@sunil-singh-chaudhary Have you got any solution?

didnt remember but i think downgrading the distributionUrl=https://services.gradle.org/distributions/gradle-7.5-bin.zip will work check yours

@Prashant4900 Did this issue get resolved for you? If yes then can you please share the solution

Could not resolve all files for configuration ':app:debugRuntimeClasspath'.
Failed to transform truecaller-sdk-3.0.0.aar (com.truecaller.android.sdk:truecaller-sdk:3.0.0) to match attributes {artifactType=android-dex, asm-transformed-variant=NONE, dexing-enable-desugaring=true, dexing-enable-jacoco-instrumentation=false, dexing-is-debuggable=true, dexing-min-sdk=23, org.gradle.category=library, org.gradle.libraryelements=jar, org.gradle.status=release, org.gradle.usage=java-runtime}.
Execution failed for DexingWithClasspathTransform: C:\Users\train.gradle\caches\transforms-3\45f2ec39152985aa87b397544e3341c1\transformed\jetified-truecaller-sdk-3.0.0-runtime.jar.
Error while dexing.

     How we fix it ?


Test cases

Hey, I created a repository for wordle tests. You mentioned wanting to improve the tests for the matcher. Can also be useful for benchmarking purposes.
I tried to have it contain the minimum amount of test cases for every possible checking condition.
(I'm newly learning Rust and  your streams are very helpful. I generated the files with Rust as well. Tears were involved also the borrow checker is a bully!)

Nice! Just added a test suite that runs all of them :tada:


feature: intergrate holmes into mosn builtin extension.

Holmes: https://github.com/mosn/holmes

Created another https://github.com/mosn/mosn/pull/1974 to merge to develop branch first.
And we will merge to the master branch in the feature.


CrossMod Doesn't Load

So I got that message where I need to download Microsoft .NET, so I downloaded the .NET and after that the Visual C++ 2015 thing, but after I startup CrossMod, it doesn't give an error message, but I see this weird window (see attached file) for some seconds and then it just dissappears.... What should I do?

?
I tried out ssbh Editor, but that one doesn't load the textures on the model...

This is the ArcExplorer repository, which doesn't require .NET to be installed. Cross Mod is no longer maintained, so you should switch to SSBH Editor. If you're having issues with SSBH Editor, please make an issue with details on what files you're trying to load here: https://github.com/ScanMountGoat/ssbh_editor/issues

This is the ArcExplorer repository, which doesn't require .NET to be installed. Cross Mod is no longer maintained, so you should switch to SSBH Editor. If you're having issues with SSBH Editor, please make an issue with details on what files you're trying to load here: https://github.com/ScanMountGoat/ssbh_editor/issues

I already did that :D However I had a problem with SSBH too (it loaded fine), so I'll ask about that there then


[Bug] Logging uses wrong variable

Logging uses ENABLE_LOG instead of documented LOG_ENABLE.
Also, LOG_LEVEL is not used because of an error in the script not understanding when the variable is set.

Available in release 2022-11-28


[BSO] fixed LMS simulation command

Description:
doing simulation on bso sent minigame trips same as minigame command

Changes:
copied over osb's command

Other checks:

[x] I have tested all my changes thoroughly.

@ellipsis-dev

@ellipsis-dev make changes

@ellipsis-dev hide old reviews

@ellipsis-dev review and summerize


Support Elasticsearch 7.6

support ELK 7.6

https://opendistro.github.io/for-elasticsearch-docs/version-history/
1.6.0 released on April 2


[Installation]  Pip install not picking up the default set g++ version

Is there an existing issue for this?

[X] I have searched the existing issues

Have you followed all the steps in the FAQ?

[X] I have tried the steps in the FAQ.

Current Behavior
Install failing saying g++ version is greater than the maximum required by CUDA. Install is not picking the g++ version set using update-alternatives.
Error Line
  RuntimeError: The current installed version of x86_64-linux-gnu-g++ (11.3.0) is greater than the maximum required version by CUDA 11.3 (10.0.0). Please make sure to use an adequate version of x86_64-linux-gnu-g++ (>=5.0.0, <=10.0.0).

Environment
- GCC: gcc (Ubuntu 10.4.0-4ubuntu1~22.04) 10.4.0
- NVCC: Build cuda_11.3.r11.3/compiler.29745058_0
- PyTorch: 1.12.1+cu113
- PyTorch CUDA: 11.3

Full Error Log

Error Log
Traceback (most recent call last):
File "", line 2, in
File "", line 34, in
File "/tmp/pip-req-build-oy8cwpq8/setup.py", line 30, in
setup(
File "/home/menonsandu/github/venv-torchsparse/lib/python3.10/site-packages/setuptools/init.py", line 153, in setup
return distutils.core.setup(**attrs)
File "/usr/lib/python3.10/distutils/core.py", line 148, in setup
dist.run_commands()
File "/usr/lib/python3.10/distutils/dist.py", line 966, in run_commands
self.run_command(cmd)
File "/usr/lib/python3.10/distutils/dist.py", line 985, in run_command
cmd_obj.run()
File "/home/menonsandu/github/venv-torchsparse/lib/python3.10/site-packages/setuptools/command/install.py", line 68, in run
return orig.install.run(self)
File "/usr/lib/python3.10/distutils/command/install.py", line 619, in run
self.run_command('build')
File "/usr/lib/python3.10/distutils/cmd.py", line 313, in run_command
self.distribution.run_command(command)
File "/usr/lib/python3.10/distutils/dist.py", line 985, in run_command
cmd_obj.run()
File "/usr/lib/python3.10/distutils/command/build.py", line 135, in run
self.run_command(cmd_name)
File "/usr/lib/python3.10/distutils/cmd.py", line 313, in run_command
self.distribution.run_command(command)
File "/usr/lib/python3.10/distutils/dist.py", line 985, in run_command
cmd_obj.run()
File "/home/menonsandu/github/venv-torchsparse/lib/python3.10/site-packages/setuptools/command/build_ext.py", line 79, in run
_build_ext.run(self)
File "/usr/lib/python3.10/distutils/command/build_ext.py", line 340, in run
self.build_extensions()
File "/home/menonsandu/github/venv-torchsparse/lib/python3.10/site-packages/torch/utils/cpp_extension.py", line 434, in build_extensions
self._check_cuda_version(compiler_name, compiler_version)
File "/home/menonsandu/github/venv-torchsparse/lib/python3.10/site-packages/torch/utils/cpp_extension.py", line 836, in _check_cuda_version
raise RuntimeError(
RuntimeError: The current installed version of x86_64-linux-gnu-g++ (11.3.0) is greater than the maximum required version by CUDA 11.3 (10.0.0). Please make sure to use an adequate version of x86_64-linux-gnu-g++ (>=5.0.0, <=10.0.0).

Mitigated by running
sudo apt -y install gcc-9 g++-9
sudo update-alternatives --install /usr/bin/gcc gcc /usr/bin/gcc-9 9
sudo update-alternatives --install /usr/bin/g++ g++ /usr/bin/g++-9 9
export CXX=g++-9

Then ran the install command

After running the above command and running the pip install, it is crashing my system

Since TorchSparse has been upgraded to v2.1.0, could you please attempt to install the latest version? I will now close this issue, but please don't hesitate to reopen it if the problem persists.


logs for master components

Logs from kube-controller-manager, kube-apiserver and kube-scheduler pods are written to corresponding /var/log files

Can you rebase first, then run e2e test for this?

rebased and ran e2e.
Looks good.

LGTM


Get method works but set method does not seem to work

Hi Takashi,
Thanks for the easy to use and open source urdf visualization application!
I have a bug and probably its a fault on my end but I got the /get_joint_positions method to work and I can visualise it in the browser :

However, the set method gives the following error:
~$ curl -H "Accept: application/json" -H "Content-type: application/json" -X POST -d '{"names": ["Joint_1", "Joint_2", "Joint_3", "Joint_4", "Joint_5", "Joint_6", "Joint_7"], "positions": [ 0.0, −0.5236, 0.0, −1.0472, 0.0, −1.0472, 0.0]}'  http://<IP_ADDRESS>:7777/set_joint_positions | jq
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100   258  100   101  100   157    98k   153k --:--:-- --:--:-- --:--:--  251k
{
  "description": "error while parsing the JSON body",
  "cause": {
    "description": "JSON error",
    "cause": null
  }
}
~$ {
>   "is_ok": true,
>   "reason": ""
>
>

The urdf file is running in another terminal using urdf-viz <path-to-file>.urdf command and it works fine.

I copied your code, and sent it to jq, and it failed. It seems that your json is broken.
'{"names": ["Joint_1", "Joint_2", "Joint_3", "Joint_4", "Joint_5", "Joint_6", "Joint_7"], "positions": [ 0.0, −0.5236, 0.0, −1.0472, 0.0, −1.0472, 0.0]}'

I replaced your − with -, it worked.
I don't know about your keyboard, but it is similar to minus, but is not.
https://www.fileformat.info/info/unicode/char/2212/index.htm
Please use ascii code instead of unicode(−).

Ah, classical copy-paste error. Thanks, it works like a charm!
Closing the issue!


models.py Stream :: game_id, game_name attribute could be empty string

There are cases where streamer didn't set their game_name while streaming.
Unlike Twitch System automatically generates Tags after few seconds like I mentioned at https://github.com/TwitchIO/TwitchIO/issues/324 ,
game_id, game_name weren't generated until the streamer changes it.
There was no explanations in case of game_id and game_name sent as empty string in Twitch API Doc.
and couldn't find other cases like this in blogs, stackoverflow questions.

Twitch does indeed send these as empty strings rather than None or null type and the models reflect this, as per their documentation.
'game_id': '', 'game_name': '', 'type': 'live',

Whether we can change the model to make these Optional or not and return None by simply adding or None to the model will need to be discussed, or left as a change for 3.0

@chillymosh
yes, it will be better using @property decorators saving origin values(str) and then handling,
such as type casting string to int or empty string to None could be more useful for future maintenance
so does issue https://github.com/TwitchIO/TwitchIO/issues/325 and https://github.com/TwitchIO/TwitchIO/issues/324

We will not be changing this, as it is true to the API, and changes made to turn this to None or whatever constitute a breaking change.

Not in the docs, nor TwitchIO Doc
somebody just getting a exception not knowing what just happend in runtime
and you are saying API is working fine all time


Added test for failing nested given validation

Using nested given validations looks unsupported. This is just a simple test case to show the issue.

@darren987469 was just in this code in #1810, maybe interested in taking a look at this too?

@dblock I will have a look. Thanks

Look like can be closed :)

Yep, closing with https://github.com/ruby-grape/grape/pull/1811.


New LAMS error: Error [ERR_UNKNOWN_BUILTIN_MODULE]: No such built-in module: node:readline/promises

Hi Fabio! I'm getting the following error:

lams --reporting=save-yes
shell: /usr/bin/bash -e {0}
Parsing project...
Parsing done!
Getting manifest and exemption info...
Error [ERR_UNKNOWN_BUILTIN_MODULE]: No such built-in module: node:readline/promises
at new NodeError (node:internal/errors:387:5)
at Function.Module._load (node:internal/modules/cjs/loader:867:13)
at Module.require (node:internal/modules/cjs/loader:1100:19)
at require (node:internal/modules/cjs/helpers:108:18)
at Object. (/opt/hostedtoolcache/node/16.20.1/x64/lib/node_modules/@looker/look-at-me-sideways/lib/loaders/lams-exemptions.js:2:18)
at Module._compile (node:internal/modules/cjs/loader:1198:14)
at Object.Module._extensions..js (node:internal/modules/cjs/loader:1252:10)
at Module.load (node:internal/modules/cjs/loader:1076:32)
at Function.Module._load (node:internal/modules/cjs/loader:911:12)
at Module.require (node:internal/modules/cjs/loader:1100:19)
at require (node:internal/modules/cjs/helpers:108:18)
at module.exports (/opt/hostedtoolcache/node/16.20.1/x64/lib/node_modules/@looker/look-at-me-sideways/index.js:131:31)
at async /opt/hostedtoolcache/node/16.20.1/x64/lib/node_modules/@looker/look-at-me-sideways/cli.js:28:2 {
code: 'ERR_UNKNOWN_BUILTIN_MODULE'
}
Error: Process completed with exit code 1.

Searched your most recently merged PR and it looks like it might be related to something here:
https://github.com/looker-open-source/look-at-me-sideways/pull/143/files#diff-252e9ae9caf9f8cba76b8c29fcb25c84338a43588134da9cdc6d6766b2d2d7b2R2
Any suggestions?

Yes, I'll be releasing a patch later today that will prioritize compatibility with older Node versions. In the meantime, you can also use Node v17+

@tkovich Should be all done now. Patch release v3.1.1 restores compatibility with Node v14+ . Sorry for the disruption and thanks for the bug report.

Thank you thank you, that was so fast!


Update deps

New PR for #111

I also updated the Scala version used by the CI to correspond with the Scala version used in sbt 🙂


chore(main): release 0.0.5

:robot: I have created a release beep boop
0.0.5 (2024-09-08)
Bug Fixes

Failing SPC build (30e62d1)

This PR was generated with Release Please. See documentation.

:robot: Created releases:

v0.0.5
:sunflower:


Memory leakage during Building wheels for collected packages for flash-attn==2.0.1

Hi authors,
On a machine with about 39 GB CPU memory, Building wheels for collected packages of flash-attn 2.0.1 rapidly takes up all the memory and causes the machine to crash. (The CUDA version is 11.0, but I just need to install flash-attn to enable related code highlights) It there any workaround?

As mentioned in the README, you can set MAX_JOBS.

Thanks. Solved.


YARN-11446. [Federation] Add updateSchedulerConfiguration, getSchedulerConfiguration REST APIs for Router.

JIRA: YARN-11446. [Federation] Add updateSchedulerConfiguration, getSchedulerConfiguration REST APIs for Router.

:broken_heart: -1 overall

Vote
Subsystem
Runtime
Logfile
Comment

+0 :ok:
reexec
0m 50s

Docker mode activated.

_ Prechecks _

+1 :green_heart:
dupname
0m  0s

No case conflicting files found.

+0 :ok:
codespell
0m  1s

codespell was not available.

+0 :ok:
detsecrets
0m  1s

detect-secrets was not available.

+1 :green_heart:
@author
0m  0s

The patch does not contain any @author tags.

-1 :x:
test4tests
0m  0s

The patch doesn't appear to include any new or modified tests. Please justify why no new tests are needed for this patch. Also please list what manual steps were performed to verify this patch.

_ trunk Compile Tests _

+0 :ok:
mvndep
3m 24s

Maven dependency ordering for branch

+1 :green_heart:
mvninstall
33m 29s

trunk passed

+1 :green_heart:
compile
10m 29s

trunk passed with JDK Ubuntu-11.0.18+10-post-Ubuntu-0ubuntu120.04.1

+1 :green_heart:
compile
8m 51s

trunk passed with JDK Private Build-1.8.0_362-8u362-ga-0ubuntu1~20.04.1-b09

+1 :green_heart:
checkstyle
1m 45s

trunk passed

+1 :green_heart:
mvnsite
1m 33s

trunk passed

+1 :green_heart:
javadoc
1m 33s

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checkstyle
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/results-checkstyle-hadoop-yarn-project_hadoop-yarn.txt
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-1 :x:
spotbugs
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/new-spotbugs-hadoop-yarn-project_hadoop-yarn_hadoop-yarn-server_hadoop-yarn-server-router.html
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unit
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+1 :green_heart:
unit
0m 34s

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The patch does not generate ASF License warnings.

152m  5s

Reason
Tests

SpotBugs
module:hadoop-yarn-project/hadoop-yarn/hadoop-yarn-server/hadoop-yarn-server-router

Dead store to $L2 in org.apache.hadoop.yarn.server.router.webapp.FederationInterceptorREST.getSchedulerConfiguration(HttpServletRequest)  At FederationInterceptorREST.java:org.apache.hadoop.yarn.server.router.webapp.FederationInterceptorREST.getSchedulerConfiguration(HttpServletRequest)  At FederationInterceptorREST.java:[line 2948]

String is incompatible with expected argument type org.apache.hadoop.yarn.server.federation.store.records.SubClusterId in org.apache.hadoop.yarn.server.router.webapp.FederationInterceptorREST.getActiveSubcluster(String)  At FederationInterceptorREST.java:argument type org.apache.hadoop.yarn.server.federation.store.records.SubClusterId in org.apache.hadoop.yarn.server.router.webapp.FederationInterceptorREST.getActiveSubcluster(String)  At FederationInterceptorREST.java:[line 865]

Subsystem
Report/Notes

Docker
ClientAPI=1.42 ServerAPI=1.42 base: https://ci-hadoop.apache.org/job/hadoop-multibranch/job/PR-5476/1/artifact/out/Dockerfile

GITHUB PR
https://github.com/apache/hadoop/pull/5476

Optional Tests
dupname asflicense compile javac javadoc mvninstall mvnsite unit shadedclient spotbugs checkstyle codespell detsecrets

uname
Linux a7b7ca6cb574 4.15.0-206-generic #217-Ubuntu SMP Fri Feb 3 19:10:13 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux

Build tool
maven

Personality
dev-support/bin/hadoop.sh

git revision
trunk / e6fef60e89a2f05ce378ddc1f65990321d7b0a99

Default Java
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Multi-JDK versions
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Test Results
https://ci-hadoop.apache.org/job/hadoop-multibranch/job/PR-5476/1/testReport/

Max. process+thread count
623 (vs. ulimit of 5500)

modules
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Console output
https://ci-hadoop.apache.org/job/hadoop-multibranch/job/PR-5476/1/console

versions
git=2.25.1 maven=3.6.3 spotbugs=4.2.2

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Docker mode activated.

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shadedclient
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branch has no errors when building and testing our client artifacts.

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/results-checkstyle-hadoop-yarn-project_hadoop-yarn.txt
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+1 :green_heart:
shadedclient
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patch has no errors when building and testing our client artifacts.

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+1 :green_heart:
unit
5m 23s

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+1 :green_heart:
unit
0m 35s

hadoop-yarn-server-router in the patch passed.

+1 :green_heart:
asflicense
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The patch does not generate ASF License warnings.

178m 36s

Reason
Tests

SpotBugs
module:hadoop-yarn-project/hadoop-yarn/hadoop-yarn-server/hadoop-yarn-server-router

String is incompatible with expected argument type org.apache.hadoop.yarn.server.federation.store.records.SubClusterId in org.apache.hadoop.yarn.server.router.webapp.FederationInterceptorREST.getActiveSubcluster(String)  At FederationInterceptorREST.java:argument type org.apache.hadoop.yarn.server.federation.store.records.SubClusterId in org.apache.hadoop.yarn.server.router.webapp.FederationInterceptorREST.getActiveSubcluster(String)  At FederationInterceptorREST.java:[line 863]

Subsystem
Report/Notes

Docker
ClientAPI=1.42 ServerAPI=1.42 base: https://ci-hadoop.apache.org/job/hadoop-multibranch/job/PR-5476/2/artifact/out/Dockerfile

GITHUB PR
https://github.com/apache/hadoop/pull/5476

Optional Tests
dupname asflicense compile javac javadoc mvninstall mvnsite unit shadedclient spotbugs checkstyle codespell detsecrets

uname
Linux 61ed929f3acc 4.15.0-206-generic #217-Ubuntu SMP Fri Feb 3 19:10:13 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux

Build tool
maven

Personality
dev-support/bin/hadoop.sh

git revision
trunk / 3f6fb09c9b76c671acd084113c9ce8ba2e22f420

Default Java
Private Build-1.8.0_362-8u362-ga-0ubuntu1~20.04.1-b09

Multi-JDK versions
/usr/lib/jvm/java-11-openjdk-amd64:Ubuntu-11.0.18+10-post-Ubuntu-0ubuntu120.04.1 /usr/lib/jvm/java-8-openjdk-amd64:Private Build-1.8.0_362-8u362-ga-0ubuntu1~20.04.1-b09

Test Results
https://ci-hadoop.apache.org/job/hadoop-multibranch/job/PR-5476/2/testReport/

Max. process+thread count
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modules
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Console output
https://ci-hadoop.apache.org/job/hadoop-multibranch/job/PR-5476/2/console

versions
git=2.25.1 maven=3.6.3 spotbugs=4.2.2

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+1 :green_heart:
spotbugs
3m  0s

the patch passed

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shadedclient
23m 52s

patch has no errors when building and testing our client artifacts.

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+1 :green_heart:
unit
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+1 :green_heart:
unit
0m 35s

hadoop-yarn-server-router in the patch passed.

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asflicense
0m 48s

The patch does not generate ASF License warnings.

148m 55s

Subsystem
Report/Notes

Docker
ClientAPI=1.42 ServerAPI=1.42 base: https://ci-hadoop.apache.org/job/hadoop-multibranch/job/PR-5476/3/artifact/out/Dockerfile

GITHUB PR
https://github.com/apache/hadoop/pull/5476

Optional Tests
dupname asflicense compile javac javadoc mvninstall mvnsite unit shadedclient spotbugs checkstyle codespell detsecrets

uname
Linux 1de776c1624c 4.15.0-206-generic #217-Ubuntu SMP Fri Feb 3 19:10:13 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux

Build tool
maven

Personality
dev-support/bin/hadoop.sh

git revision
trunk / 8e5a324e97d253a65477ee5d3bcd02026397364d

Default Java
Private Build-1.8.0_362-8u362-ga-0ubuntu1~20.04.1-b09

Multi-JDK versions
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Test Results
https://ci-hadoop.apache.org/job/hadoop-multibranch/job/PR-5476/3/testReport/

Max. process+thread count
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modules
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Console output
https://ci-hadoop.apache.org/job/hadoop-multibranch/job/PR-5476/3/console

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Docker mode activated.

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+1 :green_heart:
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3m  6s

the patch passed

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shadedclient
20m 51s

patch has no errors when building and testing our client artifacts.

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unit
5m 43s

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+1 :green_heart:
unit
0m 43s

hadoop-yarn-server-router in the patch passed.

+1 :green_heart:
asflicense
0m 56s

The patch does not generate ASF License warnings.

166m 39s

Subsystem
Report/Notes

Docker
ClientAPI=1.42 ServerAPI=1.42 base: https://ci-hadoop.apache.org/job/hadoop-multibranch/job/PR-5476/4/artifact/out/Dockerfile

GITHUB PR
https://github.com/apache/hadoop/pull/5476

Optional Tests
dupname asflicense compile javac javadoc mvninstall mvnsite unit shadedclient spotbugs checkstyle codespell detsecrets

uname
Linux c40d05c6db1b 4.15.0-206-generic #217-Ubuntu SMP Fri Feb 3 19:10:13 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux

Build tool
maven

Personality
dev-support/bin/hadoop.sh

git revision
trunk / 9d7224f9dbf5a4ec2fdea8ac633d5df77e60a9ae

Default Java
Private Build-1.8.0_362-8u362-ga-0ubuntu1~20.04.1-b09

Multi-JDK versions
/usr/lib/jvm/java-11-openjdk-amd64:Ubuntu-11.0.18+10-post-Ubuntu-0ubuntu120.04.1 /usr/lib/jvm/java-8-openjdk-amd64:Private Build-1.8.0_362-8u362-ga-0ubuntu1~20.04.1-b09

Test Results
https://ci-hadoop.apache.org/job/hadoop-multibranch/job/PR-5476/4/testReport/

Max. process+thread count
558 (vs. ulimit of 5500)

modules
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Console output
https://ci-hadoop.apache.org/job/hadoop-multibranch/job/PR-5476/4/console

versions
git=2.25.1 maven=3.6.3 spotbugs=4.2.2

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shadedclient
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branch has no errors when building and testing our client artifacts.

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mvndep
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Maven dependency ordering for patch

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mvninstall
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compile
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the patch passed with JDK Ubuntu-11.0.18+10-post-Ubuntu-0ubuntu120.04.1

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javac
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/results-checkstyle-hadoop-yarn-project_hadoop-yarn.txt
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javadoc
1m 30s

the patch passed with JDK Private Build-1.8.0_362-8u362-ga-0ubuntu1~20.04.1-b09

+1 :green_heart:
spotbugs
3m  4s

the patch passed

+1 :green_heart:
shadedclient
21m 11s

patch has no errors when building and testing our client artifacts.

_ Other Tests _

+1 :green_heart:
unit
5m 43s

hadoop-yarn-common in the patch passed.

+1 :green_heart:
unit
0m 43s

hadoop-yarn-server-router in the patch passed.

+1 :green_heart:
asflicense
0m 56s

The patch does not generate ASF License warnings.

153m  4s

Subsystem
Report/Notes

Docker
ClientAPI=1.42 ServerAPI=1.42 base: https://ci-hadoop.apache.org/job/hadoop-multibranch/job/PR-5476/6/artifact/out/Dockerfile

GITHUB PR
https://github.com/apache/hadoop/pull/5476

Optional Tests
dupname asflicense compile javac javadoc mvninstall mvnsite unit shadedclient spotbugs checkstyle codespell detsecrets

uname
Linux 513db09992c1 4.15.0-206-generic #217-Ubuntu SMP Fri Feb 3 19:10:13 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux

Build tool
maven

Personality
dev-support/bin/hadoop.sh

git revision
trunk / f5b4cb07c6e7519681583a9693df32f85e8a4150

Default Java
Private Build-1.8.0_362-8u362-ga-0ubuntu1~20.04.1-b09

Multi-JDK versions
/usr/lib/jvm/java-11-openjdk-amd64:Ubuntu-11.0.18+10-post-Ubuntu-0ubuntu120.04.1 /usr/lib/jvm/java-8-openjdk-amd64:Private Build-1.8.0_362-8u362-ga-0ubuntu1~20.04.1-b09

Test Results
https://ci-hadoop.apache.org/job/hadoop-multibranch/job/PR-5476/6/testReport/

Max. process+thread count
556 (vs. ulimit of 5500)

modules
C: hadoop-yarn-project/hadoop-yarn/hadoop-yarn-common hadoop-yarn-project/hadoop-yarn/hadoop-yarn-server/hadoop-yarn-server-router U: hadoop-yarn-project/hadoop-yarn

Console output
https://ci-hadoop.apache.org/job/hadoop-multibranch/job/PR-5476/6/console

versions
git=2.25.1 maven=3.6.3 spotbugs=4.2.2

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+0 :ok:
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0m 46s

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+0 :ok:
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0m  1s

codespell was not available.

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detsecrets
0m  1s

detect-secrets was not available.

+1 :green_heart:
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0m  0s

The patch does not contain any @author tags.

+1 :green_heart:
test4tests
0m  0s

The patch appears to include 3 new or modified test files.

_ trunk Compile Tests _

+0 :ok:
mvndep
20m 44s

Maven dependency ordering for branch

+1 :green_heart:
mvninstall
25m 49s

trunk passed

+1 :green_heart:
compile
9m 38s

trunk passed with JDK Ubuntu-11.0.18+10-post-Ubuntu-0ubuntu120.04.1

+1 :green_heart:
compile
8m 32s

trunk passed with JDK Private Build-1.8.0_362-8u362-ga-0ubuntu1~20.04.1-b09

+1 :green_heart:
checkstyle
1m 46s

trunk passed

+1 :green_heart:
mvnsite
1m 50s

trunk passed

+1 :green_heart:
javadoc
1m 48s

trunk passed with JDK Ubuntu-11.0.18+10-post-Ubuntu-0ubuntu120.04.1

+1 :green_heart:
javadoc
1m 39s

trunk passed with JDK Private Build-1.8.0_362-8u362-ga-0ubuntu1~20.04.1-b09

+1 :green_heart:
spotbugs
3m  8s

trunk passed

+1 :green_heart:
shadedclient
20m 45s

branch has no errors when building and testing our client artifacts.

-0 :warning:
patch
21m  7s

Used diff version of patch file. Binary files and potentially other changes not applied. Please rebase and squash commits if necessary.

_ Patch Compile Tests _

+0 :ok:
mvndep
0m 28s

Maven dependency ordering for patch

+1 :green_heart:
mvninstall
1m  4s

the patch passed

+1 :green_heart:
compile
9m  2s

the patch passed with JDK Ubuntu-11.0.18+10-post-Ubuntu-0ubuntu120.04.1

+1 :green_heart:
javac
9m  2s

the patch passed

+1 :green_heart:
compile
8m 26s

the patch passed with JDK Private Build-1.8.0_362-8u362-ga-0ubuntu1~20.04.1-b09

+1 :green_heart:
javac
8m 26s

the patch passed

-1 :x:
blanks
0m  0s
/blanks-eol.txt
The patch has 13 line(s) that end in blanks. Use git apply --whitespace=fix <<patch_file>>. Refer https://git-scm.com/docs/git-apply

-0 :warning:
checkstyle
1m 38s
/results-checkstyle-hadoop-yarn-project_hadoop-yarn.txt
hadoop-yarn-project/hadoop-yarn: The patch generated 2 new + 0 unchanged - 0 fixed = 2 total (was 0)

+1 :green_heart:
mvnsite
1m 37s

the patch passed

+1 :green_heart:
javadoc
1m 32s

the patch passed with JDK Ubuntu-11.0.18+10-post-Ubuntu-0ubuntu120.04.1

+1 :green_heart:
javadoc
1m 28s

the patch passed with JDK Private Build-1.8.0_362-8u362-ga-0ubuntu1~20.04.1-b09

+1 :green_heart:
spotbugs
3m  8s

the patch passed

+1 :green_heart:
shadedclient
20m 52s

patch has no errors when building and testing our client artifacts.

_ Other Tests _

+1 :green_heart:
unit
5m 41s

hadoop-yarn-common in the patch passed.

+1 :green_heart:
unit
0m 44s

hadoop-yarn-server-router in the patch passed.

+1 :green_heart:
asflicense
0m 56s

The patch does not generate ASF License warnings.

156m 46s

Subsystem
Report/Notes

Docker
ClientAPI=1.42 ServerAPI=1.42 base: https://ci-hadoop.apache.org/job/hadoop-multibranch/job/PR-5476/7/artifact/out/Dockerfile

GITHUB PR
https://github.com/apache/hadoop/pull/5476

Optional Tests
dupname asflicense compile javac javadoc mvninstall mvnsite unit shadedclient spotbugs checkstyle codespell detsecrets

uname
Linux 1a99d9ddbbbd 4.15.0-206-generic #217-Ubuntu SMP Fri Feb 3 19:10:13 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux

Build tool
maven

Personality
dev-support/bin/hadoop.sh

git revision
trunk / 34c675a2246d9933d7e2e0cc02242a1f0fdf01c6

Default Java
Private Build-1.8.0_362-8u362-ga-0ubuntu1~20.04.1-b09

Multi-JDK versions
/usr/lib/jvm/java-11-openjdk-amd64:Ubuntu-11.0.18+10-post-Ubuntu-0ubuntu120.04.1 /usr/lib/jvm/java-8-openjdk-amd64:Private Build-1.8.0_362-8u362-ga-0ubuntu1~20.04.1-b09

Test Results
https://ci-hadoop.apache.org/job/hadoop-multibranch/job/PR-5476/7/testReport/

Max. process+thread count
557 (vs. ulimit of 5500)

modules
C: hadoop-yarn-project/hadoop-yarn/hadoop-yarn-common hadoop-yarn-project/hadoop-yarn/hadoop-yarn-server/hadoop-yarn-server-router U: hadoop-yarn-project/hadoop-yarn

Console output
https://ci-hadoop.apache.org/job/hadoop-multibranch/job/PR-5476/7/console

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+0 :ok:
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+0 :ok:
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+0 :ok:
detsecrets
0m  1s

detect-secrets was not available.

+1 :green_heart:
@author
0m  0s

The patch does not contain any @author tags.

+1 :green_heart:
test4tests
0m  0s

The patch appears to include 3 new or modified test files.

_ trunk Compile Tests _

+0 :ok:
mvndep
16m  6s

Maven dependency ordering for branch

+1 :green_heart:
mvninstall
28m 34s

trunk passed

+1 :green_heart:
compile
10m 24s

trunk passed with JDK Ubuntu-11.0.18+10-post-Ubuntu-0ubuntu120.04.1

+1 :green_heart:
compile
8m 50s

trunk passed with JDK Private Build-1.8.0_362-8u362-ga-0ubuntu1~20.04.1-b09

+1 :green_heart:
checkstyle
1m 45s

trunk passed

+1 :green_heart:
mvnsite
1m 34s

trunk passed

+1 :green_heart:
javadoc
1m 34s

trunk passed with JDK Ubuntu-11.0.18+10-post-Ubuntu-0ubuntu120.04.1

+1 :green_heart:
javadoc
1m 23s

trunk passed with JDK Private Build-1.8.0_362-8u362-ga-0ubuntu1~20.04.1-b09

+1 :green_heart:
spotbugs
3m  0s

trunk passed

+1 :green_heart:
shadedclient
23m 38s

branch has no errors when building and testing our client artifacts.

-0 :warning:
patch
23m 57s

Used diff version of patch file. Binary files and potentially other changes not applied. Please rebase and squash commits if necessary.

_ Patch Compile Tests _

+0 :ok:
mvndep
0m 23s

Maven dependency ordering for patch

+1 :green_heart:
mvninstall
1m  1s

the patch passed

+1 :green_heart:
compile
9m 51s

the patch passed with JDK Ubuntu-11.0.18+10-post-Ubuntu-0ubuntu120.04.1

+1 :green_heart:
javac
9m 51s

the patch passed

+1 :green_heart:
compile
8m 45s

the patch passed with JDK Private Build-1.8.0_362-8u362-ga-0ubuntu1~20.04.1-b09

+1 :green_heart:
javac
8m 45s

the patch passed

+1 :green_heart:
blanks
0m  0s

The patch has no blanks issues.

-0 :warning:
checkstyle
1m 38s
/results-checkstyle-hadoop-yarn-project_hadoop-yarn.txt
hadoop-yarn-project/hadoop-yarn: The patch generated 2 new + 0 unchanged - 0 fixed = 2 total (was 0)

+1 :green_heart:
mvnsite
1m 26s

the patch passed

+1 :green_heart:
javadoc
1m 20s

the patch passed with JDK Ubuntu-11.0.18+10-post-Ubuntu-0ubuntu120.04.1

+1 :green_heart:
javadoc
1m 18s

the patch passed with JDK Private Build-1.8.0_362-8u362-ga-0ubuntu1~20.04.1-b09

+1 :green_heart:
spotbugs
3m  2s

the patch passed

+1 :green_heart:
shadedclient
23m 46s

patch has no errors when building and testing our client artifacts.

_ Other Tests _

+1 :green_heart:
unit
5m 23s

hadoop-yarn-common in the patch passed.

+1 :green_heart:
unit
0m 35s

hadoop-yarn-server-router in the patch passed.

+1 :green_heart:
asflicense
0m 47s

The patch does not generate ASF License warnings.

160m  4s

Subsystem
Report/Notes

Docker
ClientAPI=1.42 ServerAPI=1.42 base: https://ci-hadoop.apache.org/job/hadoop-multibranch/job/PR-5476/8/artifact/out/Dockerfile

GITHUB PR
https://github.com/apache/hadoop/pull/5476

Optional Tests
dupname asflicense compile javac javadoc mvninstall mvnsite unit shadedclient spotbugs checkstyle codespell detsecrets

uname
Linux 9351d11d3b58 4.15.0-206-generic #217-Ubuntu SMP Fri Feb 3 19:10:13 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux

Build tool
maven

Personality
dev-support/bin/hadoop.sh

git revision
trunk / 8dc008edaf3f1f1d6d1538f9f7d762cffb06937e

Default Java
Private Build-1.8.0_362-8u362-ga-0ubuntu1~20.04.1-b09

Multi-JDK versions
/usr/lib/jvm/java-11-openjdk-amd64:Ubuntu-11.0.18+10-post-Ubuntu-0ubuntu120.04.1 /usr/lib/jvm/java-8-openjdk-amd64:Private Build-1.8.0_362-8u362-ga-0ubuntu1~20.04.1-b09

Test Results
https://ci-hadoop.apache.org/job/hadoop-multibranch/job/PR-5476/8/testReport/

Max. process+thread count
588 (vs. ulimit of 5500)

modules
C: hadoop-yarn-project/hadoop-yarn/hadoop-yarn-common hadoop-yarn-project/hadoop-yarn/hadoop-yarn-server/hadoop-yarn-server-router U: hadoop-yarn-project/hadoop-yarn

Console output
https://ci-hadoop.apache.org/job/hadoop-multibranch/job/PR-5476/8/console

versions
git=2.25.1 maven=3.6.3 spotbugs=4.2.2

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+0 :ok:
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No case conflicting files found.

+0 :ok:
codespell
0m  1s

codespell was not available.

+0 :ok:
detsecrets
0m  1s

detect-secrets was not available.

+1 :green_heart:
@author
0m  0s

The patch does not contain any @author tags.

+1 :green_heart:
test4tests
0m  0s

The patch appears to include 3 new or modified test files.

_ trunk Compile Tests _

+0 :ok:
mvndep
18m 15s

Maven dependency ordering for branch

+1 :green_heart:
mvninstall
29m  1s

trunk passed

+1 :green_heart:
compile
10m 28s

trunk passed with JDK Ubuntu-11.0.18+10-post-Ubuntu-0ubuntu120.04.1

+1 :green_heart:
compile
8m 51s

trunk passed with JDK Private Build-1.8.0_362-8u362-ga-0ubuntu1~20.04.1-b09

+1 :green_heart:
checkstyle
1m 48s

trunk passed

+1 :green_heart:
mvnsite
1m 35s

trunk passed

+1 :green_heart:
javadoc
1m 35s

trunk passed with JDK Ubuntu-11.0.18+10-post-Ubuntu-0ubuntu120.04.1

+1 :green_heart:
javadoc
1m 24s

trunk passed with JDK Private Build-1.8.0_362-8u362-ga-0ubuntu1~20.04.1-b09

+1 :green_heart:
spotbugs
3m  2s

trunk passed

+1 :green_heart:
shadedclient
23m 29s

branch has no errors when building and testing our client artifacts.

-0 :warning:
patch
23m 49s

Used diff version of patch file. Binary files and potentially other changes not applied. Please rebase and squash commits if necessary.

_ Patch Compile Tests _

+0 :ok:
mvndep
0m 24s

Maven dependency ordering for patch

+1 :green_heart:
mvninstall
1m  2s

the patch passed

+1 :green_heart:
compile
9m 48s

the patch passed with JDK Ubuntu-11.0.18+10-post-Ubuntu-0ubuntu120.04.1

+1 :green_heart:
javac
9m 48s

the patch passed

+1 :green_heart:
compile
8m 48s

the patch passed with JDK Private Build-1.8.0_362-8u362-ga-0ubuntu1~20.04.1-b09

+1 :green_heart:
javac
8m 48s

the patch passed

+1 :green_heart:
blanks
0m  0s

The patch has no blanks issues.

+1 :green_heart:
checkstyle
1m 39s

the patch passed

+1 :green_heart:
mvnsite
1m 25s

the patch passed

+1 :green_heart:
javadoc
1m 20s

the patch passed with JDK Ubuntu-11.0.18+10-post-Ubuntu-0ubuntu120.04.1

+1 :green_heart:
javadoc
1m 18s

the patch passed with JDK Private Build-1.8.0_362-8u362-ga-0ubuntu1~20.04.1-b09

+1 :green_heart:
spotbugs
3m  2s

the patch passed

+1 :green_heart:
shadedclient
24m  0s

patch has no errors when building and testing our client artifacts.

_ Other Tests _

+1 :green_heart:
unit
5m 23s

hadoop-yarn-common in the patch passed.

+1 :green_heart:
unit
0m 35s

hadoop-yarn-server-router in the patch passed.

+1 :green_heart:
asflicense
0m 48s

The patch does not generate ASF License warnings.

162m 46s

Subsystem
Report/Notes

Docker
ClientAPI=1.42 ServerAPI=1.42 base: https://ci-hadoop.apache.org/job/hadoop-multibranch/job/PR-5476/9/artifact/out/Dockerfile

GITHUB PR
https://github.com/apache/hadoop/pull/5476

Optional Tests
dupname asflicense compile javac javadoc mvninstall mvnsite unit shadedclient spotbugs checkstyle codespell detsecrets

uname
Linux aeaa2c0c03d1 4.15.0-206-generic #217-Ubuntu SMP Fri Feb 3 19:10:13 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux

Build tool
maven

Personality
dev-support/bin/hadoop.sh

git revision
trunk / 9a07c8ae97abe685acb3ed920a413ff533314a74

Default Java
Private Build-1.8.0_362-8u362-ga-0ubuntu1~20.04.1-b09

Multi-JDK versions
/usr/lib/jvm/java-11-openjdk-amd64:Ubuntu-11.0.18+10-post-Ubuntu-0ubuntu120.04.1 /usr/lib/jvm/java-8-openjdk-amd64:Private Build-1.8.0_362-8u362-ga-0ubuntu1~20.04.1-b09

Test Results
https://ci-hadoop.apache.org/job/hadoop-multibranch/job/PR-5476/9/testReport/

Max. process+thread count
531 (vs. ulimit of 5500)

modules
C: hadoop-yarn-project/hadoop-yarn/hadoop-yarn-common hadoop-yarn-project/hadoop-yarn/hadoop-yarn-server/hadoop-yarn-server-router U: hadoop-yarn-project/hadoop-yarn

Console output
https://ci-hadoop.apache.org/job/hadoop-multibranch/job/PR-5476/9/console

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+1 :green_heart:
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The patch does not contain any @author tags.

+1 :green_heart:
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0m  0s

The patch appears to include 3 new or modified test files.

_ trunk Compile Tests _

+0 :ok:
mvndep
16m 20s

Maven dependency ordering for branch

+1 :green_heart:
mvninstall
28m 40s

trunk passed

+1 :green_heart:
compile
10m 23s

trunk passed with JDK Ubuntu-11.0.18+10-post-Ubuntu-0ubuntu120.04.1

+1 :green_heart:
compile
8m 47s

trunk passed with JDK Private Build-1.8.0_362-8u362-ga-0ubuntu1~20.04.1-b09

+1 :green_heart:
checkstyle
1m 45s

trunk passed

+1 :green_heart:
mvnsite
1m 33s

trunk passed

+1 :green_heart:
javadoc
1m 32s

trunk passed with JDK Ubuntu-11.0.18+10-post-Ubuntu-0ubuntu120.04.1

+1 :green_heart:
javadoc
1m 23s

trunk passed with JDK Private Build-1.8.0_362-8u362-ga-0ubuntu1~20.04.1-b09

+1 :green_heart:
spotbugs
2m 58s

trunk passed

+1 :green_heart:
shadedclient
23m 24s

branch has no errors when building and testing our client artifacts.

-0 :warning:
patch
23m 43s

Used diff version of patch file. Binary files and potentially other changes not applied. Please rebase and squash commits if necessary.

_ Patch Compile Tests _

+0 :ok:
mvndep
0m 22s

Maven dependency ordering for patch

+1 :green_heart:
mvninstall
1m  2s

the patch passed

+1 :green_heart:
compile
9m 47s

the patch passed with JDK Ubuntu-11.0.18+10-post-Ubuntu-0ubuntu120.04.1

+1 :green_heart:
javac
9m 47s

the patch passed

+1 :green_heart:
compile
8m 48s

the patch passed with JDK Private Build-1.8.0_362-8u362-ga-0ubuntu1~20.04.1-b09

+1 :green_heart:
javac
8m 48s

the patch passed

+1 :green_heart:
blanks
0m  0s

The patch has no blanks issues.

+1 :green_heart:
checkstyle
1m 35s

the patch passed

+1 :green_heart:
mvnsite
1m 25s

the patch passed

+1 :green_heart:
javadoc
1m 21s

the patch passed with JDK Ubuntu-11.0.18+10-post-Ubuntu-0ubuntu120.04.1

+1 :green_heart:
javadoc
1m 17s

the patch passed with JDK Private Build-1.8.0_362-8u362-ga-0ubuntu1~20.04.1-b09

+1 :green_heart:
spotbugs
3m  3s

the patch passed

+1 :green_heart:
shadedclient
23m 45s

patch has no errors when building and testing our client artifacts.

_ Other Tests _

+1 :green_heart:
unit
5m 25s

hadoop-yarn-common in the patch passed.

+1 :green_heart:
unit
0m 34s

hadoop-yarn-server-router in the patch passed.

+1 :green_heart:
asflicense
0m 48s

The patch does not generate ASF License warnings.

160m  8s

Subsystem
Report/Notes

Docker
ClientAPI=1.42 ServerAPI=1.42 base: https://ci-hadoop.apache.org/job/hadoop-multibranch/job/PR-5476/10/artifact/out/Dockerfile

GITHUB PR
https://github.com/apache/hadoop/pull/5476

Optional Tests
dupname asflicense compile javac javadoc mvninstall mvnsite unit shadedclient spotbugs checkstyle codespell detsecrets

uname
Linux ce9b38cb46ee 4.15.0-206-generic #217-Ubuntu SMP Fri Feb 3 19:10:13 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux

Build tool
maven

Personality
dev-support/bin/hadoop.sh

git revision
trunk / 16eb2534212c82edd847d75f64bd93e4d07acd51

Default Java
Private Build-1.8.0_362-8u362-ga-0ubuntu1~20.04.1-b09

Multi-JDK versions
/usr/lib/jvm/java-11-openjdk-amd64:Ubuntu-11.0.18+10-post-Ubuntu-0ubuntu120.04.1 /usr/lib/jvm/java-8-openjdk-amd64:Private Build-1.8.0_362-8u362-ga-0ubuntu1~20.04.1-b09

Test Results
https://ci-hadoop.apache.org/job/hadoop-multibranch/job/PR-5476/10/testReport/

Max. process+thread count
577 (vs. ulimit of 5500)

modules
C: hadoop-yarn-project/hadoop-yarn/hadoop-yarn-common hadoop-yarn-project/hadoop-yarn/hadoop-yarn-server/hadoop-yarn-server-router U: hadoop-yarn-project/hadoop-yarn

Console output
https://ci-hadoop.apache.org/job/hadoop-multibranch/job/PR-5476/10/console

versions
git=2.25.1 maven=3.6.3 spotbugs=4.2.2

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detsecrets
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_ trunk Compile Tests _

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_ Patch Compile Tests _

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Subsystem
Report/Notes

Docker
ClientAPI=1.42 ServerAPI=1.42 base: https://ci-hadoop.apache.org/job/hadoop-multibranch/job/PR-5476/11/artifact/out/Dockerfile

GITHUB PR
https://github.com/apache/hadoop/pull/5476

Optional Tests
dupname asflicense compile javac javadoc mvninstall mvnsite unit shadedclient spotbugs checkstyle codespell detsecrets

uname
Linux 7c43e9c25d87 4.15.0-206-generic #217-Ubuntu SMP Fri Feb 3 19:10:13 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux

Build tool
maven

Personality
dev-support/bin/hadoop.sh

git revision
trunk / 1940a476cd41165cddd9e7ff42c82f63c334ee58

Default Java
Private Build-1.8.0_362-8u362-ga-0ubuntu1~20.04.1-b09

Multi-JDK versions
/usr/lib/jvm/java-11-openjdk-amd64:Ubuntu-11.0.18+10-post-Ubuntu-0ubuntu120.04.1 /usr/lib/jvm/java-8-openjdk-amd64:Private Build-1.8.0_362-8u362-ga-0ubuntu1~20.04.1-b09

Test Results
https://ci-hadoop.apache.org/job/hadoop-multibranch/job/PR-5476/11/testReport/

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modules
C: hadoop-yarn-project/hadoop-yarn/hadoop-yarn-common hadoop-yarn-project/hadoop-yarn/hadoop-yarn-server/hadoop-yarn-server-router U: hadoop-yarn-project/hadoop-yarn

Console output
https://ci-hadoop.apache.org/job/hadoop-multibranch/job/PR-5476/11/console

versions
git=2.25.1 maven=3.6.3 spotbugs=4.2.2

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@goiri Can you help review this PR again? Thank you very much!

@goiri Thank you very much for helping to review the code!


Local rollback for map

Implement local rollback on SharedMap to roll back edits on map. LocalOpMetadata has enough information to undo each op. See epic #8545 and infra implementation #9345.
Note: undo stack will still have edits and rollbacks on the stack, which is weird.

There's a bug here not caused by my changes: when there are pending edits and a remote clear happens, no events are generated. Opened AB#411.


SqlSetup: Added ASServerMode parameter

Pull Request (PR) description

Changes to SqlSetup

Added parameter ASServerMode to support installing Analysis Services in
Multidimensional mode, Tabular mode and PowerPivot mode.
Added integration tests for testing Analysis Services Multidimensional mode
and Tabular mode.

Note: This continues the work by @craigofnz in PR #391.
This Pull Request (PR) fixes the following issues:
Fixes #388
Task list:

[x] Change details added to Unreleased section of CHANGELOG.md?
[x] Added/updated documentation, comment-based help and descriptions in .schema.mof files where appropriate?
[x] Examples appropriately updated?
[x] New/changed code adheres to Style Guidelines?
[x] Unit and (optional) Integration tests created/updated where possible?

This change is

Codecov Report

Merging #964 into dev will increase coverage by <1%.
The diff coverage is n/a.

@@         Coverage Diff          @@
##            dev   #964    +/-   ##
====================================
+ Coverage    96%    96%   +<1%
====================================
  Files        32     32
  Lines      3533   3850   +317
====================================
+ Hits       3413   3724   +311
- Misses      120    126     +6

Reviewed 6 of 6 files at r2.
Review status: all files reviewed at latest revision, 2 unresolved discussions.

CHANGELOG.md, line 17 at r2 (raw file):

- Changes to SqlSetup
  - Added parameter `ASServerMode` to support installing Analysis Services in
    Multidimensional mode, Tabular mode and PowerPivot mode.

Add reference to the issue here.

README.md, line 1378 at r2 (raw file):

Default it will install in Multidimensional mode

"The default is to install in Multidimensional mode". Throughout.

Comments from Reviewable

Review status: 1 of 8 files reviewed at latest revision, 2 unresolved discussions.

CHANGELOG.md, line 17 at r2 (raw file):
Previously, johlju (Johan Ljunggren) wrote…
Add reference to the issue here.

Done.

README.md, line 1378 at r2 (raw file):
Previously, johlju (Johan Ljunggren) wrote…

Default it will install in Multidimensional mode

"The default is to install in Multidimensional mode". Throughout.

Done.

Comments from Reviewable

Reviewed 7 of 7 files at r3.
Review status: all files reviewed at latest revision, all discussions resolved.

Comments from Reviewable


~ hotkey kills Ё

Yeah, hotkeys configuration is a planned feature, but is there something that can be done to remedy this (w/o building the whole thing from the source)?

Hi! I will take the task (hotkeys configuration) with highest priority, so this is a question of few days.