Add logical definitions based on Rhea reactions

Ontology comparison
Old

Ontology IRI: http://purl.obolibrary.org/obo/go.owl
Version IRI: http://purl.obolibrary.org/obo/go/releases/2021-04-05/go.owl
Loaded from: file:/Users/jim/Documents/Source/go-ontology/src/ontology/reasoned-master.owl

New

Ontology IRI: http://purl.obolibrary.org/obo/go.owl
Version IRI: http://purl.obolibrary.org/obo/go/releases/2021-04-05/go.owl
Loaded from: file:/Users/jim/Documents/Source/go-ontology/src/ontology/reasoned-rhea-defs.owl

Ontology imports
Added

go-catalytic-activities.owl

Ontology annotations
(4S)-4-hydroxy-2-oxoglutarate aldolase activity http://purl.obolibrary.org/obo/GO_0106009
Removed

(4S)-4-hydroxy-2-oxoglutarate aldolase activity SubClassOf oxo-acid-lyase activity

Added

(4S)-4-hydroxy-2-oxoglutarate aldolase activity SubClassOf 4-hydroxy-2-oxoglutarate aldolase activity

(E)-caffeate-CoA ligase activity http://purl.obolibrary.org/obo/GO_0106286
Removed

(E)-caffeate-CoA ligase activity SubClassOf CoA-ligase activity

Added

(E)-caffeate-CoA ligase activity SubClassOf butyrate-CoA ligase activity

(R)-carnitine:4-(trimethylammonio)butanoate antiporter activity http://purl.obolibrary.org/obo/GO_0044667
Removed

(R)-carnitine:4-(trimethylammonio)butanoate antiporter activity SubClassOf 4-(trimethylammonio)butanoate transmembrane transporter activity

(R)-carnitine:4-(trimethylammonio)butanoate antiporter activity SubClassOf (R)-carnitine transmembrane transporter activity

(R,R)-butanediol dehydrogenase activity http://purl.obolibrary.org/obo/GO_0000721
Removed

(R,R)-butanediol dehydrogenase activity SubClassOf oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Added

(R,R)-butanediol dehydrogenase activity SubClassOf alcohol dehydrogenase (NAD+) activity

(S)-carnitine 3-dehydrogenase activity http://purl.obolibrary.org/obo/GO_0047041
Removed

(S)-carnitine 3-dehydrogenase activity SubClassOf oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Added

(S)-carnitine 3-dehydrogenase activity SubClassOf carnitine 3-dehydrogenase activity

(S,S)-butanediol dehydrogenase activity http://purl.obolibrary.org/obo/GO_0047512
Removed

(S,S)-butanediol dehydrogenase activity SubClassOf oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Added

(S,S)-butanediol dehydrogenase activity SubClassOf alcohol dehydrogenase (NAD+) activity

(Z)-3-hexen-1-ol acetyltransferase activity http://purl.obolibrary.org/obo/GO_0102165
Removed

(Z)-3-hexen-1-ol acetyltransferase activity SubClassOf transferase activity, transferring acyl groups other than amino-acyl groups

Added

(Z)-3-hexen-1-ol acetyltransferase activity SubClassOf alcohol O-acetyltransferase activity

(deoxy)adenylate kinase activity http://purl.obolibrary.org/obo/GO_0047506
Removed

(deoxy)adenylate kinase activity SubClassOf phosphotransferase activity, phosphate group as acceptor

(deoxy)adenylate kinase activity SubClassOf kinase activity

Added

(deoxy)adenylate kinase activity SubClassOf (deoxy)nucleoside-phosphate kinase activity

1-alkylglycerophosphocholine O-acetyltransferase activity http://purl.obolibrary.org/obo/GO_0047192
Added

1-alkylglycerophosphocholine O-acetyltransferase activity SubClassOf 1-alkylglycerophosphocholine O-acyltransferase activity

11-cis-retinol dehydrogenase activity http://purl.obolibrary.org/obo/GO_0102354
Removed

11-cis-retinol dehydrogenase activity SubClassOf oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Added

11-cis-retinol dehydrogenase activity SubClassOf alcohol dehydrogenase (NADP+) activity

2-furoate-CoA ligase activity http://purl.obolibrary.org/obo/GO_0047541
Removed

2-furoate-CoA ligase activity SubClassOf CoA-ligase activity

2-furoate-CoA ligase activity SubClassOf acid-thiol ligase activity

Added

2-furoate-CoA ligase activity SubClassOf butyrate-CoA ligase activity

2-hydroxyacylsphingosine 1-beta-galactosyltransferase activity http://purl.obolibrary.org/obo/GO_0003851
Removed

2-hydroxyacylsphingosine 1-beta-galactosyltransferase activity SubClassOf UDP-galactosyltransferase activity

Added

2-hydroxyacylsphingosine 1-beta-galactosyltransferase activity SubClassOf N-acylsphingosine galactosyltransferase activity

2-oxo-delta3-4,5,5-trimethylcyclopentenylacetyl-CoA synthetase activity http://purl.obolibrary.org/obo/GO_0018855
Removed

2-oxo-delta3-4,5,5-trimethylcyclopentenylacetyl-CoA synthetase activity SubClassOf CoA-ligase activity

2-oxo-delta3-4,5,5-trimethylcyclopentenylacetyl-CoA synthetase activity SubClassOf acid-thiol ligase activity

Added

2-oxo-delta3-4,5,5-trimethylcyclopentenylacetyl-CoA synthetase activity SubClassOf butyrate-CoA ligase activity

3-alpha,7-alpha,12-alpha-trihydroxycholestan-26-al 26-oxidoreductase activity http://purl.obolibrary.org/obo/GO_0047103
Removed

3-alpha,7-alpha,12-alpha-trihydroxycholestan-26-al 26-oxidoreductase activity SubClassOf oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor

Added

3-alpha,7-alpha,12-alpha-trihydroxycholestan-26-al 26-oxidoreductase activity SubClassOf aldehyde dehydrogenase (NAD+) activity

3-alpha,7-alpha-dihydroxy-5-beta-cholestanate-CoA ligase activity http://purl.obolibrary.org/obo/GO_0047476
Removed

3-alpha,7-alpha-dihydroxy-5-beta-cholestanate-CoA ligase activity SubClassOf acid-thiol ligase activity

3-alpha,7-alpha-dihydroxy-5-beta-cholestanate-CoA ligase activity SubClassOf CoA-ligase activity

Added

3-alpha,7-alpha-dihydroxy-5-beta-cholestanate-CoA ligase activity SubClassOf butyrate-CoA ligase activity

3-alpha-hydroxy-5-beta-androstane-17-one 3-alpha-dehydrogenase activity http://purl.obolibrary.org/obo/GO_0047009
Removed

3-alpha-hydroxy-5-beta-androstane-17-one 3-alpha-dehydrogenase activity SubClassOf oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Added

3-alpha-hydroxy-5-beta-androstane-17-one 3-alpha-dehydrogenase activity SubClassOf alcohol dehydrogenase (NAD+) activity

3-beta-hydroxy-delta5-steroid dehydrogenase activity http://purl.obolibrary.org/obo/GO_0003854
Added

3-beta-hydroxy-delta5-steroid dehydrogenase activity SubClassOf alcohol dehydrogenase (NAD+) activity

3-hydroxypropionyl-CoA synthetase activity http://purl.obolibrary.org/obo/GO_0043955
Removed

3-hydroxypropionyl-CoA synthetase activity SubClassOf acid-thiol ligase activity

3-hydroxypropionyl-CoA synthetase activity SubClassOf CoA-ligase activity

Added

3-hydroxypropionyl-CoA synthetase activity SubClassOf butyrate-CoA ligase activity

3-keto sterol reductase activity http://purl.obolibrary.org/obo/GO_0000253
Removed

3-keto sterol reductase activity SubClassOf oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Added

3-keto sterol reductase activity SubClassOf carbonyl reductase (NADPH) activity

3beta-hydroxy-5beta-steroid dehydrogenase activity http://purl.obolibrary.org/obo/GO_0033703
Removed

3beta-hydroxy-5beta-steroid dehydrogenase activity SubClassOf oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Added

3beta-hydroxy-5beta-steroid dehydrogenase activity SubClassOf carbonyl reductase (NADPH) activity

4-chlorobenzoate-CoA ligase activity http://purl.obolibrary.org/obo/GO_0018861
Removed

4-chlorobenzoate-CoA ligase activity SubClassOf acid-thiol ligase activity

4-chlorobenzoate-CoA ligase activity SubClassOf CoA-ligase activity

Added

4-chlorobenzoate-CoA ligase activity SubClassOf butyrate-CoA ligase activity

4-coumarate-CoA ligase activity http://purl.obolibrary.org/obo/GO_0016207
Removed

4-coumarate-CoA ligase activity SubClassOf CoA-ligase activity

4-coumarate-CoA ligase activity SubClassOf acid-thiol ligase activity

Added

4-coumarate-CoA ligase activity SubClassOf butyrate-CoA ligase activity

4-hydroxybenzoate-CoA ligase activity http://purl.obolibrary.org/obo/GO_0018859
Removed

4-hydroxybenzoate-CoA ligase activity SubClassOf acid-thiol ligase activity

4-hydroxybenzoate-CoA ligase activity SubClassOf CoA-ligase activity

Added

4-hydroxybenzoate-CoA ligase activity SubClassOf butyrate-CoA ligase activity

4-hydroxyphenylpyruvate decarboxylase activity http://purl.obolibrary.org/obo/GO_0050546
Removed

4-hydroxyphenylpyruvate decarboxylase activity SubClassOf carboxy-lyase activity

Added

4-hydroxyphenylpyruvate decarboxylase activity SubClassOf pyruvate decarboxylase activity

5alpha-androstane-3beta,17beta-diol dehydrogenase activity http://purl.obolibrary.org/obo/GO_0047024
Added

5alpha-androstane-3beta,17beta-diol dehydrogenase activity SubClassOf carbonyl reductase (NADPH) activity

6-carboxyhexanoate-CoA ligase activity http://purl.obolibrary.org/obo/GO_0042410
Removed

6-carboxyhexanoate-CoA ligase activity SubClassOf acid-thiol ligase activity

Added

6-carboxyhexanoate-CoA ligase activity SubClassOf dicarboxylate-CoA ligase activity

6-sulfoquinovose(1-) catabolic process to 3-sulfopropanediol(1-) http://purl.obolibrary.org/obo/GO_0061721
Added

6-sulfoquinovose(1-) catabolic process to 3-sulfopropanediol(1-) SubClassOf NAD metabolic process

6-sulfoquinovose(1-) catabolic process to 3-sulfopropanediol(1-) SubClassOf ATP metabolic process

6-sulfoquinovose(1-) catabolic process to 3-sulfopropanediol(1-) SubClassOf NADP metabolic process

6-sulfoquinovose(1-) catabolic process to 3-sulfopropanediol(1-) SubClassOf NADH metabolic process

6-sulfoquinovose(1-) catabolic process to glycerone phosphate and 3-sulfolactaldehyde http://purl.obolibrary.org/obo/GO_0061720
Added

6-sulfoquinovose(1-) catabolic process to glycerone phosphate and 3-sulfolactaldehyde SubClassOf ATP metabolic process

9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene http://purl.obolibrary.org/obo/GO_0052889
Added

9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene SubClassOf NADP metabolic process

ABC-type D-galactofuranose transporter http://purl.obolibrary.org/obo/GO_0103116
Added

ABC-type D-galactofuranose transporter SubClassOf ATP hydrolysis activity

ABC-type D-methionine transporter activity http://purl.obolibrary.org/obo/GO_0033232
Added

ABC-type D-methionine transporter activity SubClassOf ATP hydrolysis activity

ABC-type D-ribose transporter activity http://purl.obolibrary.org/obo/GO_0015611
Added

ABC-type D-ribose transporter activity SubClassOf ATP hydrolysis activity

ABC-type L-arabinose transporter activity http://purl.obolibrary.org/obo/GO_0015612
Added

ABC-type L-arabinose transporter activity SubClassOf ATP hydrolysis activity

ABC-type azole transporter activity http://purl.obolibrary.org/obo/GO_0140394
Added

ABC-type azole transporter activity SubClassOf ATP hydrolysis activity

ABC-type beta-glucan transporter activity http://purl.obolibrary.org/obo/GO_0015441
Added

ABC-type beta-glucan transporter activity SubClassOf ATP hydrolysis activity

ABC-type bile acid transporter activity http://purl.obolibrary.org/obo/GO_0015432
Added

ABC-type bile acid transporter activity SubClassOf ATP hydrolysis activity

ABC-type fatty-acyl-CoA transporter activity http://purl.obolibrary.org/obo/GO_0015607
Added

ABC-type fatty-acyl-CoA transporter activity SubClassOf ATP hydrolysis activity

ABC-type ferric iron transporter activity http://purl.obolibrary.org/obo/GO_0015408
Added

ABC-type ferric iron transporter activity SubClassOf ATP hydrolysis activity

ABC-type ferric-enterobactin transporter activity http://purl.obolibrary.org/obo/GO_0015624
Added

ABC-type ferric-enterobactin transporter activity SubClassOf ATP hydrolysis activity

ABC-type glutathione S-conjugate transporter activity http://purl.obolibrary.org/obo/GO_0015431
Added

ABC-type glutathione S-conjugate transporter activity SubClassOf ATP hydrolysis activity

ABC-type guanine transporter activity http://purl.obolibrary.org/obo/GO_0008558
Added

ABC-type guanine transporter activity SubClassOf ATP hydrolysis activity

ABC-type heme transporter activity http://purl.obolibrary.org/obo/GO_0015439
Added

ABC-type heme transporter activity SubClassOf ATP hydrolysis activity

ABC-type maltose transporter activity http://purl.obolibrary.org/obo/GO_0015423
Added

ABC-type maltose transporter activity SubClassOf ATP hydrolysis activity

ABC-type manganese transporter activity http://purl.obolibrary.org/obo/GO_0015410
Added

ABC-type manganese transporter activity SubClassOf ATP hydrolysis activity

ABC-type molybdate transporter activity http://purl.obolibrary.org/obo/GO_0015412
Added

ABC-type molybdate transporter activity SubClassOf ATP hydrolysis activity

ABC-type nickel transporter activity http://purl.obolibrary.org/obo/GO_0015413
Added

ABC-type nickel transporter activity SubClassOf ATP hydrolysis activity

ABC-type nitrate transporter activity http://purl.obolibrary.org/obo/GO_0015414
Added

ABC-type nitrate transporter activity SubClassOf ATP hydrolysis activity

ABC-type nitrate transporter activity SubClassOf anion channel activity

ABC-type peptide transporter activity http://purl.obolibrary.org/obo/GO_0015440
Added

ABC-type peptide transporter activity SubClassOf ATP hydrolysis activity

ABC-type phosphonate transporter activity http://purl.obolibrary.org/obo/GO_0015416
Added

ABC-type phosphonate transporter activity SubClassOf ATP hydrolysis activity

ABC-type polyamine transporter activity http://purl.obolibrary.org/obo/GO_0015417
Added

ABC-type polyamine transporter activity SubClassOf ATP hydrolysis activity

ABC-type quaternary ammonium compound transporting activity http://purl.obolibrary.org/obo/GO_0015418
Added

ABC-type quaternary ammonium compound transporting activity SubClassOf ATP hydrolysis activity

ABC-type sulfate transporter activity http://purl.obolibrary.org/obo/GO_0015419
Added

ABC-type sulfate transporter activity SubClassOf ATP hydrolysis activity

ABC-type thiosulfate transporter activity http://purl.obolibrary.org/obo/GO_0102025
Removed

ABC-type thiosulfate transporter activity SubClassOf sulfur compound transmembrane transporter activity

ABC-type thiosulfate transporter activity SubClassOf part of some thiosulfate transport

Added

ABC-type thiosulfate transporter activity SubClassOf ATP hydrolysis activity

ABC-type thiosulfate transporter activity SubClassOf thiosulfate transmembrane transporter activity

ABC-type tungstate transporter activity http://purl.obolibrary.org/obo/GO_1901238
Added

ABC-type tungstate transporter activity SubClassOf ATP hydrolysis activity

ABC-type vitamin B12 transporter activity http://purl.obolibrary.org/obo/GO_0015420
Added

ABC-type vitamin B12 transporter activity SubClassOf ATP hydrolysis activity

ABC-type zinc transporter activity http://purl.obolibrary.org/obo/GO_0015633
Removed

ABC-type zinc transporter activity SubClassOf transition metal ion transmembrane transporter activity

ABC-type zinc transporter activity SubClassOf transports or maintains localization of some zinc cation

ABC-type zinc transporter activity SubClassOf part of some zinc ion transmembrane transport

Added

ABC-type zinc transporter activity SubClassOf zinc ion transmembrane transporter activity

ABC-type zinc transporter activity SubClassOf P-type transmembrane transporter activity

ABC-type zinc transporter activity SubClassOf ATP hydrolysis activity

AMP-thymidine kinase activity http://purl.obolibrary.org/obo/GO_0047667
Removed

AMP-thymidine kinase activity SubClassOf phosphotransferase activity, alcohol group as acceptor

AMP-thymidine kinase activity SubClassOf kinase activity

Added

AMP-thymidine kinase activity SubClassOf nucleoside phosphotransferase activity

ATPase-coupled 2-aminoethylphosphonate transporter activity http://purl.obolibrary.org/obo/GO_0033225
Added

ATPase-coupled 2-aminoethylphosphonate transporter activity SubClassOf ATP hydrolysis activity

ATPase-coupled arsenite transmembrane transporter activity http://purl.obolibrary.org/obo/GO_0015446
Added

ATPase-coupled arsenite transmembrane transporter activity SubClassOf ATP hydrolysis activity

ATPase-coupled ectoine transmembrane transporter activity http://purl.obolibrary.org/obo/GO_0033286
Added

ATPase-coupled ectoine transmembrane transporter activity SubClassOf ATP hydrolysis activity

ATPase-coupled phosphate ion transmembrane transporter activity http://purl.obolibrary.org/obo/GO_0015415
Added

ATPase-coupled phosphate ion transmembrane transporter activity SubClassOf ATP hydrolysis activity

ATPase-coupled polar amino acid-transporter activity http://purl.obolibrary.org/obo/GO_0015426
Added

ATPase-coupled polar amino acid-transporter activity SubClassOf ATP hydrolysis activity

ATPase-coupled urea transmembrane transporter activity http://purl.obolibrary.org/obo/GO_0033221
Added

ATPase-coupled urea transmembrane transporter activity SubClassOf ATP hydrolysis activity

BtuCD complex http://purl.obolibrary.org/obo/GO_1990193
Added

BtuCD complex SubClassOf catalytic complex

CDP-choline pathway http://purl.obolibrary.org/obo/GO_0006657
Added

CDP-choline pathway SubClassOf ATP metabolic process

D(-)-lactate biosynthetic process from pyruvate http://purl.obolibrary.org/obo/GO_0019245
Added

D(-)-lactate biosynthetic process from pyruvate SubClassOf NADH metabolic process

D(-)-lactate biosynthetic process from pyruvate SubClassOf NAD metabolic process

D-lactate biosynthetic process from methylglyoxal via (R)-lactaldehyde http://purl.obolibrary.org/obo/GO_0019248
Added

D-lactate biosynthetic process from methylglyoxal via (R)-lactaldehyde SubClassOf NAD metabolic process

D-lactate biosynthetic process from methylglyoxal via (R)-lactaldehyde SubClassOf NADH metabolic process

D-lactate biosynthetic process from methylglyoxal via (R)-lactaldehyde SubClassOf NADP metabolic process

D-threo-aldose 1-dehydrogenase activity http://purl.obolibrary.org/obo/GO_0047834
Removed

D-threo-aldose 1-dehydrogenase activity SubClassOf oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Added

D-threo-aldose 1-dehydrogenase activity SubClassOf aldose 1-dehydrogenase activity

Entner-Doudoroff pathway through gluconate http://purl.obolibrary.org/obo/GO_0061679
Added

Entner-Doudoroff pathway through gluconate SubClassOf NADP metabolic process

Entner-Doudoroff pathway through gluconate to D-glyceraldehyde-3-phosphate http://purl.obolibrary.org/obo/GO_0061681
Added

Entner-Doudoroff pathway through gluconate to D-glyceraldehyde-3-phosphate SubClassOf ATP metabolic process

GDP-mannose biosynthetic process from mannose http://purl.obolibrary.org/obo/GO_0061728
Added

GDP-mannose biosynthetic process from mannose SubClassOf ATP metabolic process

ITPase activity http://purl.obolibrary.org/obo/GO_0103023
Removed

ITPase activity SubClassOf hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides

Added

ITPase activity SubClassOf nucleoside-triphosphatase activity

L(+)-lactate biosynthetic process from pyruvate http://purl.obolibrary.org/obo/GO_0019246
Added

L(+)-lactate biosynthetic process from pyruvate SubClassOf NAD metabolic process

L(+)-lactate biosynthetic process from pyruvate SubClassOf NADH metabolic process

NAD+ synthase (glutamine-hydrolyzing) activity http://purl.obolibrary.org/obo/GO_0003952
Added

NAD+ synthase (glutamine-hydrolyzing) activity SubClassOf ATP diphosphatase activity

NAD-retinol dehydrogenase activity http://purl.obolibrary.org/obo/GO_0004745
Removed

NAD-retinol dehydrogenase activity SubClassOf oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Added

NAD-retinol dehydrogenase activity SubClassOf alcohol dehydrogenase [NAD(P)+] activity

P-type cadmium transporter activity http://purl.obolibrary.org/obo/GO_0008551
Added

P-type cadmium transporter activity SubClassOf ATP hydrolysis activity

P-type calcium transporter activity http://purl.obolibrary.org/obo/GO_0005388
Removed

P-type calcium transporter activity SubClassOf calcium ion transmembrane transporter activity

P-type calcium transporter activity SubClassOf P-type transmembrane transporter activity

P-type calcium transporter activity SubClassOf ATPase-coupled cation transmembrane transporter activity

Added

P-type calcium transporter activity SubClassOf P-type proton-exporting transporter activity

P-type calcium transporter activity SubClassOf calcium:proton antiporter activity

P-type calcium transporter activity SubClassOf ATP hydrolysis activity

P-type calcium transporter activity involved in regulation of postsynaptic cytosolic calcium ion concentration http://purl.obolibrary.org/obo/GO_1905059
Removed

P-type calcium transporter activity involved in regulation of postsynaptic cytosolic calcium ion concentration SubClassOf part of some regulation of postsynaptic cytosolic calcium ion concentration

Added

P-type calcium transporter activity involved in regulation of postsynaptic cytosolic calcium ion concentration SubClassOf calcium:cation antiporter activity involved in regulation of postsynaptic cytosolic calcium ion concentration

P-type calcium transporter activity involved in regulation of presynaptic cytosolic calcium ion concentration http://purl.obolibrary.org/obo/GO_1905056
Removed

P-type calcium transporter activity involved in regulation of presynaptic cytosolic calcium ion concentration SubClassOf part of some regulation of presynaptic cytosolic calcium ion concentration

Added

P-type calcium transporter activity involved in regulation of presynaptic cytosolic calcium ion concentration SubClassOf calcium:cation antiporter activity involved in regulation of presynaptic cytosolic calcium ion concentration

P-type cobalt transporter activity http://purl.obolibrary.org/obo/GO_0032778
Added

P-type cobalt transporter activity SubClassOf ATP hydrolysis activity

P-type divalent copper transporter activity http://purl.obolibrary.org/obo/GO_0043682
Added

P-type divalent copper transporter activity SubClassOf ATP hydrolysis activity

P-type magnesium transporter activity http://purl.obolibrary.org/obo/GO_0015444
Added

P-type magnesium transporter activity SubClassOf ATP hydrolysis activity

P-type monovalent copper transporter activity http://purl.obolibrary.org/obo/GO_0140581
Removed

P-type monovalent copper transporter activity SubClassOf ATPase-coupled cation transmembrane transporter activity

P-type monovalent copper transporter activity SubClassOf P-type transmembrane transporter activity

P-type monovalent copper transporter activity SubClassOf copper ion transmembrane transporter activity

Added

P-type monovalent copper transporter activity SubClassOf P-type divalent copper transporter activity

P-type potassium transmembrane transporter activity http://purl.obolibrary.org/obo/GO_0008556
Added

P-type potassium transmembrane transporter activity SubClassOf ATP hydrolysis activity

P-type silver transporter activity http://purl.obolibrary.org/obo/GO_0015445
Added

P-type silver transporter activity SubClassOf ATP hydrolysis activity

P-type sodium transporter activity http://purl.obolibrary.org/obo/GO_0008554
Added

P-type sodium transporter activity SubClassOf ATP hydrolysis activity

P-type zinc transporter activity http://purl.obolibrary.org/obo/GO_0016463
Removed

P-type zinc transporter activity SubClassOf transports or maintains localization of some zinc cation

P-type zinc transporter activity SubClassOf transition metal ion transmembrane transporter activity

Added

P-type zinc transporter activity SubClassOf zinc ion transmembrane transporter activity

P-type zinc transporter activity SubClassOf ABC-type transporter activity

P-type zinc transporter activity SubClassOf ATP hydrolysis activity

S-alkylcysteine lyase activity http://purl.obolibrary.org/obo/GO_0050271
Removed

S-alkylcysteine lyase activity SubClassOf carbon-sulfur lyase activity

Added

S-alkylcysteine lyase activity SubClassOf cysteine-S-conjugate beta-lyase activity

T2-induced deoxynucleotide kinase activity http://purl.obolibrary.org/obo/GO_0050316
Removed

T2-induced deoxynucleotide kinase activity SubClassOf kinase activity

T2-induced deoxynucleotide kinase activity SubClassOf phosphotransferase activity, phosphate group as acceptor

Added

T2-induced deoxynucleotide kinase activity SubClassOf (deoxy)nucleoside-phosphate kinase activity

UDP-N-acetylgalactosamine diphosphorylase activity http://purl.obolibrary.org/obo/GO_0052630
Removed

UDP-N-acetylgalactosamine diphosphorylase activity SubClassOf uridylyltransferase activity

Added

UDP-N-acetylgalactosamine diphosphorylase activity SubClassOf UTP-monosaccharide-1-phosphate uridylyltransferase activity

UDP-glucose:hexose-1-phosphate uridylyltransferase activity http://purl.obolibrary.org/obo/GO_0008108
Added

UDP-glucose:hexose-1-phosphate uridylyltransferase activity SubClassOf UDP-glucose 4-epimerase activity

acetate-CoA ligase activity http://purl.obolibrary.org/obo/GO_0003987
Removed

acetate-CoA ligase activity SubClassOf acid-thiol ligase activity

acetate-CoA ligase activity SubClassOf CoA-ligase activity

Added

acetate-CoA ligase activity SubClassOf butyrate-CoA ligase activity

acetoacetate-CoA ligase activity http://purl.obolibrary.org/obo/GO_0030729
Removed

acetoacetate-CoA ligase activity SubClassOf CoA-ligase activity

acetoacetate-CoA ligase activity SubClassOf acid-thiol ligase activity

Added

acetoacetate-CoA ligase activity SubClassOf butyrate-CoA ligase activity

acetoacetyl-CoA hydrolase activity http://purl.obolibrary.org/obo/GO_0047603
Removed

acetoacetyl-CoA hydrolase activity SubClassOf CoA hydrolase activity

Added

acetoacetyl-CoA hydrolase activity SubClassOf acyl-CoA hydrolase activity

acetyl-CoA C-myristoyltransferase activity http://purl.obolibrary.org/obo/GO_0050633
Removed

acetyl-CoA C-myristoyltransferase activity SubClassOf C-acyltransferase activity

Added

acetyl-CoA C-myristoyltransferase activity SubClassOf acetyl-CoA C-acyltransferase activity

aflatoxin biosynthetic process http://purl.obolibrary.org/obo/GO_0045122
Added

aflatoxin biosynthetic process SubClassOf NADH metabolic process

aflatoxin biosynthetic process SubClassOf NAD metabolic process

aflatoxin biosynthetic process SubClassOf NADP metabolic process

all-trans-retinyl-palmitate hydrolase, 11-cis retinol forming activity http://purl.obolibrary.org/obo/GO_0052884
Removed

all-trans-retinyl-palmitate hydrolase, 11-cis retinol forming activity SubClassOf carboxylic ester hydrolase activity

all-trans-retinyl-palmitate hydrolase, 11-cis retinol forming activity SubClassOf part of some retinol metabolic process

Added

all-trans-retinyl-palmitate hydrolase, 11-cis retinol forming activity SubClassOf all-trans-retinyl-ester hydrolase, 11-cis retinol forming activity

all-trans-retinyl-palmitate hydrolase, 11-cis retinol forming activity SubClassOf retinyl-palmitate esterase activity

all-trans-retinyl-palmitate hydrolase, all-trans-retinol forming activity http://purl.obolibrary.org/obo/GO_0047376
Removed

all-trans-retinyl-palmitate hydrolase, all-trans-retinol forming activity SubClassOf carboxylic ester hydrolase activity

all-trans-retinyl-palmitate hydrolase, all-trans-retinol forming activity SubClassOf part of some retinol metabolic process

Added

all-trans-retinyl-palmitate hydrolase, all-trans-retinol forming activity SubClassOf retinyl-palmitate esterase activity

allyl-alcohol dehydrogenase activity http://purl.obolibrary.org/obo/GO_0047655
Removed

allyl-alcohol dehydrogenase activity SubClassOf oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Added

allyl-alcohol dehydrogenase activity SubClassOf alcohol dehydrogenase (NADP+) activity

alpha-1,4-glucan synthase activity http://purl.obolibrary.org/obo/GO_0033201
Removed

alpha-1,4-glucan synthase activity SubClassOf transferase activity, transferring hexosyl groups

Added

alpha-1,4-glucan synthase activity SubClassOf NDP-glucose-starch glucosyltransferase activity

ammonium transmembrane transporter complex http://purl.obolibrary.org/obo/GO_0110067
Added

ammonium transmembrane transporter complex SubClassOf catalytic complex

anandamide amidohydrolase activity http://purl.obolibrary.org/obo/GO_0103073
Removed

anandamide amidohydrolase activity SubClassOf hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides

Added

anandamide amidohydrolase activity SubClassOf N-(long-chain-acyl)ethanolamine deacylase activity

androstan-3-alpha,17-beta-diol dehydrogenase activity http://purl.obolibrary.org/obo/GO_0047044
Added

androstan-3-alpha,17-beta-diol dehydrogenase activity SubClassOf alcohol dehydrogenase (NAD+) activity

anthranilate-CoA ligase activity http://purl.obolibrary.org/obo/GO_0018860
Removed

anthranilate-CoA ligase activity SubClassOf acid-thiol ligase activity

anthranilate-CoA ligase activity SubClassOf CoA-ligase activity

Added

anthranilate-CoA ligase activity SubClassOf butyrate-CoA ligase activity

aryl-alcohol dehydrogenase (NAD+) activity http://purl.obolibrary.org/obo/GO_0018456
Removed

aryl-alcohol dehydrogenase (NAD+) activity SubClassOf oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Added

aryl-alcohol dehydrogenase (NAD+) activity SubClassOf alcohol dehydrogenase [NAD(P)+] activity

aryl-alcohol dehydrogenase (NADP+) activity http://purl.obolibrary.org/obo/GO_0047681
Removed

aryl-alcohol dehydrogenase (NADP+) activity SubClassOf oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Added

aryl-alcohol dehydrogenase (NADP+) activity SubClassOf alcohol dehydrogenase (NADP+) activity

aryl-alcohol oxidase activity http://purl.obolibrary.org/obo/GO_0047682
Removed

aryl-alcohol oxidase activity SubClassOf oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor

Added

aryl-alcohol oxidase activity SubClassOf alcohol oxidase activity

asparagine synthase (glutamine-hydrolyzing) activity http://purl.obolibrary.org/obo/GO_0004066
Added

asparagine synthase (glutamine-hydrolyzing) activity SubClassOf ATP diphosphatase activity

aurachin C epoxide hydrolase/isomerase activity http://purl.obolibrary.org/obo/GO_0102564
Added

aurachin C epoxide hydrolase/isomerase activity SubClassOf alcohol dehydrogenase (NAD+) activity

benzil reductase [(S)-benzoin-forming] activity http://purl.obolibrary.org/obo/GO_0102306
Removed

benzil reductase [(S)-benzoin-forming] activity SubClassOf oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Added

benzil reductase [(S)-benzoin-forming] activity SubClassOf carbonyl reductase (NADPH) activity

benzoate-CoA ligase activity http://purl.obolibrary.org/obo/GO_0018858
Removed

benzoate-CoA ligase activity SubClassOf CoA-ligase activity

benzoate-CoA ligase activity SubClassOf acid-thiol ligase activity

Added

benzoate-CoA ligase activity SubClassOf butyrate-CoA ligase activity

benzoylformate decarboxylase activity http://purl.obolibrary.org/obo/GO_0050695
Removed

benzoylformate decarboxylase activity SubClassOf carboxy-lyase activity

Added

benzoylformate decarboxylase activity SubClassOf pyruvate decarboxylase activity

beta-D-galactose-importing ATPase activity http://purl.obolibrary.org/obo/GO_0102014
Added

beta-D-galactose-importing ATPase activity SubClassOf ATP hydrolysis activity

biotin-CoA ligase activity http://purl.obolibrary.org/obo/GO_0047707
Removed

biotin-CoA ligase activity SubClassOf CoA-ligase activity

biotin-CoA ligase activity SubClassOf acid-thiol ligase activity

Added

biotin-CoA ligase activity SubClassOf butyrate-CoA ligase activity

branched-chain-2-oxoacid decarboxylase activity http://purl.obolibrary.org/obo/GO_0047433
Removed

branched-chain-2-oxoacid decarboxylase activity SubClassOf carboxy-lyase activity

Added

branched-chain-2-oxoacid decarboxylase activity SubClassOf pyruvate decarboxylase activity

calcium, potassium:sodium antiporter activity http://purl.obolibrary.org/obo/GO_0008273
Removed

calcium, potassium:sodium antiporter activity SubClassOf potassium ion antiporter activity

Added

calcium, potassium:sodium antiporter activity SubClassOf potassium:proton antiporter activity

calcium, potassium:sodium antiporter activity SubClassOf potassium:sodium symporter activity

calcium:proton antiporter complex http://purl.obolibrary.org/obo/GO_0061993
Added

calcium:proton antiporter complex SubClassOf catalytic complex

calcium:sodium antiporter activity http://purl.obolibrary.org/obo/GO_0005432
Removed

calcium:sodium antiporter activity SubClassOf calcium:cation antiporter activity

calcium:sodium antiporter activity SubClassOf imports some sodium(1+)

calcium:sodium antiporter activity SubClassOf sodium ion transmembrane transporter activity

Added

calcium:sodium antiporter activity SubClassOf sodium:proton antiporter activity

calcium:sodium antiporter activity SubClassOf exports some calcium(2+)

calcium:sodium antiporter activity involved in regulation of cardiac muscle cell membrane potential http://purl.obolibrary.org/obo/GO_0086038
Removed

calcium:sodium antiporter activity involved in regulation of cardiac muscle cell membrane potential SubClassOf part of some regulation of cardiac muscle cell membrane potential

Added

calcium:sodium antiporter activity involved in regulation of cardiac muscle cell membrane potential SubClassOf sodium:proton antiporter activity involved in regulation of cardiac muscle cell membrane potential

carbon-nitrogen ligase activity on lipid II http://purl.obolibrary.org/obo/GO_0140282
Added

carbon-nitrogen ligase activity on lipid II SubClassOf ATPase-coupled polar amino acid-transporter activity

channel activator activity http://purl.obolibrary.org/obo/GO_0099103
Removed

channel activator activity SubClassOf molecular_function

Added

channel activator activity SubClassOf enzyme activator activity

channel regulator activity http://purl.obolibrary.org/obo/GO_0016247
Removed

channel regulator activity SubClassOf molecular function regulator

Added

channel regulator activity SubClassOf enzyme regulator activity

cholest-5-ene-3-beta,7-alpha-diol 3-beta-dehydrogenase activity http://purl.obolibrary.org/obo/GO_0047016
Removed

cholest-5-ene-3-beta,7-alpha-diol 3-beta-dehydrogenase activity SubClassOf oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Added

cholest-5-ene-3-beta,7-alpha-diol 3-beta-dehydrogenase activity SubClassOf alcohol dehydrogenase (NAD+) activity

cholesterol alpha-glucosyltransferase activity http://purl.obolibrary.org/obo/GO_0102205
Removed

cholesterol alpha-glucosyltransferase activity SubClassOf transferase activity, transferring hexosyl groups

Added

cholesterol alpha-glucosyltransferase activity SubClassOf sterol 3-beta-glucosyltransferase activity

cholesterol dehydrogenase activity http://purl.obolibrary.org/obo/GO_0102294
Removed

cholesterol dehydrogenase activity SubClassOf oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Added

cholesterol dehydrogenase activity SubClassOf 3-beta-hydroxy-delta5-steroid dehydrogenase activity

cholesterol oxidase activity http://purl.obolibrary.org/obo/GO_0016995
Removed

cholesterol oxidase activity SubClassOf oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor

Added

cholesterol oxidase activity SubClassOf secondary-alcohol oxidase activity

cinnamyl-alcohol dehydrogenase activity http://purl.obolibrary.org/obo/GO_0045551
Removed

cinnamyl-alcohol dehydrogenase activity SubClassOf oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Added

cinnamyl-alcohol dehydrogenase activity SubClassOf alcohol dehydrogenase (NADP+) activity

cobalamin transport complex http://purl.obolibrary.org/obo/GO_1990191
Added

cobalamin transport complex SubClassOf catalytic complex

copper ion transmembrane transporter complex http://purl.obolibrary.org/obo/GO_1903113
Added

copper ion transmembrane transporter complex SubClassOf catalytic complex

corticosterone 18-monooxygenase activity http://purl.obolibrary.org/obo/GO_0047783
Removed

corticosterone 18-monooxygenase activity SubClassOf oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced iron-sulfur protein as one donor, and incorporation of one atom of oxygen

Added

corticosterone 18-monooxygenase activity SubClassOf steroid 11-beta-monooxygenase activity

cyclohexanol dehydrogenase activity http://purl.obolibrary.org/obo/GO_0018460
Removed

cyclohexanol dehydrogenase activity SubClassOf oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Added

cyclohexanol dehydrogenase activity SubClassOf alcohol dehydrogenase (NAD+) activity

cysteine transmembrane transporter activity http://purl.obolibrary.org/obo/GO_0033229
Added

cysteine transmembrane transporter activity SubClassOf ATP hydrolysis activity

cytochrome bo3 ubiquinol oxidase activity http://purl.obolibrary.org/obo/GO_0009486
Added

cytochrome bo3 ubiquinol oxidase activity SubClassOf ubiquinol:oxygen oxidoreductase activity

dCMP kinase activity http://purl.obolibrary.org/obo/GO_0036431
Added

dCMP kinase activity SubClassOf (deoxy)nucleoside-phosphate kinase activity

diacetyl reductase ((R)-acetoin forming) activity http://purl.obolibrary.org/obo/GO_0052587
Added

diacetyl reductase ((R)-acetoin forming) activity SubClassOf alcohol dehydrogenase (NAD+) activity

diacetyl reductase ((S)-acetoin forming) activity http://purl.obolibrary.org/obo/GO_0052588
Added

diacetyl reductase ((S)-acetoin forming) activity SubClassOf alcohol dehydrogenase (NAD+) activity

ecdysone oxidase activity http://purl.obolibrary.org/obo/GO_0047875
Removed

ecdysone oxidase activity SubClassOf oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor

Added

ecdysone oxidase activity SubClassOf secondary-alcohol oxidase activity

ent-kaurene oxidation to kaurenoic acid http://purl.obolibrary.org/obo/GO_0010241
Added

ent-kaurene oxidation to kaurenoic acid SubClassOf NADP metabolic process

enzyme IIA-maltose transporter complex http://purl.obolibrary.org/obo/GO_1990154
Added

enzyme IIA-maltose transporter complex SubClassOf catalytic complex

ethanolamine oxidase activity http://purl.obolibrary.org/obo/GO_0047883
Removed

ethanolamine oxidase activity SubClassOf oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor

Added

ethanolamine oxidase activity SubClassOf aliphatic-amine oxidase activity

ethylglyoxal reductase (NADH-dependent, hydroxyacetone-forming) activity http://purl.obolibrary.org/obo/GO_0103030
Removed

ethylglyoxal reductase (NADH-dependent, hydroxyacetone-forming) activity SubClassOf oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Added

ethylglyoxal reductase (NADH-dependent, hydroxyacetone-forming) activity SubClassOf alcohol dehydrogenase [NAD(P)+] activity

farnesol dehydrogenase activity http://purl.obolibrary.org/obo/GO_0047886
Removed

farnesol dehydrogenase activity SubClassOf oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Added

farnesol dehydrogenase activity SubClassOf alcohol dehydrogenase (NADP+) activity

fatty acid beta-oxidation http://purl.obolibrary.org/obo/GO_0006635
Added

fatty acid beta-oxidation SubClassOf ATP metabolic process

fatty acid beta-oxidation using acyl-CoA dehydrogenase http://purl.obolibrary.org/obo/GO_0033539
Added

fatty acid beta-oxidation using acyl-CoA dehydrogenase SubClassOf NADP metabolic process

ferrous iron transmembrane transporter activity http://purl.obolibrary.org/obo/GO_0015093
Removed

ferrous iron transmembrane transporter activity SubClassOf iron ion transmembrane transporter activity

Added

ferrous iron transmembrane transporter activity SubClassOf transition metal ion transmembrane transporter activity

ferrous iron transmembrane transporter activity SubClassOf part of some iron ion transmembrane transport

flavonol synthase activity http://purl.obolibrary.org/obo/GO_0045431
Removed

flavonol synthase activity SubClassOf 2-oxoglutarate-dependent dioxygenase activity

Added

flavonol synthase activity SubClassOf flavone synthase activity

fructose catabolic process to hydroxyacetone phosphate and glyceraldehyde-3-phosphate http://purl.obolibrary.org/obo/GO_0061624
Added

fructose catabolic process to hydroxyacetone phosphate and glyceraldehyde-3-phosphate SubClassOf ATP metabolic process

galactose to glucose-1-phosphate metabolic process http://purl.obolibrary.org/obo/GO_0061612
Added

galactose to glucose-1-phosphate metabolic process SubClassOf ATP metabolic process

gallate catabolic process via gallate dioxygenase activity http://purl.obolibrary.org/obo/GO_0019398
Added

gallate catabolic process via gallate dioxygenase activity SubClassOf NADP metabolic process

geraniol dehydrogenase activity http://purl.obolibrary.org/obo/GO_0047924
Removed

geraniol dehydrogenase activity SubClassOf oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Added

geraniol dehydrogenase activity SubClassOf alcohol dehydrogenase (NADP+) activity

gliotoxin biosynthetic process http://purl.obolibrary.org/obo/GO_2001310
Added

gliotoxin biosynthetic process SubClassOf NADP metabolic process

glucose catabolic process to pyruvate utilizing ADP http://purl.obolibrary.org/obo/GO_0061719
Added

glucose catabolic process to pyruvate utilizing ADP SubClassOf NADP metabolic process

glucose catabolic process to pyruvate utilizing ADP SubClassOf ATP metabolic process

glutamate catabolic process to 4-hydroxybutyrate http://purl.obolibrary.org/obo/GO_0036241
Added

glutamate catabolic process to 4-hydroxybutyrate SubClassOf NADP metabolic process

glutamate catabolic process to 4-hydroxybutyrate SubClassOf NAD metabolic process

glutamate catabolic process to 4-hydroxybutyrate SubClassOf NADH metabolic process

glutamine catabolic process to fumarate, using glutamate synthase (NADPH) http://purl.obolibrary.org/obo/GO_0019461
Added

glutamine catabolic process to fumarate, using glutamate synthase (NADPH) SubClassOf NADP metabolic process

glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity http://purl.obolibrary.org/obo/GO_0050567
Added

glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity SubClassOf ATPase-coupled polar amino acid-transporter activity

glyceraldehyde-3-phosphate dehydrogenase (NAD+) (non-phosphorylating) activity http://purl.obolibrary.org/obo/GO_0043878
Removed

glyceraldehyde-3-phosphate dehydrogenase (NAD+) (non-phosphorylating) activity SubClassOf oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor

Added

glyceraldehyde-3-phosphate dehydrogenase (NAD+) (non-phosphorylating) activity SubClassOf aldehyde dehydrogenase (NAD+) activity

glycerol to glycerone phosphate metabolic process http://purl.obolibrary.org/obo/GO_0061610
Added

glycerol to glycerone phosphate metabolic process SubClassOf ATP metabolic process

glycerol to glycerone phosphate metabolic process SubClassOf NADP metabolic process

glycerol to glycerone phosphate metabolic process SubClassOf NAD metabolic process

glycerol to glycerone phosphate metabolic process SubClassOf NADH metabolic process

glycerophosphate shuttle http://purl.obolibrary.org/obo/GO_0006127
Added

glycerophosphate shuttle SubClassOf NADP metabolic process

glycerophospholipid arachidonoyl-transferase (CoA-independent) activity http://purl.obolibrary.org/obo/GO_0047177
Removed

glycerophospholipid arachidonoyl-transferase (CoA-independent) activity SubClassOf transferase activity, transferring acyl groups other than amino-acyl groups

Added

glycerophospholipid arachidonoyl-transferase (CoA-independent) activity SubClassOf glycerophospholipid acyltransferase (CoA-dependent) activity

glycine N-benzoyltransferase activity http://purl.obolibrary.org/obo/GO_0047962
Removed

glycine N-benzoyltransferase activity SubClassOf transferase activity, transferring acyl groups other than amino-acyl groups

Added

glycine N-benzoyltransferase activity SubClassOf glycine N-acyltransferase activity

glycine N-choloyltransferase activity http://purl.obolibrary.org/obo/GO_0047963
Removed

glycine N-choloyltransferase activity SubClassOf transferase activity, transferring acyl groups other than amino-acyl groups

Added

glycine N-choloyltransferase activity SubClassOf glycine N-acyltransferase activity

glycolytic fermentation http://purl.obolibrary.org/obo/GO_0019660
Added

glycolytic fermentation SubClassOf NADP metabolic process

glycolytic fermentation to butanediol http://purl.obolibrary.org/obo/GO_0019650
Added

glycolytic fermentation to butanediol SubClassOf NAD metabolic process

glycolytic fermentation to butanediol SubClassOf NADH metabolic process

glycolytic process http://purl.obolibrary.org/obo/GO_0006096
Added

glycolytic process SubClassOf NADP metabolic process

glycolytic process from glycerol http://purl.obolibrary.org/obo/GO_0061613
Added

glycolytic process from glycerol SubClassOf NADH metabolic process

glycolytic process from glycerol SubClassOf NAD metabolic process

guanosine phosphorylase activity http://purl.obolibrary.org/obo/GO_0047975
Removed

guanosine phosphorylase activity SubClassOf transferase activity, transferring pentosyl groups

Added

guanosine phosphorylase activity SubClassOf purine-nucleoside phosphorylase activity

hexadecanol dehydrogenase activity http://purl.obolibrary.org/obo/GO_0047978
Removed

hexadecanol dehydrogenase activity SubClassOf oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Added

hexadecanol dehydrogenase activity SubClassOf alcohol dehydrogenase [NAD(P)+] activity

high-affinity ferrous iron transmembrane transporter activity http://purl.obolibrary.org/obo/GO_0061840
Removed

high-affinity ferrous iron transmembrane transporter activity SubClassOf ferrous iron transmembrane transporter activity

Added

high-affinity ferrous iron transmembrane transporter activity SubClassOf iron ion transmembrane transporter activity

hydrogen generation via nitrogenase http://purl.obolibrary.org/obo/GO_0044835
Added

hydrogen generation via nitrogenase SubClassOf ATP metabolic process

hydrogen generation via nitrogenase SubClassOf NADP metabolic process

hydroxyphytanate oxidase activity http://purl.obolibrary.org/obo/GO_0047996
Removed

hydroxyphytanate oxidase activity SubClassOf oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor

Added

hydroxyphytanate oxidase activity SubClassOf (S)-2-hydroxy-acid oxidase activity

imidazoleacetate-phosphoribosyldiphosphate ligase activity http://purl.obolibrary.org/obo/GO_0047483
Added

imidazoleacetate-phosphoribosyldiphosphate ligase activity SubClassOf ATP hydrolysis activity

indole-3-acetaldehyde reductase (NADH) activity http://purl.obolibrary.org/obo/GO_0047018
Removed

indole-3-acetaldehyde reductase (NADH) activity SubClassOf oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Added

indole-3-acetaldehyde reductase (NADH) activity SubClassOf alcohol dehydrogenase [NAD(P)+] activity

indole-3-acetaldehyde reductase (NADPH) activity http://purl.obolibrary.org/obo/GO_0047019
Removed

indole-3-acetaldehyde reductase (NADPH) activity SubClassOf oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Added

indole-3-acetaldehyde reductase (NADPH) activity SubClassOf alcohol dehydrogenase (NADP+) activity

indoleacetamide hydrolase activity http://purl.obolibrary.org/obo/GO_0043864
Removed

indoleacetamide hydrolase activity SubClassOf hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides

Added

indoleacetamide hydrolase activity SubClassOf amidase activity

indolepyruvate decarboxylase activity http://purl.obolibrary.org/obo/GO_0047434
Removed

indolepyruvate decarboxylase activity SubClassOf carboxy-lyase activity

Added

indolepyruvate decarboxylase activity SubClassOf pyruvate decarboxylase activity

ion channel complex http://purl.obolibrary.org/obo/GO_0034702
Added

ion channel complex SubClassOf catalytic complex

iron ion transmembrane transporter activity http://purl.obolibrary.org/obo/GO_0005381
Added

iron ion transmembrane transporter activity SubClassOf catalytic activity

iron ion transmembrane transporter inhibitor activity http://purl.obolibrary.org/obo/GO_0097690
Removed

iron ion transmembrane transporter inhibitor activity SubClassOf molecular function regulator

Added

iron ion transmembrane transporter inhibitor activity SubClassOf enzyme regulator activity

iron-cytochrome-c reductase activity http://purl.obolibrary.org/obo/GO_0047726
Added

iron-cytochrome-c reductase activity SubClassOf iron ion transmembrane transporter activity

isopropanol dehydrogenase (NADP+) activity http://purl.obolibrary.org/obo/GO_0050009
Removed

isopropanol dehydrogenase (NADP+) activity SubClassOf oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Added

isopropanol dehydrogenase (NADP+) activity SubClassOf carbonyl reductase (NADPH) activity

lactate biosynthetic process from pyruvate http://purl.obolibrary.org/obo/GO_0019244
Added

lactate biosynthetic process from pyruvate SubClassOf NADP metabolic process

long-chain fatty acid-CoA ligase activity http://purl.obolibrary.org/obo/GO_0004467
Removed

long-chain fatty acid-CoA ligase activity SubClassOf CoA-ligase activity

Added

long-chain fatty acid-CoA ligase activity SubClassOf butyrate-CoA ligase activity

long-chain-alcohol oxidase activity http://purl.obolibrary.org/obo/GO_0046577
Removed

long-chain-alcohol oxidase activity SubClassOf oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor

Added

long-chain-alcohol oxidase activity SubClassOf alcohol oxidase activity

lysine biosynthetic process via diaminopimelate, dehydrogenase pathway http://purl.obolibrary.org/obo/GO_0033361
Added

lysine biosynthetic process via diaminopimelate, dehydrogenase pathway SubClassOf NADP metabolic process

mRNA N-acetyltransferase activity http://purl.obolibrary.org/obo/GO_0106162
Added

mRNA N-acetyltransferase activity SubClassOf ATP hydrolysis activity

maltose epimerase activity http://purl.obolibrary.org/obo/GO_0050558
Added

maltose epimerase activity SubClassOf maltose transmembrane transporter activity

maltose transport complex http://purl.obolibrary.org/obo/GO_1990060
Added

maltose transport complex SubClassOf catalytic complex

mannose to fructose-6-phosphate metabolic process http://purl.obolibrary.org/obo/GO_0061611
Added

mannose to fructose-6-phosphate metabolic process SubClassOf ATP metabolic process

medium-chain fatty acid-CoA ligase activity http://purl.obolibrary.org/obo/GO_0031956
Removed

medium-chain fatty acid-CoA ligase activity SubClassOf CoA-ligase activity

Added

medium-chain fatty acid-CoA ligase activity SubClassOf butyrate-CoA ligase activity

methanol dehydrogenase activity http://purl.obolibrary.org/obo/GO_0050093
Removed

methanol dehydrogenase activity SubClassOf oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Added

methanol dehydrogenase activity SubClassOf alcohol dehydrogenase [NAD(P)+] activity

methanol ferricytochrome-c oxidoreductase activity http://purl.obolibrary.org/obo/GO_0052930
Removed

methanol ferricytochrome-c oxidoreductase activity SubClassOf oxidoreductase activity, acting on the CH-OH group of donors, cytochrome as acceptor

Added

methanol ferricytochrome-c oxidoreductase activity SubClassOf alcohol dehydrogenase (cytochrome c(L)) activity

methylglyoxal reductase (NADPH-dependent, acetol producing) http://purl.obolibrary.org/obo/GO_1990002
Removed

methylglyoxal reductase (NADPH-dependent, acetol producing) SubClassOf oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Added

methylglyoxal reductase (NADPH-dependent, acetol producing) SubClassOf alcohol dehydrogenase (NADP+) activity

mitochondrial acetyl-CoA biosynthetic process from pyruvate http://purl.obolibrary.org/obo/GO_0061732
Added

mitochondrial acetyl-CoA biosynthetic process from pyruvate SubClassOf NADP metabolic process

molybdopterin cofactor biosynthetic process http://purl.obolibrary.org/obo/GO_0032324
Added

molybdopterin cofactor biosynthetic process SubClassOf ATP metabolic process

myristoyl-CoA hydrolase activity http://purl.obolibrary.org/obo/GO_0102991
Removed

myristoyl-CoA hydrolase activity SubClassOf thiolester hydrolase activity

Added

myristoyl-CoA hydrolase activity SubClassOf acyl-CoA hydrolase activity

negative regulation of ATPase-coupled calcium transmembrane transporter activity http://purl.obolibrary.org/obo/GO_1901895
Added

negative regulation of ATPase-coupled calcium transmembrane transporter activity SubClassOf negative regulation of hydrolase activity

negative regulation of P-type sodium:potassium-exchanging transporter activity http://purl.obolibrary.org/obo/GO_1903407
Added

negative regulation of P-type sodium:potassium-exchanging transporter activity SubClassOf negative regulation of hydrolase activity

negative regulation of aflatoxin biosynthetic process http://purl.obolibrary.org/obo/GO_1900178
Added

negative regulation of aflatoxin biosynthetic process SubClassOf negative regulation of NAD metabolic process

negative regulation of anion channel activity http://purl.obolibrary.org/obo/GO_0010360
Added

negative regulation of anion channel activity SubClassOf negative regulation of catalytic activity

negative regulation of calcium:sodium antiporter activity http://purl.obolibrary.org/obo/GO_1903280
Removed

negative regulation of calcium:sodium antiporter activity SubClassOf negative regulation of sodium ion transmembrane transporter activity

Added

negative regulation of calcium:sodium antiporter activity SubClassOf negative regulation of sodium:proton antiporter activity

negative regulation of cation channel activity http://purl.obolibrary.org/obo/GO_2001258
Added

negative regulation of cation channel activity SubClassOf negative regulation of catalytic activity

negative regulation of cholesterol transporter activity http://purl.obolibrary.org/obo/GO_0060695
Added

negative regulation of cholesterol transporter activity SubClassOf negative regulation of catalytic activity

negative regulation of cyclic nucleotide-gated ion channel activity http://purl.obolibrary.org/obo/GO_1902160
Added

negative regulation of cyclic nucleotide-gated ion channel activity SubClassOf negative regulation of catalytic activity

negative regulation of fatty acid beta-oxidation http://purl.obolibrary.org/obo/GO_0031999
Added

negative regulation of fatty acid beta-oxidation SubClassOf negative regulation of ATP metabolic process

negative regulation of holin activity http://purl.obolibrary.org/obo/GO_1901218
Added

negative regulation of holin activity SubClassOf negative regulation of catalytic activity

negative regulation of iron ion transmembrane transporter activity http://purl.obolibrary.org/obo/GO_1904255
Added

negative regulation of iron ion transmembrane transporter activity SubClassOf negative regulation of catalytic activity

negative regulation of light-activated channel activity http://purl.obolibrary.org/obo/GO_0045831
Added

negative regulation of light-activated channel activity SubClassOf negative regulation of catalytic activity

negative regulation of potassium ion transmembrane transporter activity http://purl.obolibrary.org/obo/GO_1901017
Added

negative regulation of potassium ion transmembrane transporter activity SubClassOf negative regulation of catalytic activity

negative regulation of potassium:proton exchanging ATPase activity http://purl.obolibrary.org/obo/GO_1904452
Added

negative regulation of potassium:proton exchanging ATPase activity SubClassOf negative regulation of hydrolase activity

negative regulation of sodium:proton antiporter activity http://purl.obolibrary.org/obo/GO_0032416
Added

negative regulation of sodium:proton antiporter activity SubClassOf negative regulation of catalytic activity

negative regulation of water channel activity http://purl.obolibrary.org/obo/GO_1902428
Added

negative regulation of water channel activity SubClassOf negative regulation of catalytic activity

obsolete ATPase-coupled daunorubicin transmembrane transporter activity http://purl.obolibrary.org/obo/GO_0043216
Added

obsolete ATPase-coupled daunorubicin transmembrane transporter activity SubClassOf ATP hydrolysis activity

obsolete L-ascorbate-cytochrome-b5 reductase activity http://purl.obolibrary.org/obo/GO_0047063
Added

obsolete L-ascorbate-cytochrome-b5 reductase activity SubClassOf transmembrane ascorbate ferrireductase activity

obsolete L-idonate 2-dehydrogenase activity http://purl.obolibrary.org/obo/GO_0050027
Added

obsolete L-idonate 2-dehydrogenase activity SubClassOf catalytic activity

obsolete N2-acetyl-L-lysine deacetylase activity http://purl.obolibrary.org/obo/GO_0043747
Added

obsolete N2-acetyl-L-lysine deacetylase activity SubClassOf catalytic activity

obsolete aquacobalamin reductase (NADPH) activity http://purl.obolibrary.org/obo/GO_0050444
Added

obsolete aquacobalamin reductase (NADPH) activity SubClassOf catalytic activity

obsolete aquacobalamin reductase activity http://purl.obolibrary.org/obo/GO_0047138
Added

obsolete aquacobalamin reductase activity SubClassOf catalytic activity

obsolete ascorbate 2,3-dioxygenase activity http://purl.obolibrary.org/obo/GO_0047687
Added

obsolete ascorbate 2,3-dioxygenase activity SubClassOf catalytic activity

obsolete dihydroorotate oxidase (fumarate) activity http://purl.obolibrary.org/obo/GO_0052888
Added

obsolete dihydroorotate oxidase (fumarate) activity SubClassOf catalytic activity

octanol dehydrogenase activity http://purl.obolibrary.org/obo/GO_0004552
Removed

octanol dehydrogenase activity SubClassOf oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Added

octanol dehydrogenase activity SubClassOf alcohol dehydrogenase [NAD(P)+] activity

oxalate-CoA ligase activity http://purl.obolibrary.org/obo/GO_0050203
Removed

oxalate-CoA ligase activity SubClassOf acid-thiol ligase activity

Added

oxalate-CoA ligase activity SubClassOf dicarboxylate-CoA ligase activity

p-benzoquinone reductase (NADPH) activity http://purl.obolibrary.org/obo/GO_0018541
Removed

p-benzoquinone reductase (NADPH) activity SubClassOf oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor

Added

p-benzoquinone reductase (NADPH) activity SubClassOf NADPH dehydrogenase (quinone) activity

phenylacetate-CoA ligase activity http://purl.obolibrary.org/obo/GO_0047475
Removed

phenylacetate-CoA ligase activity SubClassOf CoA-ligase activity

phenylacetate-CoA ligase activity SubClassOf acid-thiol ligase activity

Added

phenylacetate-CoA ligase activity SubClassOf butyrate-CoA ligase activity

phenylalanine racemase (ATP-hydrolyzing) activity http://purl.obolibrary.org/obo/GO_0047462
Added

phenylalanine racemase (ATP-hydrolyzing) activity SubClassOf ATP diphosphatase activity

phenylpyruvate decarboxylase activity http://purl.obolibrary.org/obo/GO_0050177
Removed

phenylpyruvate decarboxylase activity SubClassOf carboxy-lyase activity

Added

phenylpyruvate decarboxylase activity SubClassOf pyruvate decarboxylase activity

phosphoribosylformylglycinamidine synthase activity http://purl.obolibrary.org/obo/GO_0004642
Added

phosphoribosylformylglycinamidine synthase activity SubClassOf ATPase-coupled polar amino acid-transporter activity

phytanate-CoA ligase activity http://purl.obolibrary.org/obo/GO_0050197
Removed

phytanate-CoA ligase activity SubClassOf CoA-ligase activity

phytanate-CoA ligase activity SubClassOf acid-thiol ligase activity

Added

phytanate-CoA ligase activity SubClassOf butyrate-CoA ligase activity

positive regulation of ATPase-coupled calcium transmembrane transporter activity http://purl.obolibrary.org/obo/GO_1901896
Added

positive regulation of ATPase-coupled calcium transmembrane transporter activity SubClassOf positive regulation of hydrolase activity

positive regulation of P-type sodium:potassium-exchanging transporter activity http://purl.obolibrary.org/obo/GO_1903408
Added

positive regulation of P-type sodium:potassium-exchanging transporter activity SubClassOf positive regulation of hydrolase activity

positive regulation of aflatoxin biosynthetic process http://purl.obolibrary.org/obo/GO_1900179
Added

positive regulation of aflatoxin biosynthetic process SubClassOf positive regulation of NAD metabolic process

positive regulation of anion channel activity http://purl.obolibrary.org/obo/GO_1901529
Added

positive regulation of anion channel activity SubClassOf positive regulation of catalytic activity

positive regulation of calcium:sodium antiporter activity http://purl.obolibrary.org/obo/GO_1903281
Removed

positive regulation of calcium:sodium antiporter activity SubClassOf positive regulation of sodium ion transmembrane transporter activity

Added

positive regulation of calcium:sodium antiporter activity SubClassOf positive regulation of sodium:proton antiporter activity

positive regulation of cation channel activity http://purl.obolibrary.org/obo/GO_2001259
Added

positive regulation of cation channel activity SubClassOf positive regulation of catalytic activity

positive regulation of cyclic nucleotide-gated ion channel activity http://purl.obolibrary.org/obo/GO_1902161
Added

positive regulation of cyclic nucleotide-gated ion channel activity SubClassOf positive regulation of catalytic activity

positive regulation of fatty acid beta-oxidation http://purl.obolibrary.org/obo/GO_0032000
Added

positive regulation of fatty acid beta-oxidation SubClassOf positive regulation of ATP metabolic process

positive regulation of iron ion transmembrane transporter activity http://purl.obolibrary.org/obo/GO_1904256
Added

positive regulation of iron ion transmembrane transporter activity SubClassOf positive regulation of catalytic activity

positive regulation of light-activated channel activity http://purl.obolibrary.org/obo/GO_0045832
Added

positive regulation of light-activated channel activity SubClassOf positive regulation of catalytic activity

positive regulation of potassium ion transmembrane transporter activity http://purl.obolibrary.org/obo/GO_1901018
Added

positive regulation of potassium ion transmembrane transporter activity SubClassOf positive regulation of catalytic activity

positive regulation of potassium:proton exchanging ATPase activity http://purl.obolibrary.org/obo/GO_1904453
Added

positive regulation of potassium:proton exchanging ATPase activity SubClassOf positive regulation of hydrolase activity

positive regulation of sodium:proton antiporter activity http://purl.obolibrary.org/obo/GO_0032417
Added

positive regulation of sodium:proton antiporter activity SubClassOf positive regulation of catalytic activity

positive regulation of water channel activity http://purl.obolibrary.org/obo/GO_1902429
Added

positive regulation of water channel activity SubClassOf positive regulation of catalytic activity

potassium:proton antiporter activity http://purl.obolibrary.org/obo/GO_0015386
Added

potassium:proton antiporter activity SubClassOf solute:proton symporter activity

potassium:proton antiporter complex http://purl.obolibrary.org/obo/GO_1903103
Added

potassium:proton antiporter complex SubClassOf catalytic complex

potassium:proton exchanging ATPase complex http://purl.obolibrary.org/obo/GO_0005889
Added

potassium:proton exchanging ATPase complex SubClassOf catalytic complex

potassium:proton symporter activity http://purl.obolibrary.org/obo/GO_0015387
Removed

potassium:proton symporter activity SubClassOf potassium ion transmembrane transporter activity

Added

potassium:proton symporter activity SubClassOf potassium ion antiporter activity

potassium:proton symporter activity SubClassOf monovalent cation:proton antiporter activity

pristanate-CoA ligase activity http://purl.obolibrary.org/obo/GO_0070251
Removed

pristanate-CoA ligase activity SubClassOf acid-thiol ligase activity

pristanate-CoA ligase activity SubClassOf CoA-ligase activity

Added

pristanate-CoA ligase activity SubClassOf butyrate-CoA ligase activity

propionate CoA-transferase activity http://purl.obolibrary.org/obo/GO_0018729
Removed

propionate CoA-transferase activity SubClassOf CoA-transferase activity

Added

propionate CoA-transferase activity SubClassOf acetate CoA-transferase activity

propionate-CoA ligase activity http://purl.obolibrary.org/obo/GO_0050218
Removed

propionate-CoA ligase activity SubClassOf acid-thiol ligase activity

propionate-CoA ligase activity SubClassOf CoA-ligase activity

Added

propionate-CoA ligase activity SubClassOf butyrate-CoA ligase activity

psilocybin biosynthetic process http://purl.obolibrary.org/obo/GO_0140380
Added

psilocybin biosynthetic process SubClassOf NADP metabolic process

psilocybin biosynthetic process SubClassOf ATP metabolic process

pyridoxal oxidase activity http://purl.obolibrary.org/obo/GO_0004732
Removed

pyridoxal oxidase activity SubClassOf oxidoreductase activity, acting on the aldehyde or oxo group of donors, oxygen as acceptor

Added

pyridoxal oxidase activity SubClassOf aldehyde oxidase activity

pyrophosphate hydrolysis-driven proton transmembrane transporter activity http://purl.obolibrary.org/obo/GO_0009678
Added

pyrophosphate hydrolysis-driven proton transmembrane transporter activity SubClassOf catalytic activity

pyruvate dehydrogenase (NAD+) activity http://purl.obolibrary.org/obo/GO_0034604
Removed

pyruvate dehydrogenase (NAD+) activity SubClassOf pyruvate dehydrogenase [NAD(P)+] activity

Added

pyruvate dehydrogenase (NAD+) activity SubClassOf pyruvate dehydrogenase activity

pyruvate dehydrogenase (NADP+) activity http://purl.obolibrary.org/obo/GO_0050243
Removed

pyruvate dehydrogenase (NADP+) activity SubClassOf pyruvate dehydrogenase [NAD(P)+] activity

Added

pyruvate dehydrogenase (NADP+) activity SubClassOf pyruvate dehydrogenase activity

pyruvate dehydrogenase [NAD(P)+] activity http://purl.obolibrary.org/obo/GO_0034603
Removed

pyruvate dehydrogenase [NAD(P)+] activity SubClassOf oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor

pyruvate dehydrogenase activity http://purl.obolibrary.org/obo/GO_0004738
Removed

pyruvate dehydrogenase activity SubClassOf oxidoreductase activity, acting on the aldehyde or oxo group of donors

Added

pyruvate dehydrogenase activity SubClassOf oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor

regulation of ATPase-coupled calcium transmembrane transporter activity http://purl.obolibrary.org/obo/GO_1901894
Added

regulation of ATPase-coupled calcium transmembrane transporter activity SubClassOf regulation of hydrolase activity

regulation of P-type sodium:potassium-exchanging transporter activity http://purl.obolibrary.org/obo/GO_1903406
Added

regulation of P-type sodium:potassium-exchanging transporter activity SubClassOf regulation of hydrolase activity

regulation of aflatoxin biosynthetic process http://purl.obolibrary.org/obo/GO_1900177
Added

regulation of aflatoxin biosynthetic process SubClassOf regulation of NAD metabolic process

regulation of aflatoxin biosynthetic process SubClassOf regulation of NADP metabolic process

regulation of anion channel activity http://purl.obolibrary.org/obo/GO_0010359
Added

regulation of anion channel activity SubClassOf regulation of catalytic activity

regulation of calcium:sodium antiporter activity http://purl.obolibrary.org/obo/GO_1903279
Removed

regulation of calcium:sodium antiporter activity SubClassOf regulation of sodium ion transmembrane transporter activity

Added

regulation of calcium:sodium antiporter activity SubClassOf regulation of sodium:proton antiporter activity

regulation of cation channel activity http://purl.obolibrary.org/obo/GO_2001257
Added

regulation of cation channel activity SubClassOf regulation of catalytic activity

regulation of cholesterol transporter activity http://purl.obolibrary.org/obo/GO_0060694
Added

regulation of cholesterol transporter activity SubClassOf regulation of catalytic activity

regulation of cyclic nucleotide-gated ion channel activity http://purl.obolibrary.org/obo/GO_1902159
Added

regulation of cyclic nucleotide-gated ion channel activity SubClassOf regulation of catalytic activity

regulation of fatty acid beta-oxidation http://purl.obolibrary.org/obo/GO_0031998
Added

regulation of fatty acid beta-oxidation SubClassOf regulation of ATP metabolic process

regulation of fatty acid beta-oxidation using acyl-CoA dehydrogenase http://purl.obolibrary.org/obo/GO_1904735
Added

regulation of fatty acid beta-oxidation using acyl-CoA dehydrogenase SubClassOf regulation of NADP metabolic process

regulation of gliotoxin biosynthetic process http://purl.obolibrary.org/obo/GO_1900689
Added

regulation of gliotoxin biosynthetic process SubClassOf regulation of NADP metabolic process

regulation of glucose catabolic process to lactate via pyruvate http://purl.obolibrary.org/obo/GO_1904023
Added

regulation of glucose catabolic process to lactate via pyruvate SubClassOf regulation of NADP metabolic process

regulation of glycolytic fermentation to ethanol http://purl.obolibrary.org/obo/GO_2001154
Added

regulation of glycolytic fermentation to ethanol SubClassOf regulation of NADP metabolic process

regulation of glycolytic process http://purl.obolibrary.org/obo/GO_0006110
Added

regulation of glycolytic process SubClassOf regulation of NADP metabolic process

regulation of holin activity http://purl.obolibrary.org/obo/GO_1901217
Added

regulation of holin activity SubClassOf regulation of catalytic activity

regulation of iron ion transmembrane transporter activity http://purl.obolibrary.org/obo/GO_1904254
Added

regulation of iron ion transmembrane transporter activity SubClassOf regulation of catalytic activity

regulation of light-activated channel activity http://purl.obolibrary.org/obo/GO_0016061
Added

regulation of light-activated channel activity SubClassOf regulation of catalytic activity

regulation of potassium ion transmembrane transporter activity http://purl.obolibrary.org/obo/GO_1901016
Added

regulation of potassium ion transmembrane transporter activity SubClassOf regulation of catalytic activity

regulation of potassium:proton exchanging ATPase activity http://purl.obolibrary.org/obo/GO_1904451
Added

regulation of potassium:proton exchanging ATPase activity SubClassOf regulation of hydrolase activity

regulation of proton-transporting ATPase activity, rotational mechanism http://purl.obolibrary.org/obo/GO_0010849
Added

regulation of proton-transporting ATPase activity, rotational mechanism SubClassOf regulation of catalytic activity

regulation of sodium:proton antiporter activity http://purl.obolibrary.org/obo/GO_0032415
Added

regulation of sodium:proton antiporter activity SubClassOf regulation of catalytic activity

regulation of water channel activity http://purl.obolibrary.org/obo/GO_1902427
Added

regulation of water channel activity SubClassOf regulation of catalytic activity

retinal dehydrogenase activity http://purl.obolibrary.org/obo/GO_0001758
Removed

retinal dehydrogenase activity SubClassOf oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor

Added

retinal dehydrogenase activity SubClassOf aldehyde dehydrogenase (NAD+) activity

retinal oxidase activity http://purl.obolibrary.org/obo/GO_0050250
Removed

retinal oxidase activity SubClassOf oxidoreductase activity, acting on the aldehyde or oxo group of donors, oxygen as acceptor

Added

retinal oxidase activity SubClassOf aldehyde oxidase activity

serotonin:sodium symporter activity http://purl.obolibrary.org/obo/GO_0005335
Added

serotonin:sodium symporter activity SubClassOf ATPase-coupled cation transmembrane transporter activity

sinapine esterase activity http://purl.obolibrary.org/obo/GO_0050285
Removed

sinapine esterase activity SubClassOf carboxylic ester hydrolase activity

Added

sinapine esterase activity SubClassOf cholinesterase activity

sinapyl alcohol dehydrogenase activity http://purl.obolibrary.org/obo/GO_0052747
Removed

sinapyl alcohol dehydrogenase activity SubClassOf oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Added

sinapyl alcohol dehydrogenase activity SubClassOf alcohol dehydrogenase (NADP+) activity

sodium:malonate symporter activity http://purl.obolibrary.org/obo/GO_0044668
Removed

sodium:malonate symporter activity SubClassOf malonate(1-) transmembrane transporter activity

Added

sodium:malonate symporter activity SubClassOf transports or maintains localization of some malonate(2-)

sodium:potassium-exchanging ATPase complex http://purl.obolibrary.org/obo/GO_0005890
Added

sodium:potassium-exchanging ATPase complex SubClassOf catalytic complex

succinyl-CoA:(R)-citramalate CoA-transferase activity http://purl.obolibrary.org/obo/GO_0043961
Removed

succinyl-CoA:(R)-citramalate CoA-transferase activity SubClassOf CoA-transferase activity

Added

succinyl-CoA:(R)-citramalate CoA-transferase activity SubClassOf succinate-citramalate CoA-transferase activity

sucrose catabolic process to fructose-6-phosphate and glucose-6-phosphate http://purl.obolibrary.org/obo/GO_0036008
Added

sucrose catabolic process to fructose-6-phosphate and glucose-6-phosphate SubClassOf ATP metabolic process

sucrose catabolic process to fructose-6-phosphate through glucose and fructose http://purl.obolibrary.org/obo/GO_0061705
Added

sucrose catabolic process to fructose-6-phosphate through glucose and fructose SubClassOf ATP metabolic process

sucrose catabolic process via 3'-ketosucrose http://purl.obolibrary.org/obo/GO_0019574
Added

sucrose catabolic process via 3'-ketosucrose SubClassOf ATP metabolic process

sucrose catabolic process via 3'-ketosucrose SubClassOf NADP metabolic process

sulcatone reductase activity http://purl.obolibrary.org/obo/GO_0050491
Removed

sulcatone reductase activity SubClassOf oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Added

sulcatone reductase activity SubClassOf alcohol dehydrogenase (NAD+) activity

sulphoglycolysis http://purl.obolibrary.org/obo/GO_0061722
Added

sulphoglycolysis SubClassOf NADP metabolic process

tRNA 3'-terminal CCA addition http://purl.obolibrary.org/obo/GO_0001680
Added

tRNA 3'-terminal CCA addition SubClassOf ATP metabolic process

taurine transmembrane transporter activity http://purl.obolibrary.org/obo/GO_0005368
Added

taurine transmembrane transporter activity SubClassOf ATP hydrolysis activity

trans-cinnamate-CoA ligase activity http://purl.obolibrary.org/obo/GO_0106290
Removed

trans-cinnamate-CoA ligase activity SubClassOf CoA-ligase activity

Added

trans-cinnamate-CoA ligase activity SubClassOf butyrate-CoA ligase activity

transmembrane receptor protein serine/threonine kinase activity http://purl.obolibrary.org/obo/GO_0004675
Added

transmembrane receptor protein serine/threonine kinase activity SubClassOf purinergic nucleotide receptor activity

transmembrane receptor protein tyrosine kinase activity http://purl.obolibrary.org/obo/GO_0004714
Added

transmembrane receptor protein tyrosine kinase activity SubClassOf purinergic nucleotide receptor activity

tyrosine-ester sulfotransferase activity http://purl.obolibrary.org/obo/GO_0017067
Removed

tyrosine-ester sulfotransferase activity SubClassOf sulfotransferase activity

Added

tyrosine-ester sulfotransferase activity SubClassOf aryl sulfotransferase activity

valine biosynthetic process http://purl.obolibrary.org/obo/GO_0009099
Added

valine biosynthetic process SubClassOf NADP metabolic process

valine dehydrogenase (NAD) activity http://purl.obolibrary.org/obo/GO_0043837
Removed

valine dehydrogenase (NAD) activity SubClassOf oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor

Added

valine dehydrogenase (NAD) activity SubClassOf L-amino-acid dehydrogenase activity

valine-pyruvate transaminase activity http://purl.obolibrary.org/obo/GO_0009042
Removed

valine-pyruvate transaminase activity SubClassOf transaminase activity

Added

valine-pyruvate transaminase activity SubClassOf alanine-oxo-acid transaminase activity

vanillin dehydrogenase activity http://purl.obolibrary.org/obo/GO_0050608
Removed

vanillin dehydrogenase activity SubClassOf oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor

Added

vanillin dehydrogenase activity SubClassOf aldehyde dehydrogenase (NAD+) activity

vellosimine dehydrogenase activity http://purl.obolibrary.org/obo/GO_0050579
Removed

vellosimine dehydrogenase activity SubClassOf oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Added

vellosimine dehydrogenase activity SubClassOf alcohol dehydrogenase (NADP+) activity

very-long-chain enoyl-CoA reductase activity http://purl.obolibrary.org/obo/GO_0102758
Removed

very-long-chain enoyl-CoA reductase activity SubClassOf oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor

Added

very-long-chain enoyl-CoA reductase activity SubClassOf trans-2-enoyl-CoA reductase (NADPH) activity

very-long-chain-acyl-CoA dehydrogenase activity http://purl.obolibrary.org/obo/GO_0017099
Added

very-long-chain-acyl-CoA dehydrogenase activity SubClassOf trans-2-enoyl-CoA reductase (NADPH) activity

zerumbone synthase activity http://purl.obolibrary.org/obo/GO_0102069
Removed

zerumbone synthase activity SubClassOf oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Added

zerumbone synthase activity SubClassOf alcohol dehydrogenase (NAD+) activity

Added
tRNA 3'-terminal CCA addition SubClassOf ATP metabolic process
Are we adding ATP met process reaction that uses ATP as a substrate?

@hdrabkin thanks for taking a look at this. Should the 'ATP metabolic process' logical definition be revised?

Does this happen with other activities that use ATP? Kinases? Ligases?

Are we adding ATP met process reaction that uses ATP as a substrate

No we dont

Should the 'ATP metabolic process' logical definition be revised to use 'has primary input or output'?

Yes, this is the pattern for 'x metabolic process'


bug fix: debugulator: write all the file

the previous stopped copying the input file at the last error.

I just noticed that if an error can't be fixed, the line is not written either!
An easy way to test this is to run a 4.1 file with the validator in 4.2 mode. The fileformat declaration will be incorrect and the line won't be printed out.
Could more complex tests be added to check the number of lines in output files is correct?

I added as well the fix for the lines with error but no fix. I'm working on more sofisticated integration tests in the branch for INFO fixes.


chore: bdd-sbhg-1582224229 to 0.0.1

chore: Promote bdd-sbhg-1582224229 to version 0.0.1

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When I just import Ldapjs into vue, I got the following error

When I just import Ldapjs into vue, I got the following error:
SyntaxError: Invalid regular expression flags
at Object../node_modules/assert-plus/assert.js (0.e40dd73b563ff0df0f94.hot-update.js:56)
at webpack_require (app.js:679)
at fn (app.js:89)
at eval (VM2589 index.js:4)
at Object../node_modules/ldapjs/lib/errors/index.js (0.e40dd73b563ff0df0f94.hot-update.js:474)
at webpack_require (app.js:679)
at fn (app.js:89)
at eval (VM2588 purge.js:3)
at Object../node_modules/ldapjs/lib/client/request-queue/purge.js (0.e40dd73b563ff0df0f94.hot-update.js:365)
at webpack_require (app.js:679)

We do not support transpilation.

⚠ This issue has been locked due to age. If you have encountered a recent
problem that seems to be covered by this issue, please open a new issue.
Please include a minimal reproducible example
when opening a new issue.


update pandas and some related packages

This PR addresses issue #
Please Check

[ ] Are the JSON schemas updated?
[ ] Are tests passing?

No :-( I was trying this to see how it'd go. About 1/2 are tests break, some in rather obscure ways. I created https://github.com/pandas-dev/pandas/issues/40235 but not going to put more time into this right now.


ImportError: libale.so while running python first tutorial?

While installing dependence's I have trouble installing these  packages
The following extra packages will be installed:
  openjdk-7-jre openjdk-7-jre-headless
Suggested packages:
  openjdk-7-demo openjdk-7-source visualvm icedtea-7-jre-jamvm sun-java6-fonts

The following NEW packages will be installed:
  liblua5.1-0-dev lua5.1 openjdk-7-jdk
The following packages will be upgraded:
  openjdk-7-jre openjdk-7-jre-headless
2 upgraded, 3 newly installed, 0 to remove and 25 not upgraded.
Need to get 55.5 MB/55.7 MB of archives.
After this operation, 19.6 MB of additional disk space will be used.
Do you want to continue? [Y/n]

When continue it returns a 404 error .  I also tried to install openjdk using this `sudo apt-get install openjdk-7-jre' which also returns the same error.
I already installed openjdk from a previous software dependency
$ update-java-alternatives -l
java-1.7.0-openjdk-amd64 1071 /usr/lib/jvm/java-1.7.0-openjdk-amd64
java-8-oracle 1074 /usr/lib/jvm/java-8-oracle

So I installed the cliend ./lauchClient.sh
which succefully installed necessary software and at the end opened minecraft
But when I went to python_example folder and ran python tutorial_1.py it returned this error
Traceback (most recent call last):
  File "tutorial_1.py", line 22, in <module>
    import MalmoPython
ImportError: libale.so: cannot open shared object file: No such file or directory

This is a doubt; Do we have to run ./localClient.sh  every time and initialize minecraft client before running python script such as tutorial_1.py?

@potholiday launchClient.sh takes a long time the first time you run it since it needs to download lots of things. It should be faster the next time. If the Minecraft window appears then your JDK installation is good.
The libale.so problem is because you've downloaded a _withALE version of Malmo. ALE is the Arcade Learning Environment which I'm guessing you don't want to use. So either install ALE or just download the other version of Malmo for your platform.
Let me know if this helps,
Tim

@potholiday To answer your other question: Minecraft has to be running in order for (e.g.) tutorial_1.py to work. You can leave it running but yes, if it is not already running then you need to launch it first with launchClient.sh.

@timhutton Thanks I will try to add ALE or else use the second version :+1:

Closing this issue since probably fixed.


ff - breadcrumb route to component source not getting picked up

https://github.com/noflo/noflo-ui/blob/cd392fd2ad5f1a557c1a930da15bf6e9a5e20585/elements/noflo-context.html#L126 is setting the window hash, but not showing the component editor. Opening from project panel works.

I can get to the component editor with latest Firefox and app.flowhub.io without issue. Closing as fixed.


fix image dimensions for holder.js

fix image dimensions forholder.js
replace px with x

:octocat: https://github.com/imsky/holder#usage

This is definitely broken for me, please check the preview.

Actually, this is wrong. p stands for percentage.


Feature flags: decide endpoint resiliency and switch to v3

We're currently reworking the Android SDK and it already uses the latest version of the decide endpoint (v3).

We're currently reworking the Android SDK and it already uses the latest version of the decide endpoint (v3).

Awesome! Just making sure that that handles the flag resiliency work too. I’ll close this PR then


Fix for #to_hash inspection logic.

Objects that respond to #to_hash, but do not define it, i.e. respond via method missing, cause for an unhelpful error to be raised.
Fixes this issue by replacing #respond_to? with checking the object's public methods.
See #275
Fixes #275

@trevorrowe This is not super significant, but the class never really had a chance of passing as it's checking against a variable called method_name, which is not being passed into respond_to?:
https://github.com/trevorrowe/awesome_print/blob/23cf0d1fc89b63e4d262443a5c78ed364e6bd92c/spec/formats_spec.rb#L788
If we swap out the respond_to with a respond_to_missing then method works without the fix in this PR. respond_to_missing is normally called from respond_to automatically and appears to be specifically intended for the case when the method isn't defined but we want to method to work:
it "that responds to #to_hash but doesn't define it" do
  class My
    def method_missing(method_sym, include_private = false)
      method_sym == :to_hash ? {} : super
    end

    def respond_to_missing?(method_sym, include_private = false)
      method_sym == :to_hash || super
    end
  end

  my = My.new
  expect { my.ai(plain: true) }.not_to raise_error
end

Thoughtbot for instance recommends "always define respond_to_missing? when overriding method_missing": https://robots.thoughtbot.com/always-define-respond-to-missing-when-overriding
This is done by stdlib's Delegate automatically so this is not an issue for you.
Following Thoughtbot's advice means that we are trusting the person implementing the class to tell us what they support, instead of trying to inspect their class manually to see what it supports.
This PR hash been very helpful either way as it pointed out to me that the arity check is not quite right as it will never allow the use of your to_hash due to the arity coming back as a -1. This also applies to the your test where it seems like we should be respecting the value returned here:
if method_name == :to_hash
  {}

I believe fixing the arity check may actually fix other issues we are having in some rare cases.
Thank you

This is very old, so I'm closing it. Feel free to reopen if the above was addressed!

This is very old, so I'm closing it. Feel free to reopen if the above was addressed!


Twitter embed cards

Do something nicer with the twitter embeds.
See here for an example.

Linked to #148

See here for my thoughts.


[TYPE_SAFE_UNION] simplified some type traits and added for_each().

This PR simplifies some type traits and mainly adds type_safe_union::for_each().
This simplifies deserialization and is generally useful for iterating over the alternative types.

@davisking, Is good?

Let me know if you want me to close this.  Cheers

I think with hindsight, i should have made visit() a global function and make it have same signature as std::visit(). I have a working version but don't know if you want it. The member function type_safe_union::visit() works fine but you're right, if it doesn't change the state of the object, then a global maybe makes more sense. If we were to add dlib::visit(), then I think we should remove type_safe_union::visit(), which would be a breaking change. But that's not too bad. It's a relatively new feature and hasn't even made it into a release yet.

I think with hindsight, i should have made visit() a global function and make it have same signature as std::visit(). I have a working version but don't know if you want it. The member function type_safe_union::visit() works fine but you're right, if it doesn't need to access private member variables/functions, then a global is fine. Also it means i don't have 2 copies of basically the same code: 1 for non-const references and 1 for const references.

Ha, that reminds me it's been kinda a while since a release.  I should probably make one.  But yeah, I think changing it is still fair game. So if you want to move visit to be a global function that's cool with me too.

Ha, that reminds me it's been kinda a while since a release. I should probably make one.

Could you do the release before the FFMPEG wrapper merge? It would be good to leave a little bit of wiggle-room for API changes before it makes its way into a proper release.

Ha, that reminds me it's been kinda a while since a release. I should probably make one.

Could you do the release before the FFMPEG wrapper merge? It would be good to leave a little bit of wiggle-room for API changes before it makes its way into a proper release.

Yeah will do. Let me know when this PR is ready. I'll make a release right after it's in.

@davisking PR ready for review. Cheers

@davisking Hold the fort, i'm experimenting with a version of apply_to_contents() and visit() which don't use template recursion at all.

Real shame. This was a known bug: https://gcc.gnu.org/bugzilla/show_bug.cgi?id=47226

I'll revert back to template recursion in a bit.

@davisking Right, I promise, no more commits. Ready for review.

@davisking I hope the documentation style is as you want it. I did manage to get the parameter pack version of apply_to_contents() and visit() working, even with gcc-5. I'm sorry for yet another change. But i do think those implementations are way nicer. I'll wait for your verdict on using int unused[] instead of (void)std::initializer_list<int>. I don't want a million compiler messages about unused parameters. [[maybe_unused]] is only valid in c++17 and __attribute__((unused)) is not cross-platform.

@davisking Ready for a fresh review


Add HIP backened to run on AMD hardware

Add the necessary additions to ExaConstit to allow it to build with HIP

An initial implementation should be fairly simple through the use of MFEM_FORALL's and RAJA. We will need to update our version of blt as seen in the https://github.com/LLNL/ExaCMech/pull/5.

An initial implementation should be fairly simple through the use of MFEM_FORALL's and RAJA. We will need to update our version of blt as seen in the https://github.com/LLNL/ExaCMech/pull/5.


Setting for reproducing reported accuracy

Hello,
I'm trying to reproduce the result reported in your paper.
However, by running the default script for omniglot 20way 1shot,
python main.py     --datasource=omniglot --metatrain_iterations=40000     --meta_batch_size=16 --update_batch_size=1     --num_classes=20 --num_updates=1 --logdir=logs/omniglot20way     --update_lr=.1 --use_T=True --use_M=True --share_M=True
gives 90.X accuracy on test time.
The result was not different even if I changed num_updates to 5 on train time.
Could you give suggestion for reproducing the performance?

Hi,
90% is way off, so this should be a big bug. Here are my suggestions:

Did you download omniglot from https://github.com/brendenlake/omniglot ?
The most critical hyperparameters were meta_batch_size and update_lr, so I'd try tuning those.
Try training longer
Try setting use_T, use_M, share_M to False. That should get MAML's accuracy (95.8%)


Force scrollbar in order to avoid a layout width change when navigating

When going from a long page to a short one (less than the height of the screen), or vice versa, a scrollbar gets added or removed, causing a layout width change that feels ungraceful.
This PR forces the scrollbar slot to always be present, so that this does not happen.

Here’s a screenshot just in case I’m not being clear:

Looks good! I've added a Credits.txt, feel free to add your name to it before I merge this PR

Thanks, but I'll wait until I do some more significant work on this project! :)


Unconfirmed contributors do not show up in search results for a project

Steps
1. Search the OSF for a project that has an unconfirmed contributor (ie. a non-OSF user added to it)
For example, search for "Halevy"
Actual Results
1. Only confirmed contributors show up in search results. For instance, if you visit the project, you see three contributors—one unconfirmed. The search results only show the two confirmed contributors.
![screen shot 2015-02-05 at 10 13 26 am](https://cloud.githubusercontent.com/assets/4965832/6062869/0062a854-ad21-11e4-9f5d-e92b9fc2a56e.png)

Expected Results
1. I would expect that all contributors would show up in search results of projects, not just the confirmed contributors.

The reason it's not happening right now is that all of the information inside of the search results is based on what's indexed in Elastic Search. We could put in AJAX requests for contributor lists, but that's potentially 10 projects worth of gathering contributors, so if someone did a search for RPP and got it and 9 registrations of RPP, then there's a bunch of very slow requests to get that information.
Another option is to potentially index unconfirmed users as if they are real users. That's a good vector for spam there, and while we're not super-concerned about it now, we probably want to think about how we implement with that in mind. It's not the only vector, mind, and we'll have to deal with it at some point, so we could go ahead and implement regardless.
The only thing I'm not sure about is if there's any linkage between the contributors list and the users list. We wouldn't want to try to show unconfirmed users in the user search. I presume they're not, but I think @fabianvf could answer that for sure.
We might also need a little more logic in the search view model or template if we implement to ensure that contributors who are unconfirmed don't have links. That should be very easy.

Agreed that ideally all contributors, confirmed or not, might be searchable -- but for now, and thank you @brianjgeiger for insight, let's defer until we analyze search again as a whole.

We currently purposefully filter unconfirmed users out of the search results, but they should still probably be displayed on projects. I just looked into it, and it would be a quick 1 line change to get all contributors indexed. This means that searching for an un{registered|confirmed} user would bring up all projects that they have been added to.

Alright @fabian -- Want to make it happen? I tagged this to you - TY

Wrong @fabian, probably meant for @fabianvf ;-)

Right!! Thank you @fabian : - ) ... This one is for you @fabianvf -- OK? TY

@lbanner  Is this a hotfix or feature?

Feature @fabianvf  -- PR whenever you are ready


Add Chinese translation for fastapi-people.md

@RunningIkkyu @maoyibo @yanever I don’t know how to translate "sections" and "thresholds",Ask for guidance.

sections -> "栏目", thresholds -> "统计阈值"

Let me know when you finished,I'll review it.

Why closed? This pr will be merged in next release.

Sorry, I executed a wrong command.

Awesome, thanks for your contribution @hareru ! :rocket:
And thanks for the reviews @RunningIkkyu, @waynerv, and @Laineyzhang55 :bow: :coffee:


'sed -i' need postfix on mac

Description

build fails on mac due to #3247 . adding extension that will only be created in '/target/' anyway

Types of changes

[ ] Breaking change (fix or feature that would cause existing functionality to change)
[ ] New feature (non-breaking change which adds functionality)
[ ] Bug fix (non-breaking change which fixes an issue)
[ ] Enhancement (improves an existing feature and functionality)
[ ] Cleanup (Code refactoring and cleanup, that may add test cases)

Screenshots (if appropriate):
How Has This Been Tested?

ping @GabrielBrascher @nathanejohnson , this slipped in end of march. didn't notice, too much on fedora :(, not enough on a mac :)

@DaanHoogland env issue, the sed on OSX is freebsd based you can try gnu-sed like:
$ brew install gnu-sed

@DaanHoogland env issue, the sed on OSX is freebsd based

I realize that, but it complicates build and thus inhibits people entering the playing field. I would prefer adding the extension, it is in the target dir and doesn't hurt anybody.

@rhtyd you can easily add gnu sed to mac via homebrew as you point out, however the binary is called 'gsed' to avoid conflicting with the main sed installed in /usr/bin .

@blueorangutan package

@rhtyd a Jenkins job has been kicked to build packages. I'll keep you posted as I make progress.

Packaging result: ✖centos6 ✖centos7 ✖debian. JID-2752

@DaanHoogland I don't think that this would work on linux. The -i must be appended with the .bak (-i.bak)
Documentation:
-i[SUFFIX], --in-place[=SUFFIX]
              edit files in place (makes backup if SUFFIX supplied)

closed-open PR to rekick Travis
@blueorangutan package

@rhtyd a Jenkins job has been kicked to build packages. I'll keep you posted as I make progress.

@DaanHoogland I don't think that this would work on linux. The -i must be appended with the .bak (-i.bak)
@GaborApatiNagy, I'll try and find time to test this on fedora and if so I'll checnge it to the long option.
I hope there is some compatible option/argument set between the two.

Packaging result: ✖centos6 ✖centos7 ✖debian. JID-2799

travis is quite clear in this case: needs tlc

@DaanHoogland can you debug via the backend jenkins what failed?

@rhtyd if you mean travis, yes. but kind of high prio -3.

@DaanHoogland fails on linux with:
Warning, API Cmd class com.cloud.api.commands.SimulatorAddSecondaryAgent has no APICommand annotation
Scanned and found 607 APIs
sed: -e expression #1, char 1: unknown command: `.'
[ERROR] Failed to execute goal org.codehaus.mojo:exec-maven-plugin:1.2.1:exec (compile) on project cloud-apidoc: Command execution failed. Process exited with an error: 1 (Exit value: 1) -> [Help 1]

This is onhold until Travis passes.

Closing as https://github.com/apache/cloudstack/pull/4253 fixed it